genome.fa.s179.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold179
Parameters: 2 7 7 80 10 50 1000
Length:  2991183

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  3  of  18  ( 2159 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318586--318642	21	2.6	22	94	5	98	31	35	0	33	1.58
320511--320547	13	2.8	13	91	0	56	32	21	16	29	1.95
326899--326923	13	1.9	13	100	0	50	32	16	16	36	1.90
327023--327047	13	1.9	13	100	0	50	32	16	20	32	1.94
328846--329049	94	2.2	94	94	0	354	44	11	11	31	1.77
329094--329147	20	2.6	21	85	2	74	29	14	12	42	1.83
329074--329147	21	3.6	21	80	7	80	28	14	14	41	1.86
330065--330104	5	7.8	5	83	5	53	32	0	0	67	0.91
330062--330104	10	4.1	11	85	11	63	34	0	0	65	0.93
330065--330104	16	2.6	15	92	4	62	32	0	0	67	0.91
330095--330141	19	2.4	19	79	10	51	27	10	8	53	1.64
338115--338222	43	2.5	43	79	4	121	50	12	21	15	1.78
338242--338863	44	14.2	44	69	12	156	44	15	20	20	1.87
338415--338845	88	4.8	88	74	5	317	45	15	19	18	1.85
338624--338872	132	1.9	131	82	2	311	43	13	22	20	1.86
338422--338864	44	9.9	44	72	8	241	45	15	20	18	1.86
339409--339650	94	2.6	92	76	12	244	30	12	27	29	1.93
343913--344028	51	2.3	51	87	0	160	30	11	26	31	1.91
343964--344181	79	2.8	78	79	6	237	31	13	26	28	1.94
346355--346380	13	2.0	13	100	0	52	30	23	15	30	1.95
346409--346493	24	3.5	24	68	15	75	38	9	20	31	1.84
346394--346537	37	3.2	47	77	19	164	40	9	19	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346477--346543	14	5.2	14	67	18	56	41	7	20	29	1.80
346608--346744	53	2.6	53	94	1	238	27	17	17	37	1.92
346714--346784	20	3.5	20	75	11	65	29	11	16	42	1.83
346824--346864	21	2.0	21	85	9	57	39	9	12	39	1.76
348064--348089	13	2.0	13	100	0	52	38	15	15	30	1.88
348141--348226	19	4.7	19	68	25	69	37	15	12	34	1.85
348128--348203	32	2.4	32	93	4	127	36	15	14	32	1.88
354928--354975	10	4.7	10	84	5	69	0	14	0	85	0.60
354928--354973	19	2.4	19	92	3	74	0	15	0	84	0.62
355665--355731	37	1.9	35	88	11	102	29	25	11	32	1.92
356190--356215	13	2.0	13	100	0	52	30	15	15	38	1.88
356170--356233	32	2.0	33	87	3	94	28	14	17	40	1.88
356911--356957	21	2.2	21	85	7	60	25	29	4	40	1.75
357328--357395	30	2.2	31	86	5	93	36	27	4	30	1.77
358207--358231	13	1.9	13	100	0	50	32	16	16	36	1.90
358787--358833	23	2.0	24	84	12	62	61	19	4	14	1.49
361357--361423	37	1.9	35	88	11	102	29	25	11	32	1.92
361882--361907	13	2.0	13	100	0	52	30	15	15	38	1.88
361862--361925	32	2.0	33	87	3	94	28	14	17	40	1.88
363125--363186	30	2.1	30	100	0	124	48	9	3	38	1.52
369512--369779	34	7.9	34	85	6	346	34	10	24	29	1.90
371995--372035	21	2.0	21	90	4	66	19	12	17	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381571--381596	13	2.0	13	100	0	52	30	15	15	38	1.88
381635--381711	21	3.8	20	78	3	91	28	15	11	44	1.82
381656--381728	20	3.6	20	81	3	101	31	17	13	36	1.89
381635--381728	41	2.3	41	96	0	170	29	17	12	40	1.86
382349--382443	31	2.9	32	93	6	165	46	25	3	25	1.67
384236--384276	13	3.2	13	89	0	64	34	17	19	29	1.94
386345--386375	15	2.1	15	93	0	53	12	22	16	48	1.80
390436--390461	13	2.0	13	100	0	52	30	15	15	38	1.88
390521--390572	20	2.6	20	100	0	104	34	19	15	30	1.93
393339--393379	21	2.0	21	85	0	55	24	7	9	58	1.55
393567--393609	21	2.1	20	82	4	50	27	16	13	41	1.86
394427--394752	153	2.1	154	79	8	353	28	15	17	39	1.89
403876--403901	13	2.0	13	100	0	52	30	15	15	38	1.88
405355--405393	13	3.0	13	96	0	69	35	15	17	30	1.91
405379--405417	20	2.0	20	94	0	69	51	10	15	23	1.73
