genome.fa.s10.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold10
Parameters: 2 7 7 80 10 50 1000
Length:  3842500

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  18  of  25  ( 2970 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2869859--2869896	15	2.5	15	84	16	51	26	0	0	73	0.83
2870056--2870093	16	2.4	16	86	4	51	55	2	2	39	1.28
2870896--2870928	15	2.1	16	88	5	50	69	0	0	30	0.88
2870973--2871600	237	2.7	234	88	4	951	53	14	10	21	1.71
2872816--2872890	8	10.4	8	73	20	58	57	0	0	42	0.98
2872816--2872856	15	2.8	15	75	17	50	58	0	0	41	0.98
2873269--2873341	22	3.2	21	74	18	67	64	0	0	35	0.94
2873265--2873345	33	2.5	32	78	13	94	64	0	0	35	0.94
2873604--2873658	16	3.4	16	78	14	60	38	1	0	60	1.08
2873987--2874023	15	2.4	16	86	13	60	32	0	0	67	0.91
2874076--2874113	16	2.4	16	86	0	58	39	7	10	42	1.69
2875127--2875193	27	2.4	28	85	2	82	25	10	17	46	1.80
2877423--2877489	27	2.4	28	85	2	82	25	10	17	46	1.80
2879120--2879259	52	2.7	53	84	4	178	41	12	15	31	1.83
2880119--2880147	15	1.9	15	100	0	58	68	6	0	24	1.13
2880047--2880152	23	4.4	24	75	14	87	70	4	0	24	1.06
2880088--2880240	6	26.5	6	67	20	51	62	1	0	35	1.03
2880128--2880215	31	3.0	29	74	16	83	61	1	0	37	1.04
2880146--2880238	20	4.7	19	73	12	62	56	0	0	43	0.99
2880059--2880213	11	13.1	12	68	21	62	65	2	0	31	1.06
2880203--2880240	2	19.5	2	89	5	60	52	0	0	47	1.00
2880604--2880673	25	2.7	26	81	14	67	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2880658--2880724	10	6.8	10	77	12	59	52	0	0	47	1.00
2880657--2880746	31	3.0	31	74	16	91	51	0	0	48	1.00
2880880--2881039	16	9.8	16	69	16	64	43	2	0	53	1.14
2880879--2880916	20	2.0	20	94	5	69	39	0	0	60	0.97
2880879--2880930	19	2.8	19	86	11	65	42	0	0	57	0.98
2881398--2881434	14	2.5	16	79	20	53	40	0	0	59	0.97
2881981--2882027	17	2.8	16	87	6	58	46	0	0	53	1.00
2881994--2882070	32	2.3	34	78	12	81	50	0	0	49	1.00
2881995--2882078	20	4.2	20	70	18	59	51	0	0	48	1.00
2882073--2882103	11	2.9	11	95	4	55	74	0	0	25	0.82
2882447--2882914	117	4.0	116	83	4	530	40	7	8	43	1.64
2883712--2883777	20	3.3	20	75	12	64	54	1	1	42	1.18
2883749--2883793	22	2.1	21	87	4	63	51	4	2	42	1.34
2883913--2883953	17	2.5	16	84	7	55	48	0	0	51	1.00
2883983--2884026	22	2.0	23	86	13	65	47	0	2	50	1.13
2884117--2884166	20	2.5	20	87	9	66	0	20	0	80	0.72
2886559--2886655	41	2.4	41	79	8	108	50	0	0	49	1.00
2886559--2886657	40	2.5	40	81	6	103	49	0	0	50	1.00
2886592--2886660	10	6.6	10	80	8	59	49	0	0	50	1.00
2888325--2888366	18	2.3	18	84	8	50	47	2	2	47	1.28
2888467--2888505	17	2.2	18	86	9	53	43	2	0	53	1.14
2889023--2889117	32	3.3	28	77	16	88	40	0	1	58	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2889037--2889104	32	2.1	33	88	2	102	41	0	1	57	1.08
2888992--2889119	32	4.4	27	72	20	82	39	0	1	58	1.13
2888974--2889126	29	5.3	29	67	21	81	37	0	1	60	1.10
2889069--2889144	39	1.9	39	81	5	91	34	0	3	61	1.14
2889359--2889385	2	13.5	2	100	0	54	51	0	0	48	1.00
2891318--2891350	7	4.9	7	96	3	59	60	0	0	39	0.97
2893238--2893286	2	24.5	2	100	0	98	51	0	0	48	1.00
2893284--2893319	4	9.0	4	87	0	54	50	27	0	22	1.50
2895603--2895648	21	2.2	21	88	3	67	54	0	0	45	0.99
2896615--2896660	16	2.9	16	76	0	56	47	0	0	52	1.00
2896631--2896707	21	3.6	21	75	14	59	53	1	0	45	1.08
2896656--2896693	6	6.3	6	85	11	51	55	0	0	44	0.99
2897093--2897207	37	3.2	37	85	4	146	25	38	8	27	1.85
2897324--2897468	37	4.1	34	79	11	157	27	35	7	28	1.84
2896963--2897453	246	2.0	245	91	0	793	26	28	12	32	1.92
