genome.fa.s228.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold228
Parameters: 2 7 7 80 10 50 1000
Length:  4123243

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  11  of  27  ( 3133 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1495093--1495973	255	3.5	253	79	2	836	35	13	31	19	1.91
1496045--1496555	47	10.9	46	77	9	410	39	18	21	20	1.93
1496045--1496556	141	3.6	142	85	2	613	39	17	22	20	1.93
1496650--1497100	132	3.4	131	82	2	548	39	16	21	22	1.91
1496564--1497031	44	10.7	43	69	10	202	40	15	21	22	1.91
1496585--1497031	88	5.1	89	72	11	335	40	16	21	21	1.91
1498167--1498219	20	2.8	20	78	16	67	75	1	0	22	0.90
1498172--1498274	8	12.4	8	69	19	50	74	0	2	21	1.00
1498186--1498287	25	4.4	23	71	18	68	75	2	2	18	1.06
1498452--1498503	19	2.8	19	82	2	70	17	21	13	48	1.81
1500500--1500797	150	2.0	150	91	1	490	26	20	19	34	1.96
1502073--1502535	174	2.6	174	76	6	468	44	12	19	23	1.85
1502391--1502517	44	2.9	44	69	17	111	45	14	18	22	1.84
1502387--1502529	44	3.2	44	68	18	109	46	13	18	21	1.84
1502073--1502527	88	5.2	87	71	7	350	44	12	18	23	1.85
1503521--1503564	7	5.7	7	82	15	52	4	15	0	79	0.89
1518693--1518777	1	85.0	1	73	0	53	84	10	2	2	0.80
1518694--1518777	8	10.9	8	76	5	84	84	10	2	2	0.81
1518693--1518765	9	7.9	9	80	13	69	84	10	2	1	0.78
1518693--1518777	11	7.5	11	79	7	89	84	10	2	2	0.80
1519997--1520663	28	23.1	28	80	8	599	29	29	16	24	1.97
1519997--1520663	85	7.7	85	80	7	668	29	29	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1519997--1520583	113	5.1	114	86	4	697	29	29	16	24	1.97
1521680--1521742	19	3.6	19	76	24	84	34	12	17	34	1.88
1521697--1521721	13	1.9	13	100	0	50	36	16	16	32	1.90
1521680--1521740	32	1.9	32	100	0	122	34	13	18	34	1.89
1521784--1521808	13	1.9	13	100	0	50	32	16	16	36	1.90
1535767--1535860	30	3.2	29	82	10	118	82	9	6	1	0.87
1535762--1535851	1	90.0	1	70	0	54	84	7	6	1	0.83
1537293--1537466	28	6.0	28	77	19	178	33	31	15	20	1.93
1537322--1537602	34	8.9	31	75	18	156	25	31	14	28	1.95
1537288--1537481	60	3.3	59	92	2	309	32	31	14	21	1.94
1537472--1537629	34	4.6	35	86	5	182	19	31	13	34	1.91
1537624--1537919	49	6.1	49	82	8	358	23	26	18	31	1.98
1537977--1538228	49	4.9	51	73	10	201	23	26	17	32	1.97
1538968--1539033	19	3.8	19	77	22	90	33	12	18	36	1.88
1538969--1539031	32	2.0	32	100	0	126	33	12	19	34	1.89
1538988--1539012	13	1.9	13	100	0	50	36	16	16	32	1.90
1542412--1542483	20	3.6	19	85	7	99	31	13	12	41	1.82
1555327--1555375	26	1.9	25	87	4	71	57	0	0	42	0.99
1555354--1555386	17	2.0	16	94	5	57	60	0	0	39	0.97
1558446--1558570	40	3.1	40	91	1	196	43	27	13	16	1.85
1560777--1560826	22	2.3	22	82	3	57	56	10	12	22	1.65
1561207--1561261	28	2.0	27	86	10	76	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1561402--1561431	15	2.0	15	100	0	60	53	0	0	46	1.00
1562959--1563000	22	1.9	22	90	9	68	61	0	2	35	1.09
1562970--1563026	25	2.3	26	78	9	64	59	0	0	40	0.97
1566730--1566776	21	2.3	21	79	20	55	31	4	10	53	1.55
1566951--1567005	24	2.2	24	84	9	67	50	0	3	45	1.19
1570594--1570646	21	2.5	21	82	11	72	30	9	18	41	1.82
1577477--1577565	13	5.9	13	72	27	70	34	13	17	33	1.89
1577457--1577589	32	4.1	32	98	0	248	34	12	18	35	1.87
1577455--1577584	19	7.8	18	70	29	110	33	12	17	36	1.87
1577606--1577630	13	1.9	13	100	0	50	32	16	16	36	1.90
1577639--1577767	52	2.5	52	96	0	231	34	17	19	28	1.95
