genome.fa.s160.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold160
Parameters: 2 7 7 80 10 50 1000
Length:  5021213

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  30  of  30  ( 3592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4920941--4921131	67	2.8	67	78	7	215	46	16	13	23	1.82
4923052--4923137	31	2.7	34	81	15	112	47	2	0	50	1.14
4923080--4923168	38	2.4	38	79	9	94	47	3	0	49	1.18
4925394--4925421	2	14.0	2	100	0	56	50	0	0	50	1.00
4926407--4926453	23	2.0	23	95	0	85	46	6	21	25	1.74
4926483--4926550	23	3.0	23	83	12	88	44	2	1	51	1.25
4926750--4926816	21	3.5	19	68	20	50	37	2	0	59	1.13
4927209--4927241	17	1.9	18	88	11	52	39	0	0	60	0.97
4927704--4927746	17	2.5	17	84	0	59	55	2	0	41	1.12
4928078--4928212	18	7.3	18	68	17	66	59	0	2	37	1.13
4928117--4928209	28	3.5	28	74	11	88	58	0	2	39	1.10
4929114--4929168	23	2.4	23	78	0	56	58	1	0	40	1.09
4929548--4929579	16	2.0	16	93	0	55	53	0	3	43	1.16
4930167--4930191	13	1.9	13	100	0	50	36	16	16	32	1.90
4930147--4930212	32	2.0	33	97	2	125	34	12	18	34	1.88
4935268--4935324	28	2.0	28	86	0	78	54	7	8	29	1.58
4936338--4936369	13	2.5	13	100	0	64	50	18	0	31	1.48
4940909--4941037	20	6.5	20	81	12	142	30	19	10	39	1.86
4940909--4941037	41	3.2	40	80	12	142	30	19	10	39	1.86
4940909--4941059	61	2.6	57	85	10	155	30	17	10	41	1.84
4941004--4941038	17	2.1	17	100	0	70	28	22	11	37	1.89
4943708--4943751	2	22.0	2	86	9	63	47	0	4	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4944258--4944337	38	2.2	37	84	8	101	41	7	7	43	1.61
4944365--4944389	2	12.5	2	100	0	50	52	0	0	48	1.00
4944294--4944499	82	2.6	78	83	8	272	30	10	11	48	1.72
4945840--4945934	41	2.3	41	81	3	111	38	11	9	40	1.74
4945860--4945992	40	3.3	41	78	7	121	37	14	11	36	1.82
4947567--4947603	2	18.5	2	100	0	74	51	0	0	48	1.00
4947801--4947845	19	2.3	21	77	14	51	68	2	2	26	1.12
4947778--4947836	26	2.4	26	83	8	79	67	1	0	30	1.00
4947809--4947849	19	2.2	19	90	0	64	70	2	2	24	1.11
4951795--4951829	16	2.3	15	90	5	52	22	0	2	74	0.95
4952465--4952490	2	13.0	2	100	0	52	50	50	0	0	1.00
4952687--4952717	2	15.5	2	100	0	62	0	48	0	51	1.00
4952717--4952747	2	15.5	2	100	0	62	48	0	0	51	1.00
4953374--4953410	18	2.1	18	100	0	74	27	5	16	51	1.66
4955307--4955367	26	2.3	26	85	0	86	31	1	21	45	1.61
4958940--4958969	15	2.1	15	93	6	53	50	0	0	50	1.00
4958969--4959023	15	3.7	15	69	13	51	56	0	1	41	1.10
4958942--4959023	41	1.9	42	83	11	105	53	0	1	45	1.08
4958957--4959022	29	2.5	26	80	11	71	56	0	1	42	1.08
4959469--4959536	2	35.5	2	78	8	52	44	2	5	47	1.42
4959733--4959770	16	2.2	19	86	13	55	73	2	0	23	0.95
4959810--4959852	18	2.4	17	88	7	59	69	6	4	18	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4959811--4959852	17	2.3	18	88	8	59	71	7	4	16	1.26
4960180--4960238	22	2.8	20	78	19	57	57	1	1	38	1.19
4961299--4961357	30	1.9	30	89	6	91	27	0	15	57	1.38
4961299--4961372	16	4.7	16	74	17	66	25	0	14	59	1.36
4961602--4961642	17	2.4	17	83	0	55	58	0	0	41	0.98
4962874--4962907	15	2.1	17	89	10	54	64	0	0	35	0.94
4963636--4963712	40	1.9	40	94	0	136	45	6	6	41	1.56
4964648--4964687	21	1.9	21	89	0	62	57	0	0	42	0.98
4964923--4964962	14	3.1	14	72	20	50	30	7	5	57	1.48
4967334--4967370	16	2.3	16	90	0	56	67	0	0	32	0.91
4967696--4967741	22	2.0	24	83	8	60	39	2	6	52	1.40
