genome.fa.s160.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold160
Parameters: 2 7 7 80 10 50 1000
Length:  5021213

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  29  of  30  ( 3592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4772749--4772782	17	1.9	18	94	5	61	55	0	0	44	0.99
4772833--4772885	21	2.4	21	81	15	63	39	1	7	50	1.41
4773219--4773266	13	3.8	13	75	2	53	45	0	0	54	0.99
4773216--4773273	25	2.4	25	82	2	73	41	0	0	58	0.98
4774709--4774781	36	2.1	35	87	7	103	21	15	9	53	1.70
4781601--4781644	21	2.2	20	87	4	61	79	0	11	9	0.93
4781566--4782193	308	2.0	303	82	9	760	50	3	5	41	1.41
4782121--4782170	19	2.6	19	84	6	57	48	2	0	50	1.12
4782135--4782186	18	2.8	20	82	8	56	50	0	0	50	1.00
4782151--4782193	18	2.4	18	76	0	50	46	0	0	53	1.00
4782985--4783035	19	2.7	19	85	14	63	52	0	1	45	1.12
4782989--4783035	18	2.5	18	86	13	60	51	0	2	46	1.13
4783851--4783887	12	3.3	12	78	21	53	62	8	0	29	1.24
4784018--4784058	15	2.7	14	85	14	55	68	4	0	26	1.10
4790742--4790886	31	4.7	31	85	10	199	25	30	19	24	1.98
4790742--4790905	62	2.7	63	85	8	214	25	29	17	27	1.97
4790828--4791409	34	18.0	33	72	18	324	21	31	13	33	1.92
4790833--4791408	65	9.0	64	76	14	360	21	31	13	33	1.92
4790964--4791066	37	3.0	37	64	24	98	23	32	10	33	1.89
4790894--4791270	127	3.0	127	84	9	459	22	32	12	31	1.92
4791001--4791402	95	4.2	95	80	11	340	20	33	13	31	1.92
4791283--4791337	27	2.0	27	92	0	92	21	36	14	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4791304--4791414	35	3.1	35	83	5	152	17	32	10	39	1.84
4791412--4791481	33	2.1	35	94	5	126	25	37	17	20	1.94
4791481--4792610	49	23.9	49	86	8	1479	25	26	17	30	1.97
4791481--4792553	141	7.6	141	86	7	1477	25	26	17	30	1.98
4791879--4791945	21	3.1	21	62	26	50	25	29	17	26	1.98
4791481--4792553	281	3.8	281	93	2	1682	25	26	17	30	1.98
4792160--4792226	21	3.1	21	62	26	50	25	29	17	26	1.98
4792614--4792740	67	1.9	68	85	1	175	24	25	12	37	1.90
4793532--4793596	33	2.0	33	87	0	94	33	12	13	40	1.82
4793552--4793576	13	1.9	13	100	0	50	36	16	16	32	1.90
4796860--4796916	28	2.1	28	83	9	73	45	0	1	52	1.11
4797592--4797647	24	2.3	24	87	3	76	28	1	3	66	1.19
4801733--4801788	22	2.6	22	83	5	62	75	14	7	3	1.16
4802605--4802645	20	2.0	22	85	9	59	53	7	2	36	1.42
4802737--4802776	15	2.5	16	88	8	55	42	5	10	42	1.60
4803647--4803682	17	2.1	18	89	5	56	47	2	0	50	1.15
4807210--4807284	20	3.8	19	78	7	87	41	12	13	33	1.81
4807207--4807284	40	2.0	39	89	2	120	41	12	12	33	1.82
4808992--4809039	21	2.3	21	78	3	53	37	6	4	52	1.46
4810130--4810180	23	2.2	23	86	6	68	58	1	0	39	1.09
4810152--4810196	15	3.1	14	81	9	54	64	0	0	35	0.94
4810154--4810208	14	3.8	14	81	11	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4810154--4810202	15	3.2	16	75	13	50	65	0	0	34	0.93
4810608--4810668	20	3.0	20	74	11	61	32	0	0	67	0.91
4811633--4811670	20	1.9	20	89	10	60	42	2	5	50	1.39
4811896--4811929	17	2.0	17	88	11	52	55	0	0	44	0.99
4812872--4812922	19	2.6	19	74	22	52	52	1	3	41	1.31
4812915--4812951	2	18.0	2	88	5	56	51	2	0	45	1.15
4813661--4813715	16	3.6	15	76	11	58	67	0	1	30	1.01
4813984--4814016	13	2.3	15	90	10	52	72	0	0	27	0.85
4814778--4814828	26	2.0	26	88	0	75	39	3	9	47	1.55
4818158--4818190	2	16.5	2	100	0	66	0	48	0	51	1.00
4818265--4818317	26	2.0	26	100	0	106	33	3	3	58	1.34
4818263--4818322	26	2.6	22	79	20	77	33	3	5	58	1.36
4819326--4819366	18	2.4	17	84	11	57	43	2	9	43	1.50
4822376--4823028	27	23.9	27	81	4	342	24	29	14	31	1.95
4822384--4823011	82	7.6	82	82	2	650	24	29	14	31	1.94
