genome.fa.s179.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold179
Parameters: 2 7 7 80 10 50 1000
Length:  2991183

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  9  of  18  ( 2159 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014283--1014580	130	2.3	130	84	4	361	17	31	16	34	1.92
1014605--1014709	42	2.5	42	77	0	111	17	31	20	31	1.95
1014810--1015580	86	9.0	85	71	8	381	17	29	16	35	1.92
1015040--1015144	42	2.5	42	87	3	131	21	26	16	35	1.94
1014713--1015427	384	1.9	384	82	5	908	18	29	16	36	1.92
1015194--1015628	86	5.0	84	75	10	364	17	29	16	36	1.92
1015893--1016225	43	7.7	43	74	6	249	17	30	15	36	1.92
1015891--1016214	132	2.5	129	80	6	343	18	29	16	35	1.93
1015893--1016217	86	3.7	86	79	7	327	18	30	16	35	1.92
1014810--1016214	129	10.9	128	69	10	500	17	29	16	36	1.92
1015205--1016225	86	11.9	84	71	11	326	17	29	16	36	1.92
1016224--1016310	42	2.1	42	86	0	120	20	28	14	35	1.93
1019713--1019754	21	2.0	21	86	9	59	16	26	2	54	1.54
1024621--1024867	97	2.5	96	83	6	257	36	13	21	27	1.91
1027112--1027250	52	2.7	51	84	7	174	42	11	15	30	1.82
1027970--1028063	30	3.2	31	82	5	97	30	19	24	25	1.98
1028082--1028111	15	2.0	15	100	0	60	40	13	20	26	1.89
1028037--1028200	71	2.3	71	97	0	310	32	17	20	29	1.95
1028153--1028182	15	2.0	15	100	0	60	40	13	20	26	1.89
1028186--1028629	30	14.8	30	79	6	362	26	14	29	29	1.95
1029831--1029912	33	2.6	30	81	12	92	12	2	10	74	1.17
1039028--1039079	26	2.0	26	100	0	104	50	15	11	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040065--1040309	97	2.5	97	84	2	312	34	12	24	28	1.92
1042592--1042725	52	2.6	52	80	4	146	42	15	14	26	1.86
1043116--1043159	11	4.2	11	82	5	56	0	20	0	79	0.73
1043113--1043158	8	5.8	8	80	10	58	0	17	0	82	0.67
1043118--1043159	12	3.8	12	81	12	54	0	19	0	80	0.70
1043113--1043155	22	2.0	22	90	0	68	0	16	0	83	0.64
1047393--1047435	9	4.4	9	82	11	50	0	16	2	81	0.79
1047393--1047426	17	1.9	18	94	5	61	0	14	2	82	0.79
1047393--1047436	10	4.6	10	88	2	56	0	18	2	79	0.83
1052869--1052945	20	3.8	20	81	6	93	42	12	14	29	1.83
1057083--1057164	42	2.0	42	100	0	164	32	19	14	32	1.92
1057150--1057247	20	4.8	20	72	20	94	36	11	15	36	1.83
1057312--1057422	49	2.3	49	96	0	204	29	14	19	36	1.92
1058739--1058770	16	2.0	16	100	0	64	43	12	6	37	1.68
1065007--1065041	16	2.2	16	100	0	70	60	0	17	22	1.37
1066151--1066230	22	3.7	21	73	15	74	55	5	0	40	1.22
1066440--1066491	20	2.6	19	84	9	59	32	7	0	59	1.26
1067083--1067111	13	2.1	14	93	6	51	51	0	0	48	1.00
1069960--1069993	6	5.8	6	96	3	61	17	0	0	82	0.67
1070092--1070163	15	4.8	16	69	20	57	43	1	4	51	1.29
1071210--1071244	18	1.9	18	100	0	70	28	0	2	68	1.04
1076541--1076574	4	8.5	4	100	0	68	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1077402--1077510	52	2.1	52	91	0	173	47	4	19	28	1.69
1077406--1077558	50	3.0	51	81	7	152	47	5	20	27	1.71
1078581--1078656	40	1.9	40	83	5	100	53	17	2	26	1.56
1083550--1083721	49	3.5	49	91	1	292	30	18	31	19	1.96
1083550--1083751	49	4.2	49	88	3	288	31	18	29	20	1.96
1083550--1083755	97	2.2	94	90	2	322	31	18	29	19	1.96
1083786--1084896	28	37.9	28	82	7	1051	23	18	28	29	1.98
1083772--1084895	58	19.2	58	83	8	1160	23	18	28	29	1.97
1083814--1084868	292	3.6	289	85	7	1226	23	18	28	29	1.98
1084494--1084722	96	2.4	94	87	5	311	20	18	29	31	1.96
1084713--1085065	28	12.6	28	86	4	282	28	15	28	27	1.96
1084919--1085057	55	2.5	54	86	7	208	31	14	29	24	1.94
1090206--1090231	13	2.0	13	100	0	52	38	15	15	30	1.88
1090283--1090431	14	8.7	19	63	26	82	35	17	10	36	1.85
