genome.fa.s15.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold15
Parameters: 2 7 7 80 10 50 1000
Length:  4011073

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  23  of  25  ( 2909 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3648379--3648447	33	2.1	33	91	5	113	36	18	11	33	1.87
3648409--3648446	20	1.9	20	94	0	67	39	18	10	31	1.85
3648379--3648426	13	4.2	13	75	25	54	35	18	12	33	1.89
3648476--3648548	20	3.7	20	83	7	87	39	16	13	30	1.87
3649519--3649574	20	2.7	20	86	5	67	44	12	12	30	1.79
3649622--3649677	20	2.7	21	80	5	69	30	14	14	41	1.85
3649642--3649695	20	2.6	21	82	2	65	35	14	9	40	1.78
3653161--3653295	69	2.0	66	84	8	173	40	9	16	34	1.81
3653950--3653995	23	2.0	23	91	0	74	34	19	15	30	1.93
3654807--3655037	79	2.9	79	86	0	309	37	12	24	25	1.90
3654901--3655168	130	2.1	130	85	1	367	36	12	23	27	1.91
3654972--3655090	51	2.3	51	88	0	184	35	11	24	28	1.91
3655024--3655561	79	6.8	79	83	3	566	36	12	22	28	1.90
3655024--3655564	158	3.4	157	83	6	655	36	12	22	28	1.90
3654815--3655245	209	2.1	210	83	4	550	37	11	23	27	1.90
3655047--3655481	236	1.8	236	84	5	594	37	11	22	28	1.89
3657967--3658028	24	2.7	22	82	5	70	37	11	9	41	1.74
3670021--3670093	31	2.3	32	85	2	103	39	16	13	30	1.87
3670172--3670228	20	2.8	21	82	15	66	35	15	8	40	1.79
3671603--3671637	11	3.0	12	83	8	54	74	0	5	20	1.02
3675047--3675077	16	1.9	16	100	0	62	38	16	19	25	1.92
3677060--3677086	2	13.5	2	100	0	54	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3677752--3677793	22	2.0	22	90	4	68	33	0	0	66	0.92
3677910--3677953	3	14.7	3	95	0	79	63	2	0	34	1.07
3678634--3678801	50	3.4	50	83	0	201	31	15	16	36	1.90
3678855--3678911	30	1.9	30	96	0	105	50	12	12	24	1.74
3679886--3679924	18	2.2	18	85	0	51	66	0	17	15	1.25
3683229--3683323	50	1.9	50	86	0	136	33	15	15	34	1.90
3685112--3685159	3	16.0	3	100	0	96	33	0	0	66	0.92
3687335--3687397	27	2.2	27	83	8	72	46	9	1	42	1.46
3694743--3694789	20	2.3	21	77	3	51	44	4	12	38	1.62
3694604--3694891	142	2.0	143	80	6	325	42	10	9	38	1.72
3703433--3703507	28	2.7	29	75	4	82	22	17	32	28	1.96
3703894--3704077	81	2.3	81	83	6	212	36	11	25	26	1.90
3703931--3704103	81	2.2	80	87	5	242	33	10	27	28	1.90
3702894--3704152	628	2.0	628	92	1	2085	37	10	23	28	1.88
3704062--3704134	28	2.6	29	82	6	89	21	17	32	27	1.96
3704087--3704488	80	5.0	78	72	7	306	31	10	28	30	1.90
3703983--3704209	108	2.1	108	82	9	277	29	10	31	29	1.90
3703932--3704279	188	1.8	189	81	5	436	33	10	27	29	1.89
3709264--3709313	21	2.3	22	82	3	66	28	6	16	50	1.68
3709424--3709486	32	1.9	33	87	9	94	30	15	12	41	1.85
3709553--3709578	13	2.0	13	100	0	52	38	15	15	30	1.88
3710459--3710682	115	1.9	115	93	0	385	38	17	16	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3715872--3715896	13	1.9	13	100	0	50	36	16	16	32	1.90
3715928--3716189	143	1.8	143	96	0	488	35	24	1	37	1.65
3718510--3718567	20	3.0	20	87	2	73	37	13	13	34	1.85
3721892--3721953	22	2.8	22	85	0	70	41	4	11	41	1.62
3722125--3722180	22	2.5	22	82	5	60	41	14	14	30	1.85
3722633--3722677	22	2.0	22	87	8	65	37	6	11	44	1.66
3722732--3722906	52	3.3	52	79	13	196	41	0	3	54	1.21
3722749--3722905	53	2.9	53	79	8	174	41	0	3	54	1.21
3722879--3722950	23	3.2	23	66	18	69	43	1	8	47	1.42
3722948--3722987	18	2.2	19	90	4	64	20	0	2	77	0.88
3730127--3730187	32	2.0	32	83	6	81	26	4	6	62	1.40
3731973--3732012	15	2.7	15	92	0	62	57	0	7	35	1.27
3732623--3732666	10	4.6	9	81	13	52	75	0	2	22	0.92
3732728--3732763	18	1.9	19	88	5	56	38	5	22	33	1.77
