genome.fa.s166.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold166
Parameters: 2 7 7 80 10 50 1000
Length:  2719372

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2078 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2690077--2690129	28	1.9	27	81	11	63	22	1	5	69	1.19
2690895--2690951	28	2.0	28	96	0	105	35	12	19	33	1.89
2692312--2692339	13	2.2	13	100	0	56	28	14	17	39	1.89
2699436--2699481	23	2.0	24	86	4	67	80	17	0	2	0.81
2699445--2699484	21	1.9	20	85	10	53	82	15	0	2	0.77
2700748--2701083	61	5.4	60	81	9	356	24	30	15	30	1.95
2700744--2701083	30	11.0	30	81	6	376	23	30	15	30	1.95
2700744--2701132	61	6.3	61	80	8	344	23	30	14	31	1.94
2700751--2701372	30	19.8	33	77	11	296	22	31	14	32	1.93
2700751--2701117	188	1.9	189	84	6	494	23	29	15	30	1.95
2701064--2701370	33	9.6	32	78	14	273	21	31	13	33	1.91
2701068--2701370	94	3.2	92	83	7	365	20	32	12	33	1.91
2700751--2701244	249	2.0	248	81	8	587	23	29	14	31	1.94
2701515--2701722	49	4.3	49	85	1	258	24	25	17	32	1.97
2701533--2701728	98	2.0	98	90	0	311	24	25	16	33	1.96
2702611--2702636	13	2.0	13	100	0	52	38	15	15	30	1.88
2704816--2704997	80	2.3	81	80	9	212	35	14	24	25	1.94
2704972--2705087	51	2.3	51	88	5	173	28	12	27	31	1.92
2705075--2705143	28	2.5	28	81	11	79	27	20	27	24	1.99
2705215--2705354	51	2.7	51	81	4	183	36	12	20	30	1.89
2704882--2705326	239	1.9	238	83	6	578	34	13	24	28	1.93
2706108--2707000	35	26.2	35	81	12	879	19	34	12	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2706327--2706419	27	3.2	27	79	16	105	17	35	15	32	1.91
2706706--2707098	68	5.8	67	73	15	319	22	35	14	26	1.93
2706106--2707050	136	6.9	136	85	9	968	20	34	12	32	1.90
2707002--2707099	32	3.1	31	91	5	160	27	37	18	16	1.92
2707007--2707099	33	2.9	32	93	6	161	29	36	19	15	1.92
2707129--2707843	49	14.8	49	86	3	986	24	26	17	32	1.97
2707127--2707908	98	8.0	98	94	3	1246	24	26	17	32	1.97
2707573--2707843	92	2.9	92	96	1	479	25	24	18	32	1.97
2708779--2708845	33	2.0	33	88	0	98	34	11	13	40	1.81
2708799--2708823	13	1.9	13	100	0	50	36	16	16	32	1.90
2708888--2708912	13	1.9	13	100	0	50	32	16	16	36	1.90
2708921--2709040	52	2.3	52	97	0	222	35	18	17	29	1.94
2712576--2712651	20	3.8	20	78	13	84	43	13	14	28	1.83
2712670--2712720	20	2.5	20	90	0	84	43	15	13	27	1.85
2718359--2718464	20	4.8	21	71	23	65	40	12	17	29	1.86
2718309--2718464	70	2.2	72	85	4	219	41	10	18	29	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!