genome.fa.s160.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold160
Parameters: 2 7 7 80 10 50 1000
Length:  5021213

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  12  of  30  ( 3592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1801571--1801595	13	1.9	13	100	0	50	32	16	16	36	1.90
1803866--1804396	98	5.4	98	91	3	795	32	17	25	24	1.97
1803933--1804396	49	9.5	49	85	3	625	31	17	25	24	1.97
1804321--1804841	171	3.1	171	82	9	616	35	14	26	23	1.93
1804585--1804743	49	3.1	49	76	6	147	35	15	23	24	1.94
1804794--1804926	43	3.1	42	81	9	126	33	17	25	24	1.96
1804823--1804926	43	2.5	42	84	9	131	29	19	25	25	1.98
1804857--1805191	49	7.0	49	89	2	504	32	17	25	24	1.97
1804857--1805191	98	3.5	98	96	2	601	32	17	25	24	1.97
1805191--1805285	32	3.1	30	80	12	106	31	12	33	22	1.91
1805191--1805524	30	10.9	30	83	8	113	32	17	28	22	1.96
1805257--1805555	30	9.7	30	85	5	384	30	18	27	23	1.97
1805237--1805555	62	5.1	62	88	4	405	31	17	28	23	1.97
1805237--1805555	92	3.4	92	91	2	462	31	17	28	23	1.97
1806877--1806964	1	88.0	1	70	0	59	0	3	11	85	0.72
1806868--1806964	15	6.3	15	76	18	92	0	3	12	84	0.73
1806868--1806964	9	10.7	9	79	11	83	0	3	12	84	0.73
1810613--1810655	21	2.0	21	100	0	86	27	20	23	27	1.99
1813888--1814008	52	2.3	52	97	0	224	28	18	18	34	1.94
1813888--1814028	52	2.7	51	90	4	212	30	17	18	33	1.94
1814017--1814041	13	1.9	13	100	0	50	36	16	16	32	1.90
1814108--1814132	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1826302--1826430	52	2.5	52	98	0	249	27	18	18	34	1.95
1826439--1826463	13	1.9	13	100	0	50	36	16	16	32	1.90
1830498--1830533	13	2.8	13	95	4	65	38	0	13	47	1.44
1831117--1831174	20	3.1	19	80	7	73	36	15	15	32	1.89
1831218--1831248	13	2.4	13	94	0	53	35	19	6	38	1.77
1831205--1831269	33	2.0	33	87	6	96	33	15	12	38	1.85
1857270--1857307	20	1.9	20	94	0	67	34	21	10	34	1.87
1857938--1857983	21	2.1	21	84	11	58	43	6	10	39	1.66
1858082--1858106	13	1.9	13	100	0	50	32	16	16	36	1.90
1858187--1858254	33	2.1	32	88	2	100	36	19	11	32	1.88
1864186--1864216	8	3.8	8	95	4	53	12	0	25	61	1.32
1864407--1864444	13	2.9	13	92	0	58	34	15	18	31	1.92
1864886--1864930	20	2.1	22	84	8	58	20	48	26	4	1.68
1866921--1866973	20	2.6	21	82	8	65	37	15	16	30	1.90
1867034--1867059	13	2.0	13	100	0	52	30	15	15	38	1.88
1867014--1867081	33	2.1	33	88	2	102	35	19	11	33	1.88
1868189--1868223	18	1.9	18	100	0	70	34	34	0	31	1.58
1868301--1868325	13	1.9	13	100	0	50	32	20	0	48	1.50
1873201--1873265	19	3.8	18	75	24	77	32	12	16	38	1.86
1873203--1873272	32	2.2	32	97	0	131	32	12	17	37	1.87
1873222--1873246	13	1.9	13	100	0	50	36	16	16	32	1.90
1873318--1873342	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1873351--1873479	52	2.5	52	92	0	222	35	18	17	28	1.93
1878230--1878284	3	18.3	3	92	0	92	29	32	0	38	1.58
1879427--1879470	23	1.9	24	86	9	65	34	27	9	29	1.87
1879933--1879994	33	1.9	33	86	3	90	41	17	11	29	1.84
1882079--1882192	60	1.9	61	88	1	176	38	16	24	20	1.92
1882147--1882567	52	8.1	51	83	1	466	37	17	23	22	1.94
1882161--1882622	207	2.2	213	84	3	578	35	17	23	23	1.95
1882151--1882622	104	4.5	104	83	2	514	36	16	23	23	1.94
1882151--1882615	155	3.0	152	81	6	403	36	16	22	23	1.94
1882626--1882798	31	5.5	31	84	0	211	20	21	30	27	1.98
1882884--1882943	27	2.2	27	81	0	75	40	8	26	25	1.84
1882844--1883581	95	7.8	95	84	2	851	37	10	29	22	1.88
1882926--1883662	34	22.9	32	70	17	185	36	11	29	22	1.89
1882985--1883133	27	5.0	27	77	13	100	32	12	31	23	1.91
1882979--1883673	68	10.9	61	71	17	226	36	11	29	22	1.89
