genome.fa.s166.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold166
Parameters: 2 7 7 80 10 50 1000
Length:  2719372

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  11  of  18  ( 2078 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1908385--1908838	208	2.2	204	86	2	622	37	15	24	22	1.92
1908884--1909478	49	12.8	49	72	15	226	30	18	25	25	1.98
1909031--1909322	48	6.7	39	77	11	143	29	20	25	25	1.99
1909073--1909478	48	8.8	48	76	14	392	31	19	24	24	1.98
1908982--1909239	87	3.0	87	91	0	399	29	19	24	25	1.99
1909073--1909371	135	2.2	137	91	3	476	30	20	24	24	1.98
1909157--1909484	91	3.5	90	88	5	451	31	18	24	24	1.98
1909073--1909478	135	2.9	136	85	6	423	31	19	24	24	1.98
1909478--1909817	34	10.6	34	73	17	252	36	12	31	20	1.89
1909531--1909605	32	2.2	34	83	9	100	40	13	29	17	1.87
1909589--1909696	28	3.7	28	74	20	105	38	11	29	20	1.87
1909562--1909707	60	2.4	60	86	5	197	40	12	28	18	1.87
1909562--1909727	61	2.7	60	86	5	201	39	11	28	20	1.87
1909468--1909817	95	3.7	94	79	13	373	36	12	30	20	1.89
1909696--1909817	61	2.0	61	88	0	181	35	11	30	22	1.90
1909777--1910038	93	2.8	92	88	4	384	31	14	30	23	1.95
1909777--1910035	63	4.2	62	84	6	301	30	15	30	23	1.95
1909777--1910038	92	2.8	94	88	3	395	31	14	30	23	1.95
1909798--1910038	30	7.9	30	85	4	311	29	15	30	24	1.96
1911323--1911366	14	3.3	13	84	12	54	2	0	15	81	0.78
1918435--1918462	13	2.2	13	100	0	56	39	17	14	28	1.89
1918417--1918482	33	2.0	33	85	5	89	40	12	15	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1918839--1918918	33	2.4	33	95	0	151	37	15	18	28	1.91
1918854--1918917	20	3.5	20	72	27	79	37	15	20	26	1.92
1919271--1919318	20	2.4	20	92	0	78	31	12	20	35	1.90
1919756--1919842	32	2.5	35	82	13	110	29	16	24	29	1.96
1924038--1924123	11	6.8	12	71	17	50	75	5	0	18	1.00
1924038--1924108	35	2.0	36	84	10	94	76	7	0	16	1.00
1924038--1924108	34	2.0	35	84	10	92	76	7	0	16	1.00
1924256--1924336	33	2.5	33	93	0	135	46	13	25	13	1.80
1924656--1924749	43	2.2	43	96	0	170	46	13	28	10	1.77
1924855--1924896	22	1.9	22	95	0	75	52	9	38	0	1.34
1925457--1925539	30	2.8	30	83	1	96	50	4	15	28	1.64
1930491--1930547	20	2.8	20	83	0	69	36	10	12	40	1.77
1937825--1937916	32	2.7	33	81	15	107	33	21	13	31	1.92
1938363--1938406	20	2.2	20	84	4	54	38	15	13	31	1.87
1938365--1938470	52	2.0	52	88	0	158	39	12	16	32	1.85
1938452--1938486	10	3.5	10	92	0	61	51	8	20	20	1.73
1938455--1938494	20	2.0	20	90	0	62	52	7	20	20	1.70
1941820--1941999	52	3.5	52	92	0	290	31	16	16	35	1.92
1941827--1942019	104	1.9	103	86	3	280	31	17	17	33	1.93
1942008--1942032	13	1.9	13	100	0	50	36	16	16	32	1.90
1943683--1943747	34	1.9	34	93	0	112	47	10	10	30	1.73
1947763--1947789	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1950024--1950127	43	2.4	43	95	0	181	46	17	8	27	1.77
1960823--1960847	13	1.9	13	100	0	50	24	16	16	44	1.86
1960866--1960979	20	5.7	20	82	4	140	28	17	12	41	1.86
1960857--1960979	40	3.0	40	89	1	183	30	18	11	39	1.86
1960864--1960979	60	1.9	60	85	3	162	30	17	12	40	1.86
1965598--1965633	16	2.2	17	90	5	56	66	11	16	5	1.40
1966844--1967518	62	11.0	62	83	5	782	24	28	19	27	1.99
1966850--1967518	185	3.6	184	87	3	882	24	28	19	27	1.99
1967547--1967848	45	6.8	44	76	13	257	19	27	12	41	1.87
1967532--1967809	135	2.1	134	88	2	423	20	27	12	39	1.89
1967655--1967809	47	3.5	44	83	12	160	19	27	14	38	1.90
1967566--1967864	43	6.8	45	76	14	234	19	26	13	40	1.88
1967856--1967957	39	2.6	39	93	3	170	17	29	11	41	1.85
1968593--1968649	20	2.8	20	79	10	71	26	14	14	45	1.82
