genome.fa.s15.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold15
Parameters: 2 7 7 80 10 50 1000
Length:  4011073

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  7  of  25  ( 2909 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1030394--1031470	418	2.6	417	83	4	1308	41	16	21	20	1.90
1032393--1032431	14	2.7	14	92	4	60	2	10	7	79	1.02
1032763--1032788	13	2.0	13	100	0	52	0	15	0	84	0.62
1036590--1036735	31	4.5	32	85	6	179	27	17	26	28	1.98
1038253--1038533	138	2.0	138	89	0	427	20	29	14	34	1.93
1038570--1038611	15	2.8	16	79	20	54	11	9	2	76	1.12
1041546--1041570	13	1.9	13	100	0	50	32	16	16	36	1.90
1041526--1041590	33	2.0	32	85	11	87	33	16	13	35	1.89
1041620--1041672	19	2.7	19	82	2	61	35	18	15	30	1.92
1043953--1043995	21	2.0	22	86	4	61	58	0	13	27	1.37
1050177--1050235	20	3.0	20	73	12	59	42	15	8	33	1.77
1050331--1050403	20	3.7	19	85	7	76	41	17	13	27	1.88
1052093--1052127	13	2.7	13	95	0	61	40	20	14	25	1.90
1069603--1069656	20	2.7	19	86	11	65	37	18	12	31	1.89
1072099--1072124	13	2.0	13	100	0	52	38	15	15	30	1.88
1072112--1072176	20	3.6	20	73	26	81	40	12	15	32	1.84
1072130--1072156	13	2.1	13	100	0	54	33	14	14	37	1.88
1072098--1072178	33	2.5	33	97	0	153	38	12	14	34	1.84
1079861--1079906	3	15.3	3	100	0	92	32	34	0	32	1.58
1081422--1081474	20	2.7	20	93	0	88	39	16	9	33	1.81
1082018--1082084	33	2.0	33	88	0	98	34	11	13	40	1.81
1082038--1082062	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082127--1082151	13	1.9	13	100	0	50	32	16	16	36	1.90
1082160--1082280	52	2.3	52	97	0	224	34	18	18	28	1.94
1086608--1086887	150	1.9	149	85	3	393	36	14	22	26	1.92
1089126--1089177	20	2.6	20	87	0	68	44	9	13	32	1.76
1089244--1089292	21	2.3	21	100	0	98	34	14	6	44	1.70
1091762--1092144	81	4.8	79	79	4	374	30	26	10	32	1.90
1103788--1103986	79	2.5	79	80	1	193	30	16	27	25	1.97
1104021--1104385	52	7.0	51	69	15	194	33	10	25	29	1.90
1104002--1104394	51	7.5	51	69	12	199	32	11	25	30	1.91
1103890--1104394	262	1.9	262	94	0	893	32	12	26	28	1.93
1109973--1110024	20	2.7	19	77	11	52	34	15	13	36	1.87
1110073--1110097	13	1.9	13	100	0	50	36	16	16	32	1.90
1110854--1111045	62	2.9	63	76	15	192	52	13	2	31	1.54
1110916--1111051	71	1.9	72	89	1	211	52	13	2	31	1.55
1111112--1111256	73	2.0	74	83	5	179	52	13	0	33	1.45
1111199--1111320	61	2.0	60	85	1	163	59	12	0	27	1.39
1111389--1111977	73	8.3	73	74	12	410	54	12	1	31	1.48
1111391--1111723	71	4.9	64	74	13	174	54	12	1	32	1.46
1111914--1112032	55	2.2	55	96	3	224	53	11	3	31	1.53
1111977--1112196	73	3.0	70	81	11	244	53	10	2	33	1.48
1112346--1112385	22	2.0	20	85	14	55	45	7	5	42	1.54
1112506--1112530	13	1.9	13	100	0	50	24	16	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1113825--1113891	37	1.9	35	88	11	102	29	25	11	32	1.92
1114350--1114375	13	2.0	13	100	0	52	30	15	15	38	1.88
1114331--1114393	32	2.0	32	87	6	92	28	15	14	41	1.87
1114414--1114489	21	3.7	21	80	3	100	28	17	11	42	1.84
1114435--1114507	20	3.6	20	81	3	101	31	19	13	35	1.91
1114414--1114507	41	2.3	41	98	0	179	29	18	12	39	1.88
1116218--1116242	13	1.9	13	100	0	50	32	16	16	36	1.90
1119338--1119404	37	1.9	35	88	11	102	29	25	11	32	1.92
1119863--1119888	13	2.0	13	100	0	52	30	15	15	38	1.88
1119844--1119906	32	2.0	32	87	6	92	28	15	14	41	1.87
1119927--1120002	21	3.7	21	80	3	100	28	17	11	42	1.84
1119948--1120020	20	3.6	20	81	3	101	31	19	13	35	1.91
1119927--1120020	41	2.3	41	98	0	179	29	18	12	39	1.88
1121000--1121544	73	7.6	72	80	7	473	52	12	1	33	1.50