2897324--2897468	72	2.0	71	81	9	170	27	35	7	28	1.84
2897973--2898005	2	16.5	2	100	0	66	48	0	0	51	1.00
2898876--2898922	15	3.1	15	79	20	53	53	2	0	44	1.12
2899158--2899197	19	2.2	19	86	13	57	62	0	0	37	0.95
2908072--2908202	35	3.6	35	79	6	127	23	35	10	30	1.89
2908081--2908202	37	3.4	36	85	4	156	25	34	9	30	1.88
2909465--2909613	34	4.4	34	93	0	226	24	0	34	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2914321--2914469	34	4.4	34	92	0	217	24	0	34	40	1.60
2914928--2914957	15	2.0	15	93	0	51	56	0	0	43	0.99
2915492--2915531	19	2.2	19	86	13	57	62	0	0	37	0.95
2916010--2916175	68	2.4	68	80	2	172	36	2	14	46	1.58
2916066--2916191	34	3.7	34	75	6	130	34	3	17	45	1.64
2917501--2917532	16	2.0	16	100	0	64	43	25	6	25	1.77
2919001--2919042	22	1.9	22	90	9	68	61	0	0	38	0.96
2919233--2919297	23	2.8	23	77	15	80	55	0	0	44	0.99
2921544--2921608	24	2.6	25	79	13	73	40	1	1	56	1.18
2922236--2922274	16	2.4	16	87	8	53	17	2	10	69	1.28
2922473--2922524	16	3.1	17	76	17	54	59	0	1	38	1.08
2923022--2923062	19	2.2	19	91	4	66	51	4	2	41	1.36
2924303--2924410	19	5.5	19	71	16	67	57	0	0	41	1.05
2924918--2924964	3	15.7	3	100	0	94	31	0	0	68	0.90
2925033--2925098	3	22.3	3	96	3	125	66	0	0	33	0.92
2927306--2927525	34	6.5	33	81	9	255	41	26	7	24	1.82
2927308--2927525	68	3.2	67	84	3	285	41	26	7	24	1.82
2927306--2927525	102	2.2	101	88	1	341	41	26	7	24	1.82
2927504--2927541	20	2.0	20	89	5	60	42	28	0	28	1.56
2931597--2931817	34	6.5	33	81	9	257	41	26	7	24	1.82
2931599--2931817	68	3.2	67	85	3	287	41	26	7	25	1.82
2931597--2931817	102	2.2	101	88	1	343	41	26	7	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2932917--2932941	6	4.2	6	100	0	50	48	0	0	52	1.00
2934787--2934833	23	2.0	25	87	8	71	46	14	12	25	1.80
2935919--2936040	65	1.9	65	81	10	151	49	9	5	36	1.58
2936034--2936073	19	2.2	18	91	8	64	57	0	5	37	1.21
2936146--2936189	17	2.6	16	79	13	52	77	4	9	9	1.12
2937793--2937976	97	1.9	97	89	0	287	33	17	16	33	1.92
2938400--2938441	22	1.9	22	90	9	68	61	0	0	38	0.96
2938631--2938695	23	2.8	23	77	15	80	55	0	0	44	0.99
2940346--2940760	79	5.2	78	80	6	417	32	14	26	27	1.94
2940346--2940760	158	2.6	156	82	6	480	32	14	26	27	1.94
2940717--2940792	28	2.7	27	86	8	91	28	18	28	23	1.98
2940822--2941036	78	2.8	78	86	2	272	32	13	24	29	1.93
2943352--2943475	20	5.8	20	78	15	122	44	14	15	25	1.84
2943306--2943474	69	2.4	70	89	4	254	43	15	14	26	1.85
2943734--2944030	140	2.1	141	86	5	411	41	8	9	40	1.68
2944182--2944210	15	1.9	15	100	0	58	55	24	0	20	1.44
2944744--2944791	25	1.9	25	95	0	87	45	0	4	50	1.21
2947784--2947845	23	2.8	21	79	13	61	72	1	20	4	1.12
2947804--2947842	17	2.2	17	86	9	51	74	0	25	0	0.82
2948121--2948161	21	1.9	22	85	5	57	26	7	4	60	1.43
2948727--2948775	12	3.8	13	76	12	57	53	0	0	46	1.00
2950357--2950392	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2951519--2951581	13	5.3	13	68	27	50	71	0	1	26	0.95
2951519--2951585	22	3.0	22	80	18	84	70	0	1	28	0.96
2951519--2951613	24	4.0	25	82	8	92	65	0	1	33	1.00
2951533--2951631	32	3.2	31	80	4	112	62	0	1	36	1.02
2951520--2951671	20	7.3	21	71	16	77	63	0	0	35	0.99
2951635--2951677	11	3.8	11	84	3	50	62	0	0	37	0.95
2952061--2952117	12	5.3	11	80	16	66	64	0	0	35	0.93
2952061--2952130	5	14.0	5	71	16	56	64	0	0	35	0.94
2952066--2952168	22	4.9	21	72	15	79	59	0	0	40	0.98
2952098--2952193	40	2.4	39	80	13	106	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25