1971529--1971577	18	2.8	16	82	14	53	85	4	10	0	0.71
1971529--1971586	24	2.4	24	86	11	75	84	6	8	0	0.78
1972609--1972691	37	2.2	37	93	0	139	27	14	15	42	1.86
1972622--1972692	37	1.9	37	100	0	142	28	14	12	45	1.81
1973059--1973353	29	10.3	29	80	8	293	31	28	18	20	1.96
1973052--1973353	57	5.3	57	82	8	314	31	29	18	20	1.96
1973052--1973324	85	3.2	85	82	7	347	31	29	17	20	1.96
1973480--1973631	39	3.7	39	77	14	169	25	25	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1973511--1973680	48	3.7	47	77	13	203	25	25	19	30	1.98
1973388--1973722	87	3.8	87	86	2	402	25	25	19	29	1.98
1978360--1978402	21	2.0	21	86	8	61	39	16	9	34	1.80
1978437--1978493	21	2.8	20	81	5	69	40	15	14	29	1.87
1978588--1978618	10	3.1	10	90	0	53	22	29	6	41	1.78
1978664--1978696	10	3.3	10	91	0	57	24	30	6	39	1.79
1978656--1978739	22	4.0	22	84	6	120	27	25	9	38	1.87
1978812--1978850	13	3.0	13	92	0	69	30	15	17	35	1.91
1980481--1980522	21	2.0	21	85	0	57	42	4	28	23	1.74
1982605--1982629	13	1.9	13	100	0	50	36	16	16	32	1.90
1986253--1986295	17	2.5	17	100	0	86	13	13	4	67	1.38
1986712--1986777	31	2.1	31	94	0	114	36	19	27	16	1.93
1987320--1987412	31	3.0	31	91	0	141	17	41	19	21	1.90
1987804--1987828	13	1.9	13	100	0	50	8	8	16	68	1.38
1988331--1988378	13	3.7	13	74	20	55	77	2	0	20	0.88
1988347--1988378	16	2.0	16	93	0	55	78	3	0	18	0.89
1990689--1990733	21	2.1	21	84	8	56	22	20	4	53	1.63
1992952--1992977	13	2.0	13	100	0	52	30	15	15	38	1.88
1994854--1995329	42	11.4	42	86	1	625	13	30	17	38	1.89
1994854--1995329	126	3.8	126	87	1	688	13	30	17	38	1.89
1996419--1996507	31	2.9	31	82	0	106	17	35	19	26	1.94
1996502--1996566	24	3.0	21	83	16	87	35	38	21	4	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1996511--1996566	24	2.3	24	93	0	103	35	37	23	3	1.72
1997451--1997493	12	3.7	11	84	9	59	79	2	0	18	0.85
2002027--2002125	31	3.3	29	79	12	85	35	7	4	53	1.47
2002075--2002142	31	2.3	29	82	9	84	42	8	4	44	1.55
2006172--2006231	24	2.5	24	97	0	111	36	18	5	40	1.72
2006395--2006604	108	1.9	108	99	0	411	25	19	18	37	1.94
2010980--2011043	24	2.7	24	95	0	110	37	15	4	42	1.68
2013424--2013633	106	2.0	106	97	0	393	25	9	23	41	1.84
2015477--2015505	13	2.1	14	93	6	51	24	0	0	75	0.80
2015613--2015649	14	2.5	15	86	8	58	24	10	37	27	1.88
2017547--2017637	46	2.0	46	100	0	182	24	29	6	39	1.80
2022205--2022230	13	2.0	13	100	0	52	30	15	15	38	1.88
2024788--2024825	13	2.9	13	92	0	58	31	13	18	36	1.89
2028433--2028497	21	3.6	19	73	26	70	44	15	12	27	1.82
2028451--2028476	13	2.0	13	100	0	52	38	15	15	30	1.88
2028433--2028497	34	2.0	33	93	6	114	44	15	12	27	1.82
2033621--2033658	13	2.9	13	92	0	58	34	15	15	34	1.90
2033770--2033815	21	2.2	20	81	11	58	32	19	4	43	1.71
2036181--2036243	34	1.9	33	93	6	110	44	12	12	30	1.80
2037315--2037359	21	2.1	21	84	8	56	22	20	4	53	1.63
2039581--2039605	13	1.9	13	100	0	50	36	16	16	32	1.90
2039557--2039625	32	2.1	34	86	5	97	31	14	15	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2040165--2040191	14	1.9	14	100	0	54	29	25	7	37	1.83
2047336--2047380	15	3.0	15	80	0	54	17	0	40	42	1.50
2053197--2053221	13	1.9	13	100	0	50	32	16	16	36	1.90
2053210--2053350	52	2.7	50	86	6	201	33	18	17	30	1.94
2053230--2053350	52	2.3	52	97	0	224	34	18	18	28	1.94
2059773--2059847	20	3.8	20	78	7	80	40	14	10	34	1.81
2059769--2059847	40	2.0	41	92	2	133	40	15	10	34	1.81
2064150--2064188	22	1.9	20	85	15	53	41	10	5	43	1.61
2066425--2066466	15	2.8	15	85	0	57	50	0	16	33	1.46
2068219--2068256	20	2.0	19	85	10	51	31	13	13	42	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18