1121097--1121502	214	1.9	213	82	5	505	51	13	2	33	1.53
1121003--1121544	144	3.8	142	76	10	492	52	12	1	33	1.49
1121506--1121543	20	1.9	20	88	0	58	60	7	0	31	1.25
1121918--1121966	10	5.0	10	76	19	50	46	2	0	51	1.12
1122119--1122181	28	2.2	29	83	8	76	42	11	12	33	1.78
1122183--1122216	2	17.0	2	100	0	68	50	0	0	50	1.00
1132827--1133325	171	2.9	171	90	2	788	43	10	7	39	1.67
1135539--1135573	15	2.3	15	90	0	52	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1135811--1135871	24	2.6	24	76	10	63	42	1	3	52	1.27
1136916--1136968	24	2.4	21	75	9	52	24	3	1	69	1.15
1139794--1139828	3	11.7	3	87	0	52	40	0	31	28	1.57
1144296--1144334	20	1.9	21	94	5	71	35	12	17	33	1.88
1148905--1148981	20	3.8	20	83	6	102	42	10	14	32	1.79
1149566--1150709	28	39.9	27	82	10	1089	23	18	30	27	1.98
1149499--1150710	56	21.0	57	83	7	1289	23	18	29	27	1.98
1151949--1152000	9	5.8	9	78	13	54	3	0	11	84	0.74
1151951--1151990	14	2.8	14	92	3	62	5	0	10	85	0.75
1153724--1153790	37	1.9	35	88	11	102	29	25	11	32	1.92
1154269--1154294	13	2.0	13	100	0	52	30	23	15	30	1.95
1154364--1154419	22	2.5	22	100	0	112	35	12	25	26	1.91
1154407--1154437	10	3.1	10	90	0	53	41	6	29	22	1.78
1154514--1154584	20	3.5	20	77	11	74	29	12	16	40	1.86
1154624--1154664	21	2.0	21	85	9	57	39	9	12	39	1.76
1163002--1163041	19	2.1	19	85	0	53	70	7	10	12	1.35
1167279--1167352	20	3.7	19	75	5	58	47	9	12	31	1.73
1168788--1168840	19	2.7	19	85	2	61	28	18	13	39	1.88
1173269--1173335	33	2.0	33	88	0	98	34	11	13	40	1.81
1173289--1173313	13	1.9	13	100	0	50	36	16	16	32	1.90
1173378--1173402	13	1.9	13	100	0	50	32	16	16	36	1.90
1173411--1173531	52	2.3	52	94	0	215	35	18	17	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1177237--1177307	27	2.6	27	100	0	142	12	19	45	22	1.84
1178545--1178591	21	2.3	21	82	13	62	42	19	17	21	1.89
1179442--1179570	52	2.5	52	98	0	249	27	18	18	34	1.95
1179579--1179603	13	1.9	13	100	0	50	36	16	16	32	1.90
1179649--1179746	19	5.8	18	71	28	90	36	17	12	33	1.87
1179644--1179744	32	3.1	32	97	1	184	35	17	11	34	1.87
1179668--1179724	13	3.9	13	76	24	60	33	17	14	35	1.90
1183718--1183866	52	2.9	52	93	3	257	29	16	18	36	1.92
1183906--1183963	13	3.9	13	73	26	53	32	17	13	36	1.89
1183919--1183984	20	3.7	20	73	26	83	34	18	12	34	1.88
1183885--1183983	33	3.0	33	97	1	182	35	17	12	35	1.87
1184402--1184649	61	4.2	61	76	11	192	37	13	23	24	1.91
1184474--1184584	52	2.1	52	83	1	141	37	14	23	24	1.92
1184463--1184740	115	2.4	113	85	3	362	37	12	24	25	1.91
1184882--1184996	32	3.6	32	77	11	119	16	15	32	35	1.90
1184905--1184999	32	2.9	33	87	3	147	15	15	33	34	1.90
1186186--1186234	25	2.0	25	84	8	64	4	6	10	79	1.03
1191099--1191305	81	2.6	78	80	5	209	31	15	28	24	1.96
1191259--1191327	28	2.5	27	86	9	86	26	15	33	24	1.95
1193805--1193830	13	2.0	13	100	0	52	38	15	15	30	1.88
1193784--1193850	33	2.0	33	88	0	98	43	16	14	25	1.86
1193892--1193916	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1193873--1193935	32	2.0	32	90	0	99	38	17	11	33	1.85
1193993--1194049	21	2.7	21	97	0	105	36	19	10	33	1.86
1194730--1195300	61	9.8	60	87	7	677	26	20	27	25	1.99
1194751--1195378	117	5.5	116	86	7	720	24	20	28	26	1.99
1194754--1195358	55	10.5	59	85	8	666	24	20	28	26	1.99
1195403--1195706	55	5.3	58	84	7	333	23	21	28	27	1.99
1196675--1196749	9	7.9	9	73	19	55	0	12	5	82	0.82
1196675--1196749	28	2.6	27	78	16	71	0	12	5	82	0.82
1196712--1196750	15	2.7	14	88	7	60	0	10	5	84	0.76
1197947--1197972	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25