4967686--4967757	37	1.9	37	88	0	108	40	2	5	51	1.40
4969745--4969782	20	1.9	20	89	10	60	57	0	0	42	0.98
4970799--4970831	2	16.5	2	100	0	66	51	0	0	48	1.00
4973361--4973404	19	2.2	20	84	4	54	56	11	4	27	1.53
4973585--4973627	22	2.0	22	85	0	59	55	0	6	37	1.27
4973678--4973719	16	2.6	16	88	7	59	2	16	0	80	0.81
4973681--4973748	4	16.5	4	74	17	50	4	19	0	76	0.95
4977608--4977669	2	32.5	2	76	9	58	46	0	3	50	1.17
4977605--4977666	31	1.9	33	90	6	101	46	0	3	50	1.17
4979186--4979244	21	2.7	21	76	5	55	54	1	1	42	1.20
4979523--4979551	14	2.0	15	93	6	51	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4980538--4980587	18	2.9	17	83	13	59	52	2	0	46	1.12
4981510--4981564	19	2.9	18	82	12	58	47	1	0	50	1.11
4981525--4981564	18	2.2	19	86	13	57	55	2	0	42	1.13
4982846--4982884	19	2.1	19	90	0	60	46	0	2	51	1.14
4983247--4983274	13	2.2	13	100	0	56	53	0	0	46	1.00
4983243--4983318	18	4.3	18	67	29	56	59	0	1	39	1.06
4983216--4983319	52	2.0	52	92	3	174	57	0	0	41	1.05
4983722--4983841	13	9.8	13	72	17	55	59	0	2	37	1.17
4983742--4983792	17	3.0	17	82	0	66	62	0	0	37	0.95
4983765--4983961	27	7.4	27	65	23	80	60	1	1	37	1.13
4983826--4983905	32	2.4	32	85	6	106	52	1	1	45	1.16
4983719--4983905	10	18.0	10	71	18	84	57	1	2	39	1.18
4983932--4983959	9	3.1	9	100	0	56	78	0	0	21	0.75
4984157--4984219	20	3.2	21	80	14	64	33	0	0	66	0.92
4984247--4984332	43	2.0	41	85	12	113	46	1	5	46	1.34
4984904--4984937	11	3.1	11	88	12	52	52	0	0	47	1.00
4985382--4985427	18	2.4	19	82	17	60	39	0	0	60	0.97
4985441--4985512	37	1.9	36	81	13	83	33	4	1	61	1.24
4985859--4985902	23	1.9	23	86	9	63	43	0	2	54	1.12
4986208--4986236	14	2.0	15	93	6	51	34	3	0	62	1.12
4986318--4986365	19	2.3	21	86	10	64	64	6	4	25	1.35
4987175--4987215	16	2.5	17	88	4	57	17	4	17	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4995062--4995121	19	3.0	20	75	18	61	56	3	5	35	1.37
4997033--4997086	20	2.7	20	91	5	83	37	18	12	31	1.89
4997114--4997171	19	3.1	18	76	11	62	36	18	12	32	1.88
4999698--4999724	13	2.1	13	100	0	54	40	14	14	29	1.86
4999758--4999841	20	3.7	20	70	27	69	34	16	10	38	1.84
5004335--5004369	18	1.9	18	94	0	61	31	28	0	40	1.57
5005951--5006003	13	4.5	13	73	26	64	35	16	15	32	1.90
5005951--5006019	33	2.1	32	89	10	104	36	18	14	30	1.91
5006047--5006104	19	3.1	18	85	11	80	32	15	15	36	1.89
5006069--5006131	32	1.9	33	90	3	101	39	12	15	31	1.85
5014778--5014814	14	2.8	13	88	8	56	86	8	0	5	0.70
5014776--5014832	29	1.9	29	83	16	73	84	5	5	5	0.88
5015801--5016238	61	7.2	61	76	3	362	26	24	17	31	1.97
5015826--5016188	120	3.0	121	82	2	426	26	23	18	30	1.98
5015839--5016194	181	2.0	180	80	0	406	27	23	18	30	1.98
5016877--5016932	20	2.7	20	83	10	69	32	14	10	42	1.80
5018983--5019038	31	1.9	27	82	13	67	21	16	17	44	1.86
5019011--5019276	128	2.1	128	82	6	315	28	21	11	37	1.89
5019141--5019362	78	2.8	78	87	2	329	30	24	10	34	1.89
5019219--5019509	129	2.3	129	85	3	390	28	23	10	37	1.88
5019297--5019411	51	2.3	50	83	3	140	27	25	10	36	1.89
5019313--5019411	51	1.9	51	87	0	144	27	23	10	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5019033--5019488	206	2.2	206	81	6	510	28	22	11	37	1.88
5019291--5019572	129	2.2	127	80	9	297	29	24	10	35	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30

The End!