genome.fa.s166.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold166
Parameters: 2 7 7 80 10 50 1000
Length:  2719372

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  6  of  18  ( 2078 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
884296--884473	90	2.0	90	82	4	216	31	22	10	35	1.87
884386--884792	105	3.8	103	78	4	368	32	22	9	35	1.86
885439--885556	58	2.0	58	91	0	191	28	19	23	27	1.98
890359--890388	15	1.9	16	93	6	53	60	6	23	10	1.52
893271--893370	46	2.2	46	96	1	184	37	25	15	23	1.93
904125--904302	90	2.0	90	81	4	207	32	21	10	35	1.87
904215--904621	105	3.8	104	78	4	363	32	22	9	35	1.86
905268--905385	58	2.0	58	91	0	191	28	19	23	27	1.98
910187--910216	15	1.9	16	93	6	53	60	6	23	10	1.52
913099--913198	46	2.2	46	96	1	184	37	25	15	23	1.93
924036--924442	105	3.8	105	78	5	367	32	22	9	35	1.86
925089--925206	58	2.0	58	91	0	191	28	19	23	27	1.98
930009--930038	15	1.9	16	93	6	53	60	6	23	10	1.52
932921--933020	46	2.2	46	96	1	184	37	25	15	23	1.93
945488--945644	73	2.2	69	80	10	167	30	29	12	28	1.92
945511--945980	73	6.6	73	69	11	226	29	28	14	28	1.95
947974--948673	380	1.9	373	80	7	842	29	16	14	40	1.88
949676--949728	17	3.1	16	83	5	61	3	7	1	86	0.75
954205--954741	141	4.0	133	83	9	585	43	10	10	35	1.75
954232--954743	272	1.9	274	86	4	730	42	10	10	35	1.74
954176--954775	140	4.4	140	83	7	698	43	11	10	34	1.76
956702--957292	294	2.0	293	94	1	1040	31	19	17	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958716--958831	51	2.3	51	85	5	146	28	11	13	46	1.78
961159--961473	79	4.0	80	78	6	307	27	27	11	32	1.92
961159--961429	80	3.4	77	80	7	267	27	27	11	33	1.92
961133--961465	160	2.1	160	82	6	390	27	28	11	32	1.92
961474--961876	79	5.1	78	82	7	413	27	26	11	34	1.91
961474--961818	79	4.4	78	83	5	424	26	25	11	36	1.89
961474--961876	157	2.5	157	84	4	497	27	26	11	34	1.91
962656--963156	262	1.9	260	91	0	822	28	24	20	27	1.99
963630--963686	21	2.7	21	91	0	96	28	21	15	35	1.94
966312--966470	63	2.5	63	89	0	237	33	15	18	32	1.92
966438--966482	20	2.2	20	84	7	56	33	8	22	35	1.85
966832--966958	35	3.8	33	81	11	134	36	12	21	29	1.90
966829--966958	66	2.0	66	86	3	181	36	12	22	29	1.90
971570--971695	67	1.9	66	90	1	198	42	7	20	29	1.80
972438--972596	63	2.5	63	89	0	237	33	15	18	32	1.92
972564--972608	20	2.2	20	84	7	56	33	8	22	35	1.85
972951--973018	35	2.0	35	97	2	129	32	11	26	29	1.92
973991--974022	9	3.8	9	84	16	50	90	0	9	0	0.45
973992--974022	16	1.9	16	100	0	62	90	0	9	0	0.46
978831--978856	13	2.0	13	100	0	52	30	15	15	38	1.88
979564--979607	21	2.1	21	83	8	54	25	31	4	38	1.76
981409--981447	13	3.0	13	100	0	78	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983510--983539	15	2.0	15	93	0	51	13	20	16	50	1.78
985340--985384	21	2.1	21	84	8	56	22	20	4	53	1.63
987575--987600	13	2.0	13	100	0	52	30	15	15	38	1.88
988279--988328	24	2.0	25	81	11	59	60	26	2	12	1.43
990861--990966	40	2.7	40	76	5	115	50	12	19	16	1.76
991177--991346	41	4.2	41	78	5	141	45	15	19	20	1.86
991130--991304	80	2.2	80	80	9	187	44	12	20	22	1.85
991253--991347	41	2.3	41	88	0	145	45	18	17	17	1.86
991443--991544	42	2.5	40	84	9	125	41	13	22	22	1.89
991563--991649	40	2.2	41	83	4	106	48	14	18	18	1.82
992003--992294	66	4.4	66	75	10	240	43	15	22	18	1.87
994730--994771	19	2.3	19	79	4	50	21	7	16	54	1.65
1003290--1003930	62	10.4	61	78	11	415	22	28	11	38	1.88
1003290--1003717	90	4.6	89	78	11	425	22	28	10	37	1.88
1003290--1003930	28	20.8	33	75	14	450	22	28	11	38	1.88