4822374--4823168	109	7.2	110	79	5	639	26	28	14	30	1.95
4823019--4823432	28	14.2	28	76	10	291	29	29	16	24	1.97
4822467--4823413	56	17.0	55	75	10	299	26	29	15	28	1.96
4823019--4823432	173	2.4	170	78	8	413	29	29	16	24	1.97
4823328--4823418	32	2.9	32	79	9	91	29	31	17	20	1.96
4823328--4823439	32	3.6	32	77	7	88	30	32	16	21	1.95
4826003--4826241	97	2.5	97	86	2	320	28	28	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4830992--4831038	23	2.1	23	88	4	69	78	6	8	6	1.08
4832720--4832954	97	2.4	97	92	0	398	28	30	12	28	1.93
4841534--4841566	13	2.4	14	90	5	50	54	0	3	42	1.15
4846377--4846425	14	3.4	14	81	13	55	61	0	0	38	0.96
4848955--4848984	16	1.9	15	93	6	51	46	6	0	46	1.29
4849606--4849645	19	2.1	19	85	0	53	45	5	12	37	1.64
4850019--4850074	10	5.7	10	75	10	53	66	0	0	33	0.92
4856015--4856077	23	2.7	24	76	18	62	61	0	0	38	0.96
4856078--4856111	11	3.2	11	87	4	52	41	0	0	58	0.98
4857440--4857500	31	2.0	31	86	0	86	45	14	6	32	1.71
4857568--4857634	35	1.9	35	87	0	98	40	19	5	34	1.76
4858521--4858557	17	2.2	17	90	0	56	37	8	8	45	1.63
4861574--4861626	20	2.6	21	82	11	65	39	13	16	30	1.87
4878786--4878848	28	2.3	27	86	8	92	25	23	22	28	1.99
4883570--4883621	16	3.4	14	76	12	50	84	7	1	5	0.84
4884919--4884981	28	2.3	27	88	2	99	25	25	22	26	2.00
4885156--4885287	32	4.1	32	83	4	160	29	28	15	26	1.96
4885546--4886023	52	9.0	52	71	11	355	24	26	13	35	1.93
4885553--4886042	269	1.8	269	90	0	784	24	26	13	35	1.92
4885752--4886013	104	2.5	105	90	2	395	24	26	14	34	1.94
4885586--4885914	165	2.0	162	83	4	417	25	25	12	36	1.91
4893488--4893528	20	2.0	21	90	4	66	51	14	4	29	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4895249--4895282	11	3.0	11	83	8	50	26	2	0	70	1.01
4895369--4895451	43	2.0	43	83	11	109	45	0	3	50	1.19
4897091--4897130	18	2.1	19	86	9	55	47	0	0	52	1.00
4897339--4897390	18	2.9	17	78	13	52	51	3	0	44	1.19
4897509--4897533	13	1.9	13	100	0	50	28	0	0	72	0.86
4902250--4902324	20	3.8	20	80	3	80	40	12	13	34	1.81
4902247--4902324	40	2.0	39	87	2	111	39	12	12	34	1.82
4902865--4902990	28	4.4	28	88	2	162	23	18	30	27	1.97
4902838--4903423	32	18.8	32	92	3	801	18	18	33	29	1.95
4903406--4904499	27	40.0	27	92	2	1783	27	14	35	23	1.93
4903406--4904499	82	13.3	81	93	2	1783	27	14	35	23	1.93
4903406--4904499	109	10.0	109	92	2	1795	27	14	35	23	1.93
4905774--4905825	23	2.3	23	83	12	63	5	11	7	75	1.19
4905806--4905848	15	2.8	16	79	13	54	4	18	11	65	1.42
4912921--4912995	20	3.8	20	80	3	80	40	12	13	34	1.81
4912918--4912995	40	2.0	39	87	2	111	39	12	12	34	1.82
4913200--4913239	2	20.0	2	89	0	62	50	5	0	45	1.23
4913478--4913980	44	10.5	48	72	14	201	52	4	2	40	1.35
4913529--4913785	107	2.5	103	82	9	274	51	5	3	38	1.43
4913515--4914134	51	12.7	50	68	22	265	52	5	2	40	1.38
4913731--4914006	44	6.3	43	73	16	210	54	4	1	39	1.28
4913679--4914060	138	2.8	138	76	10	335	53	4	2	39	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4913876--4913980	21	4.7	24	64	22	68	50	4	0	44	1.23
4913788--4914112	94	3.5	93	73	18	223	52	4	1	40	1.34
4914237--4914298	22	2.9	22	79	9	67	50	8	6	35	1.58
4914547--4914622	22	3.5	22	83	7	100	47	11	5	35	1.63
4914814--4915176	51	7.1	51	78	9	341	40	2	5	51	1.36
4915207--4915256	24	2.1	24	92	0	82	26	4	4	66	1.27
4915304--4915420	12	9.6	12	70	22	59	39	0	0	59	1.03
4915338--4915420	19	4.5	19	79	14	93	37	0	0	62	0.95
4915284--4915420	26	5.1	26	69	24	79	37	1	0	59	1.11
4915435--4915479	20	2.3	19	80	3	54	22	13	2	62	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30