409305--409349	21	2.1	21	84	8	56	22	20	4	53	1.63
411565--411590	13	2.0	13	100	0	52	30	15	15	38	1.88
413283--413347	33	2.0	33	96	0	121	44	3	18	33	1.65
413870--413991	60	2.0	61	82	7	151	31	15	19	32	1.93
419207--419402	71	2.7	70	82	7	216	27	18	8	45	1.77
420096--420330	98	2.5	95	76	6	233	19	20	13	46	1.83
420405--420645	98	2.4	98	93	0	392	16	18	17	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422146--422205	6	10.2	6	81	13	63	26	0	1	71	0.95
422146--422202	5	11.0	5	83	9	62	24	0	1	73	0.92
422147--422204	30	1.9	31	89	3	91	24	0	1	74	0.92
422636--422689	20	2.7	20	91	2	81	40	12	16	29	1.86
422745--422880	51	2.6	51	81	5	159	30	13	13	41	1.84
428811--428945	51	2.6	51	86	0	180	29	17	13	39	1.88
435648--435829	49	3.7	49	88	1	256	40	15	17	26	1.89
436467--436593	61	2.1	61	82	2	148	36	13	26	23	1.92
436654--436989	101	3.4	97	79	7	349	32	18	24	24	1.97
436544--436989	202	2.2	196	80	10	524	33	17	24	24	1.96
436539--436949	52	8.0	51	78	6	377	34	16	24	24	1.96
436902--436989	43	2.0	43	91	0	140	28	19	26	26	1.99
436998--437098	32	3.2	32	86	8	127	20	20	29	28	1.98
437086--438098	32	32.4	33	77	12	785	36	12	30	20	1.90
437084--437713	93	6.7	94	75	14	266	37	12	29	20	1.89
437217--437333	28	4.1	26	80	15	81	34	13	29	22	1.92
437463--437520	27	2.1	27	90	6	91	37	8	27	25	1.85
437120--438052	187	5.0	185	77	10	788	36	12	29	20	1.90
437490--437867	61	6.0	61	78	6	323	38	12	27	20	1.90
437689--437985	27	9.9	27	75	14	135	34	13	30	21	1.92
437836--437958	61	2.0	61	85	0	165	35	13	30	20	1.90
439395--439439	18	2.4	18	86	13	65	0	2	13	84	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439363--439439	20	3.8	20	74	17	61	1	7	11	79	1.00
445152--445176	8	3.1	8	100	0	50	76	12	0	12	1.04
445281--445353	32	2.3	32	92	0	119	34	9	17	38	1.83
445283--445345	19	3.7	18	72	24	64	33	9	17	39	1.82
445377--445402	13	2.0	13	100	0	52	30	15	15	38	1.88
447856--447927	28	2.6	28	84	0	90	22	34	19	23	1.96
447910--448133	51	4.4	51	80	1	223	29	25	12	32	1.93
447949--448130	52	3.5	50	80	8	186	30	25	10	33	1.90
461537--461726	100	1.9	101	92	3	321	23	29	18	27	1.98
461640--462291	55	11.3	55	82	10	745	27	29	19	23	1.98
461635--462291	116	5.7	116	88	5	934	27	29	19	23	1.98
463151--463191	21	2.0	21	100	0	82	43	9	19	26	1.82
463199--463223	13	1.9	13	100	0	50	36	16	16	32	1.90
463177--463250	32	2.3	33	88	6	107	32	14	17	35	1.91
463267--463307	21	2.0	21	100	0	82	43	9	19	26	1.82
465653--466040	52	7.4	53	70	12	180	29	27	11	31	1.92
465871--466043	52	3.4	51	80	5	213	28	28	12	30	1.93
465866--466054	104	1.9	100	84	4	252	29	26	11	32	1.92
468541--468597	20	2.8	20	91	0	87	49	8	15	26	1.74
471301--472318	155	6.6	155	81	4	1040	38	19	16	25	1.92
471301--472318	310	3.3	307	83	4	1213	38	19	16	25	1.92
471346--472318	465	2.1	466	82	4	1187	38	20	16	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472754--472785	10	3.1	10	95	4	55	31	0	0	68	0.90
472751--472783	15	2.1	16	88	5	50	30	0	0	69	0.88
473813--473843	6	5.3	6	96	3	55	0	12	0	87	0.55
474449--475087	166	3.9	162	81	9	701	50	8	10	30	1.66
474453--475087	325	1.9	326	84	5	856	50	8	10	30	1.67
476136--476168	17	1.9	17	100	0	66	54	12	6	27	1.60
478289--478328	15	2.5	16	88	8	55	35	2	22	40	1.68
479357--479382	13	2.0	13	100	0	52	30	15	15	38	1.88
479421--479496	21	3.7	21	82	3	109	28	18	11	40	1.86
479441--479514	20	3.7	20	81	3	103	31	20	13	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18