genome.fa.s179.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold179
Parameters: 2 7 7 80 10 50 1000
Length:  2991183

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  7  of  18  ( 2159 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951340--951506	33	5.2	32	69	13	94	42	16	29	11	1.84
951424--951486	32	1.9	33	87	3	92	41	22	28	7	1.82
951499--951544	22	2.0	25	87	12	71	36	15	36	10	1.82
952952--954515	156	10.2	156	78	8	1051	23	16	20	39	1.92
953480--954326	155	5.5	154	80	6	730	22	16	20	40	1.91
953484--954054	309	1.8	309	85	5	814	21	15	22	40	1.91
953588--954521	155	6.0	157	78	6	540	23	16	20	39	1.92
958099--958128	13	2.4	12	94	5	51	73	0	26	0	0.84
959853--960072	90	2.4	89	83	8	243	29	26	14	29	1.95
960383--960451	36	1.9	36	84	0	93	20	24	11	43	1.85
960729--960830	43	2.4	43	85	3	125	18	27	15	38	1.91
960861--960942	42	2.0	42	87	0	119	14	26	23	35	1.93
960926--960965	19	2.1	19	100	0	80	15	20	20	45	1.86
960886--961007	61	2.0	61	90	3	192	14	23	22	39	1.91
960947--961064	42	2.8	42	80	2	121	14	26	20	38	1.91
961082--961293	43	5.0	42	74	6	176	18	28	17	35	1.93
961303--961461	42	3.8	41	78	8	158	16	25	20	37	1.93
961514--961824	43	7.2	43	70	8	123	18	28	15	36	1.92
961983--974198	43	285.8	43	69	9	1571	17	28	17	36	1.93
962568--962644	39	2.0	39	86	0	109	12	32	15	38	1.86
962705--963332	130	4.8	128	78	6	530	15	28	19	36	1.92
962715--963375	218	3.1	213	75	7	571	15	28	18	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963395--963543	42	3.6	41	75	3	129	18	24	18	38	1.92
963782--963906	42	3.0	42	80	4	110	15	25	20	39	1.91
963851--963931	42	1.9	42	87	0	117	19	25	14	39	1.90
963856--963940	42	2.0	42	81	0	98	22	27	12	37	1.91
964031--964187	85	1.8	85	82	5	201	15	27	18	38	1.91
964234--964336	42	2.5	42	79	3	100	19	26	13	40	1.88
964983--965069	42	2.1	42	89	4	131	16	24	19	40	1.91
965132--965251	42	2.9	42	92	2	197	18	23	20	37	1.94
965132--965355	42	5.2	42	83	4	157	17	27	18	36	1.94
966118--967002	425	2.1	425	80	5	982	18	27	16	37	1.93
966756--966890	42	3.2	42	81	4	130	16	25	18	40	1.91
966936--967188	135	1.9	134	80	6	296	20	24	16	37	1.93
967208--967433	84	2.7	85	77	5	197	19	27	18	34	1.95
967320--967554	130	1.8	129	83	0	308	17	29	16	36	1.92
967971--968274	130	2.4	128	77	5	283	18	30	16	35	1.92
969204--969370	84	2.0	84	79	6	178	16	28	17	36	1.92
969215--969764	303	1.8	303	82	2	701	18	28	17	36	1.93
969646--969894	85	2.9	85	77	3	250	17	26	16	38	1.91
969657--969966	171	1.8	171	80	4	374	18	26	17	37	1.92
970146--970280	41	3.3	41	74	13	123	17	30	17	34	1.94
971768--971897	42	3.1	41	75	10	129	15	26	19	38	1.91
971862--972408	298	1.8	298	80	3	661	18	27	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972759--972899	42	3.4	42	78	4	126	16	25	20	37	1.93
972964--974117	388	3.0	382	75	7	993	17	30	16	34	1.93
972960--974059	431	2.5	428	76	8	1066	17	30	17	34	1.93
973789--974198	216	1.9	216	78	6	447	19	29	15	34	1.93
974179--974343	42	3.9	42	77	12	124	15	22	20	41	1.89
974419--974724	43	7.1	42	76	5	209	18	29	17	34	1.94
970393--974739	86	50.8	84	69	11	449	17	28	17	36	1.93
972972--974739	129	13.7	130	68	11	367	17	29	17	35	1.93
974763--974895	42	3.2	42	75	8	117	17	26	18	37	1.93
974990--975138	43	3.5	42	77	6	156	19	29	13	37	1.90
975013--975168	43	3.6	43	79	6	120	20	32	12	34	1.90
975203--975328	42	3.0	42	80	4	139	18	30	17	34	1.94
975256--975345	42	2.1	42	89	0	135	18	28	18	33	1.95
975412--975711	43	7.0	42	74	3	213	16	29	16	37	1.91