1090277--1090411	32	4.2	32	98	0	252	37	17	9	35	1.83
1097038--1097162	20	5.7	20	69	22	81	42	13	15	28	1.85
1097351--1097555	97	2.1	96	81	4	243	35	14	22	28	1.93
1099188--1099252	8	7.5	8	71	21	51	16	0	4	78	0.91
1099188--1099252	28	2.5	25	83	16	71	16	0	4	78	0.91
1099204--1099262	28	2.1	28	84	3	75	16	3	3	76	1.06
1099896--1100020	61	2.0	61	92	3	207	37	12	27	22	1.90
1099973--1100526	43	11.7	43	69	17	273	32	17	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100017--1100526	52	10.6	50	73	10	313	32	17	24	24	1.97
1100223--1100363	49	2.9	49	82	4	133	33	19	23	24	1.97
1100272--1100500	95	2.4	94	83	3	284	32	17	24	25	1.97
1100549--1100742	32	6.0	32	79	8	207	20	17	31	30	1.95
1100559--1100736	96	1.9	96	88	7	272	19	15	32	32	1.93
1100872--1102150	33	38.8	33	70	15	583	34	13	30	21	1.92
1100936--1101670	99	7.4	98	79	10	687	34	13	30	21	1.92
1101268--1101449	91	2.0	92	84	3	242	34	13	28	23	1.93
1101624--1101708	38	2.2	38	97	0	161	25	15	36	22	1.93
1101761--1101820	27	2.2	27	82	5	77	38	11	28	21	1.89
1101220--1102111	434	2.1	431	89	3	1375	34	12	30	22	1.91
1102093--1102331	30	7.7	30	75	10	153	34	13	27	24	1.93
1102129--1102313	30	5.9	31	78	11	171	37	14	23	24	1.92
1102131--1102313	63	2.9	62	83	4	224	37	14	24	24	1.92
1105879--1105903	13	1.9	13	100	0	50	36	16	16	32	1.90
1105968--1105992	13	1.9	13	100	0	50	32	16	16	36	1.90
1105946--1106012	33	2.0	33	88	0	98	40	13	11	34	1.81
1111910--1112025	57	2.0	57	91	0	187	37	12	18	31	1.87
1113783--1113846	23	2.8	23	76	9	58	15	0	4	79	0.89
1113804--1113871	28	2.4	27	80	9	75	19	1	2	76	0.99
1113788--1113848	15	3.6	17	74	23	58	14	0	4	80	0.87
1116884--1116924	2	20.5	2	94	0	73	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1117703--1117791	22	4.0	22	85	0	106	43	5	5	44	1.51
1117704--1117794	16	5.6	16	77	5	83	43	5	6	43	1.53
1117703--1117791	6	14.8	6	78	0	88	43	5	5	44	1.51
1123151--1123193	18	2.6	16	77	22	52	53	0	2	44	1.13
1123147--1123194	19	2.6	18	83	9	60	50	0	2	47	1.12
1123732--1123860	48	2.9	47	77	11	119	44	2	2	50	1.27
1123826--1123869	21	2.0	22	86	4	63	47	0	4	47	1.22
1123930--1124012	41	2.0	42	80	4	96	46	1	4	46	1.31
1123982--1124042	27	2.3	26	80	2	68	45	1	3	49	1.28
1123985--1124044	26	2.2	28	80	11	72	48	1	3	46	1.28
1128943--1129006	17	3.9	16	75	18	69	60	1	0	37	1.06
1128924--1129003	16	5.0	15	79	10	70	60	3	1	35	1.23
1128934--1129002	33	2.1	33	83	5	86	62	2	0	34	1.10
1130484--1130513	15	2.1	15	93	6	53	70	0	3	26	1.03
1135681--1135731	16	3.0	16	76	21	50	72	3	1	21	1.11
1135682--1135726	15	2.9	15	86	6	54	73	2	2	22	1.05
1139663--1139705	20	2.2	19	84	12	52	37	13	0	48	1.43
1140069--1140124	21	2.7	21	100	0	112	26	17	19	35	1.94
1140161--1140213	20	2.6	20	75	3	52	47	9	11	32	1.71
1140254--1140291	20	1.9	20	94	0	67	44	5	18	31	1.72
1142809--1142904	50	1.9	51	89	6	151	33	16	9	40	1.81
1142845--1143019	79	2.2	78	86	3	235	27	22	12	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1144629--1144654	13	2.0	13	100	0	52	38	15	15	30	1.88
1144611--1144674	32	2.0	33	87	3	94	40	17	14	28	1.88
1146876--1146925	21	2.3	21	80	10	57	56	4	18	22	1.58
1148723--1148753	15	2.1	15	93	0	53	48	16	22	12	1.80
1150828--1150865	13	2.9	13	96	0	67	34	18	15	31	1.92
1155033--1155099	33	2.0	33	88	0	98	34	11	13	40	1.81
1155053--1155077	13	1.9	13	100	0	50	36	16	16	32	1.90
1155140--1155164	13	1.9	13	100	0	50	32	16	16	36	1.90
1155153--1155296	52	2.8	49	83	8	180	34	18	17	30	1.94
1155173--1155296	52	2.4	52	93	1	205	35	17	17	29	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18