genome.fa.s166.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold166
Parameters: 2 7 7 80 10 50 1000
Length:  2719372

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  10  of  18  ( 2078 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1717352--1717377	13	2.0	13	100	0	52	30	15	15	38	1.88
1719950--1719986	13	2.8	13	95	0	65	32	16	18	32	1.93
1722067--1722097	15	2.1	15	93	0	53	12	22	19	45	1.84
1723900--1723944	21	2.1	21	84	8	56	22	20	4	53	1.63
1726144--1726217	21	3.6	21	90	5	116	27	12	14	45	1.80
1726264--1726317	20	2.7	20	88	5	74	29	14	14	40	1.86
1732305--1732804	28	17.5	28	78	4	478	29	30	18	22	1.97
1732332--1732489	59	2.7	58	91	1	253	30	27	17	24	1.97
1732299--1732836	86	6.2	84	80	4	538	28	30	17	23	1.97
1732305--1732836	114	4.6	113	82	4	555	28	29	18	23	1.97
1732918--1733035	49	2.5	46	80	8	121	22	26	19	31	1.98
1740359--1740408	19	2.6	19	96	0	91	36	22	16	26	1.94
1741747--1741969	48	4.9	48	72	16	197	30	17	26	25	1.97
1741708--1741969	87	3.0	87	85	5	319	29	17	26	25	1.98
1741708--1741962	39	5.9	43	71	15	132	28	18	26	26	1.98
1741986--1742330	28	12.4	28	84	5	391	17	18	30	33	1.94
1742684--1742765	37	2.2	37	100	0	164	43	13	15	26	1.84
1743791--1743842	4	14.2	4	76	15	51	0	0	17	82	0.66
1743789--1743840	13	4.1	12	85	11	68	0	0	15	84	0.62
1743789--1743840	18	3.0	17	86	13	79	0	0	15	84	0.62
1758843--1759749	454	2.0	454	93	0	1537	31	20	19	28	1.97
1761385--1761688	157	1.9	157	89	1	466	37	19	17	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1763061--1763090	13	2.3	13	94	0	51	36	13	13	36	1.84
1763044--1763111	33	2.1	33	85	0	91	38	11	16	33	1.85
1765476--1765510	18	1.9	18	100	0	70	17	25	22	34	1.96
1769832--1769857	13	2.0	13	100	0	52	38	15	15	30	1.88
1769912--1769950	20	1.9	21	94	5	71	43	10	10	35	1.73
1772075--1772119	21	2.1	21	84	8	56	53	4	20	22	1.63
1773922--1773952	15	2.1	15	93	0	53	48	16	22	12	1.80
1775966--1776045	20	3.8	20	75	15	79	26	15	15	43	1.85
1776031--1776069	13	3.0	13	96	0	69	30	17	15	35	1.91
1776190--1776236	21	2.3	21	79	20	55	34	19	4	42	1.70
1776192--1776234	20	2.2	19	84	16	52	32	18	4	44	1.71
1778610--1778635	13	2.0	13	100	0	52	38	15	15	30	1.88
1781758--1781796	20	1.9	21	89	5	62	41	20	17	20	1.91
1784055--1784377	163	2.0	164	84	8	424	54	7	12	26	1.63
1784236--1784518	148	1.9	151	82	5	360	53	8	12	26	1.67
1788065--1788127	19	3.7	17	76	24	62	33	12	19	34	1.89
1788084--1788108	13	1.9	13	100	0	50	36	16	16	32	1.90
1788063--1788135	32	2.3	32	95	0	128	34	12	19	34	1.89
1788153--1788193	21	2.0	21	100	0	82	41	9	19	29	1.83
1788180--1788205	13	2.0	13	100	0	52	30	15	15	38	1.88
1790563--1790692	51	2.5	53	81	8	167	32	23	10	34	1.88
1790619--1790912	158	1.9	157	85	2	410	28	28	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1791909--1791976	20	3.4	19	80	6	73	42	13	11	32	1.80
1792906--1792984	32	2.5	31	83	4	113	22	20	29	27	1.98
1792961--1793490	28	18.6	28	81	7	541	24	17	29	29	1.97
1793013--1793469	197	2.3	198	85	4	609	24	17	29	28	1.97
1800759--1800806	15	3.2	15	72	0	51	16	2	41	39	1.60
1807188--1807264	20	3.8	20	82	0	100	41	12	14	31	1.83
1808051--1808866	28	28.2	29	83	6	928	25	17	29	27	1.97
1808070--1808863	57	13.8	57	83	6	831	24	17	29	28	1.97
1810099--1810150	1	52.0	1	76	0	50	1	0	9	88	0.59
1810073--1810150	30	2.6	29	86	8	95	2	2	11	83	0.85
1824018--1824072	20	2.8	20	88	0	83	40	14	12	32	1.84
1831197--1831590	208	1.9	208	93	0	680	41	10	18	28	1.85
1832480--1832508	15	1.9	15	100	0	58	27	13	17	41	1.87
1833402--1834097	74	9.6	74	77	6	554	38	13	21	26	1.91