975412--975711	86	3.5	85	77	3	285	16	29	16	37	1.91
975741--975894	42	3.7	42	79	5	168	15	21	20	42	1.89
975013--977066	555	3.7	548	78	6	1966	18	28	16	36	1.93
976082--976290	43	4.9	42	80	5	204	19	28	17	35	1.94
976091--976841	86	8.8	86	71	8	327	18	29	16	35	1.93
976208--976302	43	2.2	43	83	3	111	16	30	17	34	1.93
976057--976327	129	2.1	129	77	6	269	19	29	16	34	1.94
976312--976458	42	3.5	42	77	8	147	17	26	17	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
976507--976841	43	7.8	43	80	5	345	17	29	17	35	1.93
976507--976841	130	2.6	129	80	7	385	17	29	17	35	1.93
976861--976987	42	3.0	42	84	0	173	12	27	22	37	1.91
976824--977023	84	2.4	84	76	5	206	15	27	20	38	1.92
977088--977265	43	4.1	42	79	7	178	16	28	17	37	1.92
977298--977405	42	2.6	41	80	10	112	16	26	17	38	1.91
977485--977589	43	2.4	43	90	0	147	16	25	19	39	1.91
977485--977620	43	3.2	43	84	0	137	17	27	18	36	1.94
976637--977636	424	2.4	420	77	8	1022	17	27	18	36	1.93
977760--977913	43	3.6	43	77	4	139	16	28	17	37	1.91
977896--978054	42	3.8	42	79	0	156	15	25	18	39	1.91
978132--978457	43	7.6	43	74	6	212	19	29	15	34	1.93
978209--978457	86	2.9	85	76	6	234	19	28	16	35	1.93
978465--978573	42	2.6	42	79	2	121	19	24	16	39	1.91
978675--978872	43	4.6	41	70	12	114	17	30	16	35	1.92
978892--979032	42	3.4	42	84	5	133	15	27	19	37	1.92
979109--979339	43	5.4	43	75	10	186	18	30	16	34	1.94
979102--979329	85	2.7	83	77	9	219	19	29	17	34	1.94
979584--980332	43	17.5	42	70	9	237	17	30	17	35	1.92
979887--980339	129	3.5	128	78	6	392	16	30	16	36	1.91
980096--980331	131	1.8	130	81	0	292	17	29	16	37	1.91
980598--980686	44	2.0	44	84	4	117	17	29	19	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980633--981976	43	31.3	41	72	11	654	18	29	16	34	1.94
980600--981917	86	15.3	84	73	9	734	18	29	17	34	1.94
980632--981976	129	10.4	127	75	7	844	18	29	16	34	1.94
981684--981917	130	1.8	130	81	3	292	19	32	17	30	1.95
982371--982524	43	3.6	42	75	8	118	18	29	17	35	1.94
983554--983754	79	2.6	78	84	4	235	29	16	28	25	1.97
983551--983751	78	2.6	78	83	2	233	29	16	29	24	1.97
983706--983777	28	2.6	28	88	0	99	23	19	34	22	1.96
986253--986278	13	2.0	13	100	0	52	38	15	15	30	1.88
986232--986298	33	2.0	33	88	0	98	43	16	14	25	1.86
986318--986385	19	3.9	18	76	23	83	38	14	11	35	1.83
986340--986364	13	1.9	13	100	0	50	32	16	16	36	1.90
986321--986383	32	2.0	32	96	0	117	36	15	12	34	1.86
986441--986497	21	2.7	21	97	0	105	36	19	10	33	1.86
986505--986534	15	2.0	15	100	0	60	13	6	0	80	0.91
986792--987465	43	15.8	41	72	10	277	17	27	17	37	1.92
986792--987124	86	3.9	85	80	7	327	16	28	18	36	1.93
986835--987124	129	2.2	129	84	4	370	16	28	18	36	1.93
987473--987603	42	3.1	42	78	4	140	19	25	16	38	1.93
987755--987987	43	5.4	43	76	7	177	17	29	16	36	1.92
988080--988178	42	2.4	42	82	0	126	20	27	17	35	1.94
988297--988591	43	6.8	43	74	9	208	17	30	16	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988287--988456	87	2.0	86	83	3	216	17	30	17	34	1.94
988351--988616	129	2.1	129	80	6	297	18	30	16	34	1.93
988766--989615	43	19.8	43	74	7	487	18	29	18	33	1.95
988292--989617	86	15.5	86	72	7	645	18	29	17	34	1.94
989878--990154	43	6.4	43	75	2	223	16	30	18	34	1.93
989862--990111	130	1.9	130	80	3	288	18	28	17	35	1.94
990495--990708	43	5.0	43	80	13	199	17	29	17	35	1.94
990435--990708	86	3.2	84	77	9	234	17	28	18	35	1.94
990745--990846	42	2.4	42	85	0	123	14	26	19	39	1.90
990780--990876	42	2.3	42	82	3	115	16	26	22	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18