1003569--1003944	27	12.6	27	75	14	187	22	28	10	37	1.88
1003290--1003905	124	5.0	123	76	14	506	21	28	11	38	1.88
1003877--1003952	27	2.8	28	77	2	82	27	30	14	27	1.95
1003969--1004120	33	4.7	33	77	6	129	32	28	16	22	1.96
1004196--1004329	52	2.6	52	79	5	146	23	25	14	35	1.94
1011278--1011652	150	2.5	148	93	2	633	32	20	22	24	1.98
1012725--1012750	13	2.0	13	100	0	52	30	23	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1012840--1012896	22	2.6	22	97	0	105	36	12	22	28	1.90
1012818--1012992	78	2.3	78	97	1	334	37	12	24	26	1.91
1012884--1012914	10	3.1	10	90	0	53	41	6	29	22	1.78
1012918--1012974	22	2.6	22	97	0	105	36	12	22	28	1.90
1012962--1012992	10	3.1	10	90	0	53	41	6	29	22	1.78
1013016--1013152	53	2.6	53	95	1	247	27	17	17	37	1.92
1013122--1013192	20	3.5	20	77	11	74	29	12	16	40	1.86
1013232--1013272	21	2.0	21	85	9	57	39	9	12	39	1.76
1016368--1016715	44	7.9	44	74	8	219	41	17	21	19	1.90
1016404--1016725	88	3.7	86	77	5	261	42	16	21	19	1.89
1017600--1017633	16	2.1	17	88	5	52	47	11	8	32	1.71
1028460--1028896	150	2.9	149	87	1	590	36	18	19	25	1.94
1030457--1030499	22	2.0	22	90	0	68	0	20	0	79	0.74
1031430--1031586	70	2.2	70	94	0	269	34	8	23	33	1.86
1035963--1036009	21	2.3	20	82	7	60	48	12	12	25	1.77
1036709--1036753	21	2.1	21	83	4	54	17	4	6	71	1.25
1042768--1042809	21	2.0	21	86	9	59	30	21	14	33	1.93
1042861--1042917	20	2.8	20	86	0	78	43	10	15	29	1.80
1043850--1043897	20	2.3	20	85	3	60	41	10	16	31	1.82
1043956--1044007	21	2.5	21	87	3	70	38	13	13	34	1.84
1046857--1047020	29	5.7	29	70	11	147	25	24	22	28	2.00
1046849--1047079	58	4.0	58	90	0	345	27	22	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1046857--1047051	29	6.7	31	67	11	117	25	23	22	28	1.99
1049774--1050107	92	3.6	92	87	2	384	29	23	13	33	1.93
1050661--1050811	43	3.5	42	74	6	133	15	17	14	52	1.74
1050607--1050855	86	2.9	86	80	5	281	16	19	15	48	1.81
1050984--1052262	43	30.3	43	65	17	291	19	22	11	46	1.82
1051017--1051582	84	6.7	84	84	2	604	20	22	10	45	1.82
1050984--1051582	252	2.4	251	84	3	779	20	22	10	45	1.82
1051405--1051792	210	1.9	209	85	4	541	20	22	9	47	1.79
1051321--1051876	294	1.9	293	85	4	773	20	22	10	46	1.80
1051605--1052435	170	4.9	169	80	4	775	19	22	11	46	1.82
1051605--1052435	85	9.8	85	80	3	699	19	22	11	46	1.82
1053351--1054018	166	4.1	163	77	8	581	30	12	8	48	1.70
1053351--1054080	331	2.2	327	80	7	798	30	12	8	48	1.70
1053351--1054069	165	4.4	165	76	9	612	30	12	8	48	1.70
1054579--1054620	14	2.9	14	83	13	50	85	4	7	2	0.80
1054577--1054622	23	2.0	23	91	0	74	84	4	8	2	0.83
1055519--1055794	141	2.0	136	83	8	349	34	10	11	43	1.75
1061861--1061909	20	2.4	21	87	12	68	0	20	0	79	0.73
1061861--1061903	10	4.6	9	83	16	52	0	18	0	81	0.69
1062208--1062240	16	2.0	17	94	5	59	69	6	0	24	1.10
1065292--1065383	35	2.6	35	87	5	123	45	7	22	23	1.78
1065211--1065461	116	2.2	115	81	5	274	41	12	21	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1065327--1065644	80	4.0	80	75	8	315	42	12	21	23	1.87
1065317--1065656	81	4.2	82	74	10	333	43	12	21	22	1.86
1065602--1065704	47	2.2	47	89	1	154	50	13	18	17	1.78
1066117--1066353	92	2.6	92	91	0	377	35	13	24	25	1.93
1068276--1068300	3	8.3	3	100	0	50	36	0	32	32	1.58
1068769--1068823	21	2.6	21	80	13	69	65	3	12	18	1.40
1086987--1087066	12	7.3	11	73	16	51	42	0	42	15	1.46
1087010--1087068	9	6.9	9	71	11	52	42	0	42	15	1.46
1086978--1087095	42	2.8	42	85	3	150	44	0	42	13	1.44
1093893--1093922	2	15.0	2	92	0	51	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18