1883454--1883513	27	2.2	27	81	0	75	35	11	30	23	1.90
1883486--1883677	68	2.8	69	83	4	246	34	12	31	21	1.91
1883196--1883664	95	4.8	102	78	9	300	37	11	29	21	1.88
1883486--1883688	34	6.0	34	66	11	92	36	11	31	20	1.88
1883688--1883795	30	3.6	30	85	6	114	35	14	28	21	1.93
1888163--1888321	32	5.0	31	77	16	157	30	23	13	32	1.93
1888770--1888795	13	2.0	13	100	0	52	46	15	15	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1890670--1890694	13	1.9	13	100	0	50	40	12	16	32	1.84
1891281--1891327	23	2.0	24	84	12	62	61	19	4	14	1.49
1896388--1896630	79	3.1	80	81	7	293	35	12	24	26	1.92
1896506--1896759	129	2.0	130	88	2	377	35	12	23	28	1.91
1896642--1897073	79	5.5	79	81	3	460	34	12	24	28	1.92
1896388--1896917	287	1.8	287	83	7	709	34	12	24	28	1.91
1896434--1896838	208	1.9	208	85	3	548	35	12	23	28	1.91
1896642--1897073	158	2.7	156	81	4	521	34	12	24	28	1.92
1902832--1902886	20	2.8	20	91	0	92	30	18	10	40	1.85
1911785--1911913	51	2.5	52	91	3	206	28	18	17	34	1.94
1911922--1911946	13	1.9	13	100	0	50	36	16	16	32	1.90
1911988--1912053	19	3.8	19	77	22	90	36	18	12	33	1.88
1912009--1912033	13	1.9	13	100	0	50	32	16	16	36	1.90
1911990--1912052	32	2.0	32	100	0	126	34	19	12	33	1.89
1912582--1912930	149	2.4	146	84	6	429	26	19	18	36	1.94
1912582--1913019	148	3.0	147	78	8	444	25	18	18	36	1.94
1915928--1915980	19	2.7	20	85	8	72	28	13	18	39	1.88
1915928--1915986	19	3.0	18	80	14	64	25	11	22	40	1.88
1918016--1918058	20	2.1	20	82	4	50	11	30	41	16	1.83
1918333--1918379	21	2.3	21	82	10	62	44	4	19	31	1.70
1918500--1918564	13	5.0	13	90	0	103	35	13	18	32	1.90
1918500--1918563	26	2.5	26	94	0	119	34	14	18	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1925487--1925512	13	2.0	13	100	0	52	30	15	15	38	1.88
1925572--1925644	20	3.6	20	81	3	101	31	19	13	35	1.91
1925551--1925644	41	2.3	41	96	0	170	30	18	12	38	1.88
1925551--1925626	21	3.7	21	78	3	91	30	17	11	40	1.85
1926280--1926321	21	2.0	21	100	0	84	52	19	4	23	1.65
1928109--1928146	13	2.9	13	96	0	67	31	15	18	34	1.92
1928135--1928211	20	3.6	20	77	16	73	42	15	15	25	1.86
1930220--1930250	15	2.1	15	93	0	53	12	22	16	48	1.80
1934312--1934337	13	2.0	13	100	0	52	30	15	15	38	1.88
1934397--1934469	20	3.6	20	81	3	101	31	19	13	35	1.91
1934376--1934469	41	2.3	41	96	0	170	30	18	12	38	1.88
1934376--1934451	21	3.7	21	78	3	91	30	17	11	40	1.85
1935159--1935241	40	2.1	40	90	0	130	50	16	16	15	1.78
1938541--1938567	10	2.7	10	100	0	54	51	14	11	22	1.73
1938768--1938806	20	2.0	20	94	0	69	30	17	10	41	1.83
1942377--1942427	20	2.6	20	84	3	68	31	19	13	35	1.91
1942476--1942501	13	2.0	13	100	0	52	30	15	15	38	1.88
1942456--1942522	33	2.0	32	86	11	91	32	13	19	34	1.91
1944099--1944133	15	2.3	15	95	0	61	42	0	28	28	1.56
1948804--1948845	21	2.0	21	85	4	57	33	21	4	40	1.74
1951313--1951338	13	2.0	13	100	0	52	30	15	15	38	1.88
1951295--1951359	33	2.0	33	87	6	96	35	13	18	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1952970--1953024	18	2.9	19	77	17	62	21	0	7	70	1.11
1952970--1953025	19	2.9	19	75	15	53	21	0	8	69	1.15
1954761--1954785	2	12.5	2	100	0	50	48	0	0	52	1.00
1954783--1954810	4	7.0	4	100	0	56	25	0	25	50	1.50
1955093--1955128	15	2.5	15	95	4	65	47	8	5	38	1.57
1966063--1966105	9	4.6	9	80	8	50	74	0	4	20	1.00
1968782--1968840	20	2.9	21	80	7	68	40	13	13	32	1.84
1968826--1968869	22	2.0	22	91	4	72	31	13	22	31	1.93
1969526--1969576	17	3.0	17	83	11	68	19	39	0	41	1.52
1970602--1970630	14	2.1	14	100	0	58	27	24	34	13	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30