genome.fa.s160.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold160
Parameters: 2 7 7 80 10 50 1000
Length:  5021213

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  10  of  30  ( 3592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1524100--1524125	13	2.0	13	100	0	52	30	15	15	38	1.88
1524080--1524145	33	2.0	33	88	2	98	34	18	12	34	1.88
1525175--1525202	13	2.2	13	100	0	56	39	21	17	21	1.93
1525627--1525656	13	2.3	13	100	0	60	36	13	16	33	1.88
1525606--1525672	33	2.0	33	91	5	109	34	19	13	32	1.91
1526954--1526978	13	1.9	13	100	0	50	32	16	16	36	1.90
1526934--1526998	32	2.0	32	90	0	103	35	18	12	33	1.88
1532549--1532586	13	2.9	13	96	0	67	31	15	18	34	1.92
1532717--1532757	22	2.0	20	86	13	57	31	19	4	43	1.72
1533018--1533059	20	2.0	21	90	4	68	19	47	28	4	1.69
1535019--1535043	13	1.9	13	100	0	50	32	16	16	36	1.90
1535031--1535083	20	2.6	21	84	3	72	39	15	16	28	1.89
1535125--1535150	13	2.0	13	100	0	52	30	15	15	38	1.88
1535105--1535170	33	2.0	33	88	2	98	34	18	12	34	1.88
1536200--1536227	13	2.2	13	100	0	56	39	21	17	21	1.93
1536652--1536681	13	2.3	13	100	0	60	36	13	16	33	1.88
1536631--1536697	33	2.0	33	91	5	109	34	19	13	32	1.91
1536726--1536778	19	2.7	20	91	2	90	35	15	18	30	1.92
1536767--1536791	13	1.9	13	100	0	50	32	16	16	36	1.90
1545766--1545791	13	2.0	13	100	0	52	30	23	15	30	1.95
1545747--1545811	32	2.0	32	87	6	94	38	20	13	27	1.90
1551718--1551756	13	3.0	13	92	0	60	33	17	12	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1551877--1551923	21	2.3	20	78	10	51	34	19	2	44	1.62
1555180--1555214	16	2.2	16	94	0	61	60	0	0	40	0.97
1555741--1555782	22	2.0	21	90	4	66	54	4	2	38	1.34
1555746--1555790	22	2.1	22	84	12	58	53	4	6	35	1.47
1555878--1555902	13	1.9	13	100	0	50	16	40	12	32	1.84
1556597--1556632	18	1.9	19	94	5	65	38	0	2	58	1.13
1556606--1556735	20	6.8	20	72	13	67	40	2	0	56	1.12
1561497--1561814	171	1.9	171	91	0	528	38	9	16	36	1.80
1561679--1561958	150	1.9	149	93	0	488	37	9	16	36	1.81
1567415--1567480	20	3.7	20	73	26	83	34	18	12	34	1.88
1567415--1567493	13	7.1	12	69	25	66	34	17	12	35	1.88
1567416--1567494	33	2.4	33	100	0	158	34	17	12	35	1.88
1567523--1567571	20	2.5	19	86	3	62	36	18	16	28	1.92
1567523--1567575	19	2.7	20	88	2	72	37	18	15	28	1.91
1567564--1567588	13	1.9	13	100	0	50	32	16	16	36	1.90
1567545--1567609	33	2.0	32	88	8	96	38	15	15	30	1.88
1569716--1569741	13	2.0	13	100	0	52	38	15	15	30	1.88
1577327--1577480	69	2.2	71	89	2	231	40	12	17	29	1.86
1584296--1584360	32	2.0	32	84	3	85	32	15	10	41	1.81
1584412--1584476	33	2.0	32	85	11	87	33	16	18	30	1.94
1585599--1585651	20	2.6	21	82	8	65	30	16	15	37	1.90
1585639--1585663	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1588085--1588121	13	2.8	13	95	0	65	29	16	18	35	1.93
1588318--1588348	8	3.8	8	95	4	53	61	25	0	12	1.32
1590194--1590223	15	2.0	15	100	0	60	13	20	13	53	1.72
1590199--1590232	15	2.3	15	89	0	50	14	20	14	50	1.78
1592666--1592705	3	13.3	3	94	0	71	30	35	0	35	1.58
1593695--1593725	15	2.0	16	93	6	55	12	16	12	58	1.64
1601835--1601907	20	3.7	19	85	7	85	30	13	16	39	1.87
1601873--1602090	63	3.5	64	71	17	226	30	20	17	31	1.96
1601815--1602070	122	2.1	122	98	0	494	30	19	16	33	1.95
1601957--1602029	20	3.7	19	85	7	85	30	13	16	39	1.87
1602079--1602103	13	1.9	13	100	0	50	36	16	16	32	1.90
1602059--1602123	33	2.0	33	90	6	105	35	15	16	32	1.91
1603942--1603988	16	2.9	16	87	0	76	2	23	40	34	1.67
1603925--1603967	22	2.0	22	85	0	59	4	18	44	32	1.71
1603974--1604053	38	2.1	38	85	0	106	11	15	33	40	1.82
