Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold15
Parameters: 2 7 7 80 10 50 1000
Length:  4011073

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  25  of  25  ( 2909 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3955913--3955986
22
3.5
22
66
17
66
25
35
1
37
1.65
3963421--3963451
13
2.4
13
94
0
53
35
12
16
35
1.87
3963496--3963568
19
3.7
19
92
3
110
36
17
15
30
1.91
3963557--3963581
13
1.9
13
100
0
50
32
16
16
36
1.90
3963538--3963602
33
2.0
32
90
3
103
36
16
16
29
1.92
3965808--3965883
20
3.8
20
86
6
91
35
14
14
35
1.87
3967904--3968054
48
3.2
48
83
2
171
22
19
17
41
1.91
3967930--3968290
47
7.7
47
77
7
265
19
22
17
39
1.92
3967982--3968301
140
2.3
141
83
5
391
20
24
16
39
1.92
3968399--3968718
85
3.8
84
82
5
308
20
31
13
34
1.91
3968483--3968717
84
2.8
85
84
4
312
20
31
13
34
1.91
3971636--3971668
15
2.1
17
88
11
52
57
0
6
36
1.23
3974552--3974580
2
14.5
2
100
0
58
51
0
48
0
1.00
3976307--3976345
19
2.1
19
85
9
53
35
5
2
56
1.35
3980193--3980236
19
2.2
20
84
8
54
34
0
0
65
0.93
3988462--3988487
13
2.0
13
100
0
52
30
15
15
38
1.88
3988442--3988505
32
2.0
33
90
3
103
28
14
18
39
1.90
3988442--3988512
19
4.0
18
72
25
62
26
12
21
39
1.89
3991062--3991101
13
3.1
13
92
0
71
37
15
17
30
1.90
3991261--3991300
13
2.9
14
88
7
55
42
25
0
32
1.55
3997674--3997849
79
2.2
79
85
2
246
40
11
21
25
1.87
3999682--3999722
14
3.0
13
86
10
55
24
0
0
75
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3999682--3999754
28
2.7
28
79
8
80
26
0
2
71
1.00
3999868--4000201
144
2.3
144
80
9
351
34
5
8
50
1.57
4001114--4001141
3
9.3
3
100
0
56
32
0
0
67
0.91
4001833--4001867
3
11.7
3
93
0
61
31
0
2
65
1.07
4001867--4001899
3
11.0
3
93
0
57
0
30
0
69
0.88
4002371--4002405
19
1.9
17
88
11
52
0
20
2
77
0.90
4007102--4007127
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25

The End!