1833394--1834095	149	4.9	148	76	6	582	38	13	21	26	1.91
1833414--1833939	223	2.4	222	82	1	622	39	13	21	25	1.90
1833940--1834095	72	2.2	72	80	10	178	37	14	19	27	1.91
1834989--1835033	23	2.0	23	86	8	65	40	20	8	31	1.83
1835519--1835556	20	1.9	20	88	0	58	34	15	10	39	1.82
1836331--1836398	23	3.2	23	64	23	67	32	13	10	44	1.77
1836333--1836421	40	2.2	40	95	0	160	35	14	10	39	1.80
1838126--1838151	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1842209--1842240	15	2.2	14	94	5	55	28	12	6	53	1.62
1842336--1842377	18	2.3	18	95	4	75	42	7	14	35	1.73
1848237--1848262	13	2.0	13	100	0	52	38	15	15	30	1.88
1850477--1850521	21	2.1	21	84	8	56	53	4	20	22	1.63
1854369--1854448	20	3.8	20	72	15	70	27	15	13	43	1.84
1854434--1854472	13	3.0	13	96	0	69	30	17	15	35	1.91
1857013--1857038	13	2.0	13	100	0	52	38	15	15	30	1.88
1863151--1863907	165	4.6	166	83	6	865	28	10	8	52	1.64
1863151--1863877	161	4.5	162	84	6	848	29	10	7	51	1.64
1863151--1863877	327	2.2	326	85	5	981	29	10	7	51	1.64
1864027--1864061	8	4.5	8	96	3	63	14	0	0	85	0.59
1864766--1865045	43	6.8	43	81	6	330	48	25	21	4	1.69
1864766--1865039	80	3.3	84	82	7	328	48	24	21	4	1.69
1864890--1864958	21	3.0	25	66	27	71	47	26	24	1	1.60
1864846--1865068	123	1.8	123	85	0	302	48	25	21	4	1.68
1865073--1865120	25	2.0	24	84	12	62	60	18	18	2	1.46
1866759--1867041	142	2.0	142	82	4	347	25	19	16	37	1.93
1866901--1868080	156	7.6	155	81	4	1173	23	17	20	38	1.93
1866901--1868080	312	3.8	309	81	4	1320	23	17	20	38	1.93
1866901--1868080	468	2.5	465	82	3	1431	23	17	20	38	1.93
1871554--1871615	9	6.7	9	76	7	52	82	9	6	1	0.91
1871557--1871608	15	3.6	14	80	14	52	84	7	7	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1871557--1871610	16	3.3	17	76	23	53	85	7	7	0	0.75
1871569--1871659	14	6.1	15	73	12	71	79	3	13	4	1.01
1871592--1871659	6	11.2	6	71	20	52	77	1	14	5	1.02
1871603--1871652	24	2.0	25	84	11	66	74	2	16	8	1.15
1872516--1872544	12	2.3	13	94	5	51	89	6	0	3	0.57
1875924--1875975	20	2.6	20	87	0	68	30	15	13	40	1.86
1875964--1875993	13	2.3	13	94	0	51	33	13	20	33	1.91
1877912--1877966	20	2.7	21	77	2	58	45	7	16	30	1.74
1878014--1878068	21	2.6	21	97	0	101	27	14	20	38	1.91
1878949--1879060	52	2.1	51	79	6	116	38	15	23	23	1.92
1879015--1879178	61	2.7	61	81	0	184	40	15	19	24	1.90
1879124--1879227	51	2.0	51	86	0	145	39	15	20	25	1.91
1878954--1879266	173	1.8	174	83	3	425	39	14	21	24	1.91
1879539--1880071	33	16.5	33	77	6	441	20	18	31	30	1.96
1879539--1880094	161	3.4	160	82	6	608	21	17	30	29	1.97
1879614--1880147	193	2.8	193	80	6	522	22	18	30	29	1.97
1880062--1880400	28	11.9	28	83	4	340	25	17	28	29	1.98
1880064--1880430	57	6.4	57	80	2	337	25	17	28	28	1.98
1880064--1880430	85	4.3	84	80	5	378	25	17	28	28	1.98
1880387--1880456	30	2.4	29	83	4	86	27	20	34	18	1.96
1882119--1882158	20	1.9	22	90	10	66	47	5	12	35	1.63
1882256--1882305	19	2.5	20	93	3	84	30	16	16	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1882353--1882392	13	3.1	13	77	0	53	37	15	12	35	1.85
1888382--1888422	21	2.0	21	90	0	64	53	0	26	19	1.45
1888383--1888444	21	3.0	20	81	9	61	54	1	22	20	1.53
1889921--1889946	13	2.0	13	100	0	52	38	15	7	38	1.76
1891442--1891485	22	2.1	21	87	8	63	47	6	9	36	1.62
1891980--1892105	52	2.4	52	95	0	225	36	17	17	28	1.93
1902698--1902732	15	2.3	15	95	0	61	28	28	0	42	1.56
1907629--1907656	13	2.2	13	100	0	56	39	17	14	28	1.89
1907611--1907676	33	2.0	33	85	5	89	40	15	13	30	1.85
1908482--1908583	47	2.2	47	89	0	150	37	14	25	22	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18