3734648--3734682	15	2.4	15	95	4	63	48	5	5	40	1.51
3735825--3735878	20	2.7	20	88	8	74	31	20	11	37	1.88
3737761--3737993	79	3.0	78	76	5	236	33	9	17	38	1.83
3739586--3739690	35	2.8	38	68	11	99	30	14	17	38	1.89
3739662--3739841	77	2.3	77	77	8	188	30	17	17	35	1.93
3750409--3750455	20	2.3	21	77	3	51	44	4	12	38	1.62
3753417--3753449	16	2.0	16	94	5	57	39	0	0	60	0.97
3756869--3756902	17	2.0	17	94	0	59	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3759097--3759171	28	2.7	29	75	4	82	22	17	32	28	1.96
3759566--3759742	81	2.2	81	80	6	198	35	10	25	28	1.89
3759595--3759767	81	2.2	80	87	5	242	33	10	27	28	1.90
3758558--3759816	628	2.0	628	92	0	2101	37	10	23	28	1.88
3759726--3759798	28	2.6	29	82	6	89	21	17	32	27	1.96
3759753--3760153	80	5.0	78	72	7	304	31	10	27	29	1.91
3759647--3759873	108	2.1	108	82	9	277	29	11	31	28	1.92
3759596--3759943	188	1.8	189	81	5	436	33	10	27	28	1.90
3765086--3765148	32	1.9	33	87	9	94	30	15	12	41	1.85
3765215--3765240	13	2.0	13	100	0	52	38	15	15	30	1.88
3766121--3766344	115	1.9	115	94	0	394	38	18	16	25	1.92
3771593--3771854	143	1.8	143	96	0	488	35	24	1	37	1.65
3774177--3774234	20	3.0	20	87	2	73	37	13	13	34	1.85
3777553--3777614	22	2.8	22	87	0	79	43	4	9	41	1.59
3777788--3777843	22	2.5	22	82	5	60	41	14	14	30	1.85
3778271--3778340	22	3.2	22	80	8	79	40	7	12	40	1.71
3778395--3778630	53	4.6	51	76	15	202	40	0	4	54	1.26
3778518--3778623	45	2.3	45	80	7	142	39	0	6	52	1.34
3778541--3778612	23	3.2	23	66	18	69	43	1	8	47	1.42
3778610--3778649	18	2.2	19	90	4	64	20	0	2	77	0.88
3780498--3780522	11	2.3	11	100	0	50	76	0	8	16	1.02
3783814--3783838	2	12.5	2	100	0	50	52	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3785833--3785893	32	2.0	32	83	6	81	26	4	6	62	1.40
3785910--3785937	2	14.0	2	100	0	56	50	0	0	50	1.00
3787425--3787457	15	2.3	14	94	5	57	78	6	0	15	0.93
3787708--3787747	15	2.7	15	92	0	62	57	0	7	35	1.27
3788315--3788358	10	4.6	9	81	13	52	75	0	2	22	0.92
3788420--3788455	18	1.9	19	88	5	56	38	5	22	33	1.77
3790325--3790359	15	2.4	15	95	4	63	48	5	5	40	1.51
3791079--3791134	21	2.7	21	91	0	94	33	10	19	35	1.87
3791190--3791257	19	3.9	19	78	21	85	35	11	14	38	1.83
3791211--3791235	13	1.9	13	100	0	50	36	16	16	32	1.90
3791192--3791254	32	2.0	32	96	0	117	34	12	15	36	1.86
3791276--3791331	20	2.8	20	77	0	67	25	16	14	44	1.84
3793782--3793854	27	2.6	28	86	2	94	23	35	21	19	1.96
3793839--3794009	52	3.3	51	78	5	191	31	24	10	33	1.89
3793989--3794070	28	2.9	28	80	7	87	24	31	17	26	1.97
3793696--3794080	211	1.8	211	87	3	569	29	26	11	31	1.92
3806462--3806516	13	4.4	12	88	6	65	83	10	5	0	0.79
3806463--3806545	15	5.9	14	72	13	71	81	8	9	0	0.86
3806475--3806542	18	3.6	18	76	13	66	83	7	8	0	0.80
3806474--3806525	13	4.0	13	90	5	70	84	11	3	0	0.74
3807505--3807925	55	7.4	54	82	10	423	26	28	20	24	1.99
3807506--3807925	118	3.7	114	81	7	464	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3807818--3807906	29	3.2	29	63	9	76	24	29	20	25	1.99
3808637--3808690	21	2.6	21	93	0	90	33	11	18	37	1.86
3808746--3808815	19	4.1	18	75	22	78	34	12	12	40	1.82
3808767--3808791	13	1.9	13	100	0	50	36	16	16	32	1.90
3808748--3808810	32	2.0	32	93	0	108	34	14	14	36	1.86
3808853--3808878	13	2.0	13	100	0	52	30	15	15	38	1.88
3808833--3808899	33	2.0	33	88	0	98	25	14	16	43	1.86
3811231--3811364	51	2.6	51	81	8	162	32	26	10	31	1.90
3811351--3811423	27	2.7	27	87	6	94	23	34	21	20	1.97
3811446--3811577	52	2.5	52	82	3	167	31	25	9	32	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25