1604026--1604072	16	2.9	16	84	6	51	14	19	29	36	1.92
1605238--1605276	16	2.4	16	91	0	60	10	12	25	51	1.71
1605331--1605361	16	1.9	16	93	0	53	16	3	32	48	1.62
1606402--1606456	20	2.7	21	83	11	69	32	18	12	36	1.88
1606485--1606554	19	3.6	19	94	1	113	34	17	18	30	1.94
1609776--1609843	33	2.1	32	88	2	100	33	13	19	33	1.90
1609884--1609936	20	2.6	21	82	8	65	30	15	15	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1609924--1609948	13	1.9	13	100	0	50	36	16	16	32	1.90
1614055--1614084	14	2.1	14	100	0	60	43	13	13	30	1.82
1614111--1614166	19	2.9	19	89	2	76	33	16	17	32	1.92
1616456--1616705	140	1.8	136	82	5	322	29	9	10	50	1.69
1617052--1617098	21	2.2	21	85	14	62	78	0	17	4	0.90
1620223--1620263	20	2.0	20	95	0	73	41	31	21	4	1.74
1620432--1620557	47	2.7	47	90	1	200	46	15	36	2	1.59
1620432--1620544	24	4.8	23	89	4	181	44	15	38	1	1.58
1621541--1621579	15	2.6	15	83	0	51	79	0	2	17	0.84
1623151--1623847	157	4.5	157	81	4	673	25	17	19	37	1.93
1623151--1623928	157	5.0	153	77	8	630	25	17	19	37	1.93
1626523--1626547	12	2.1	12	100	0	50	24	24	12	40	1.88
1627447--1627494	9	5.2	9	80	14	53	85	6	6	2	0.81
1637477--1637597	52	2.3	52	97	0	224	28	18	18	34	1.94
1637477--1637617	52	2.7	51	90	4	212	30	17	18	33	1.94
1637606--1637630	13	1.9	13	100	0	50	36	16	16	32	1.90
1637670--1637739	33	2.1	33	89	0	104	40	14	11	34	1.82
1637695--1637719	13	1.9	13	100	0	50	32	16	16	36	1.90
1642521--1642572	20	2.7	20	87	3	70	30	15	15	38	1.88
1642617--1642647	13	2.4	13	94	0	53	35	16	12	35	1.87
1643450--1644347	35	25.3	35	78	7	643	23	23	11	41	1.87
1643457--1644351	215	4.2	212	78	7	816	23	24	11	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1644027--1644066	20	2.1	19	85	4	53	25	27	7	40	1.82
1643992--1644158	55	3.1	55	83	0	192	23	26	9	40	1.85
1643448--1644328	250	3.6	247	78	6	750	23	23	11	41	1.86
1644081--1644121	20	2.1	20	90	4	66	21	29	9	39	1.86
1644486--1644757	85	3.2	85	81	4	325	18	20	12	48	1.80
1646853--1646920	19	3.9	19	78	21	85	35	11	14	38	1.83
1646855--1646917	32	2.0	32	96	0	117	34	12	15	36	1.86
1646874--1646898	13	1.9	13	100	0	50	36	16	16	32	1.90
1646960--1646985	13	2.0	13	100	0	52	30	15	15	38	1.88
1646940--1647002	33	1.9	33	86	0	90	25	14	17	42	1.87
1649409--1649795	104	3.7	104	73	12	304	28	27	13	30	1.94
1649517--1649685	52	3.2	52	78	9	184	30	24	12	32	1.92
1649343--1649684	104	3.3	103	72	14	302	30	25	11	32	1.91
1649669--1649745	28	2.8	28	87	0	100	23	33	19	23	1.97
1649350--1649741	211	1.9	212	86	3	576	29	26	12	31	1.93
1649345--1649792	211	2.1	211	83	4	564	29	26	12	31	1.93
1650894--1650931	16	2.4	16	86	8	51	86	0	13	0	0.56
1650900--1650938	18	2.2	18	90	9	62	79	0	17	2	0.84
1652224--1653000	157	5.0	157	79	5	709	25	16	19	38	1.92
1654757--1654798	21	2.0	22	90	4	68	40	16	11	30	1.85
1656367--1656419	20	2.6	21	82	8	65	28	15	16	39	1.89
1656441--1656491	15	3.0	17	78	21	70	31	7	19	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1656429--1656493	19	3.6	19	82	16	84	29	10	21	38	1.87
1660297--1660326	3	10.0	3	92	0	51	30	0	36	33	1.58
1663611--1663638	13	2.2	13	100	0	56	39	17	14	28	1.89
1663592--1663658	33	2.0	33	91	5	109	41	13	16	28	1.86
1663690--1663739	19	2.6	19	93	0	82	36	20	14	30	1.91
1668321--1668370	22	2.3	23	75	6	59	18	0	22	60	1.37
1668513--1668577	26	2.4	27	92	5	114	32	4	24	38	1.76
1669169--1669195	13	2.1	13	100	0	54	29	14	14	40	1.86
1675417--1675485	33	2.1	32	89	10	104	37	18	11	31	1.87
1675447--1675484	20	1.9	20	94	0	67	39	18	10	31	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30