1584722--1584776	19	2.8	20	86	5	76	38	16	14	30	1.89
1585840--1585874	18	1.9	18	100	0	70	51	5	20	22	1.68
1587881--1587933	19	2.8	18	76	20	54	33	18	15	32	1.92
1597171--1597288	50	2.3	50	87	5	175	31	25	11	32	1.90
1597218--1597395	78	2.3	78	86	4	250	26	29	14	29	1.95
1597129--1597363	129	1.8	129	85	5	332	29	25	12	32	1.92
1597347--1597423	28	2.8	27	86	4	100	22	29	20	27	1.98
1597269--1597480	107	2.0	106	81	0	244	25	26	15	33	1.95
1597380--1597611	79	2.9	80	78	5	256	26	22	15	35	1.94
1603487--1603561	20	3.8	19	75	7	78	42	10	13	33	1.78
1604125--1605251	28	38.6	28	83	6	1092	22	18	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1605219--1605640	27	15.6	27	82	8	452	29	13	31	25	1.94
1605219--1605640	54	7.8	54	84	5	521	29	13	31	25	1.94
1606982--1607029	16	3.1	15	79	8	53	6	14	8	70	1.31
1614076--1614152	20	3.8	20	73	0	73	42	10	12	33	1.77
1616429--1616495	33	2.0	33	88	0	98	34	11	13	40	1.81
1616449--1616473	13	1.9	13	100	0	50	36	16	16	32	1.90
1616536--1616560	13	1.9	13	100	0	50	32	16	16	36	1.90
1616569--1616696	52	2.5	52	94	3	224	33	17	17	30	1.94
1628755--1629749	61	16.6	61	81	7	914	24	26	19	29	1.98
1628759--1629750	122	8.3	121	81	7	1027	24	26	19	29	1.98
1629720--1629795	38	2.0	38	82	5	91	19	28	14	36	1.91
1629713--1630047	83	3.9	84	78	7	331	20	24	12	42	1.87
1629742--1630072	41	7.8	40	75	12	252	20	24	12	42	1.87
1629761--1630047	129	2.2	128	79	10	293	20	24	12	42	1.87
1629742--1630049	42	7.2	42	76	8	266	19	24	12	43	1.85
1630658--1630703	20	2.3	20	92	7	76	28	13	13	45	1.80
1631806--1631860	20	2.8	20	97	0	101	25	12	14	47	1.80
1631875--1631901	13	2.1	13	100	0	54	62	0	37	0	0.95
1633216--1633280	33	2.0	33	93	0	112	33	15	15	35	1.89
1637552--1638333	63	12.2	64	77	8	623	27	22	16	32	1.96
1637552--1638333	125	6.1	122	75	13	505	27	22	16	32	1.96
1638930--1638983	20	2.6	21	91	2	83	42	12	14	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1638947--1639003	20	2.8	20	86	2	69	38	12	17	31	1.87
1639040--1639178	51	2.7	52	84	1	181	33	13	10	43	1.78
1641563--1641675	52	2.2	52	85	1	147	24	24	11	38	1.89
1641532--1641815	130	2.2	131	82	3	349	27	23	11	37	1.89
1641691--1641862	51	3.4	51	74	6	141	29	24	8	37	1.84
1641557--1641940	182	2.1	180	77	5	396	27	24	10	37	1.88
1641793--1642179	81	4.8	79	80	5	363	29	27	10	33	1.89
1641889--1642179	161	1.8	160	83	8	385	29	26	9	33	1.89
1645551--1645715	58	2.8	59	80	5	185	50	15	5	28	1.66
1645595--1645681	29	3.0	29	71	18	81	52	17	2	27	1.56
1645735--1645863	58	2.2	58	78	5	152	50	12	13	23	1.76
1646252--1646299	22	2.3	21	86	10	64	58	8	14	18	1.61
1647698--1647763	10	6.6	10	79	8	64	1	12	1	84	0.75
1647698--1647763	33	2.1	33	85	5	91	1	12	1	84	0.75
1647698--1647763	28	2.4	27	84	2	78	1	12	1	84	0.75
1647697--1647742	6	6.7	7	90	7	53	2	10	0	86	0.64
1648810--1649182	188	2.0	188	91	1	613	44	4	6	44	1.50
1649260--1649308	22	2.3	21	82	10	55	61	0	0	38	0.96
1653458--1654071	152	4.1	152	75	8	448	41	15	15	27	1.88
1653454--1654057	151	4.0	151	76	5	404	41	15	15	27	1.88
1654861--1654962	49	2.1	49	96	0	186	37	19	8	34	1.83
1655244--1655310	29	2.3	30	84	7	84	41	10	4	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1663514--1663626	47	2.4	46	82	8	122	38	16	10	33	1.83
1667031--1667104	16	4.7	16	69	1	51	44	29	12	13	1.80
1667809--1667851	21	2.0	21	83	16	54	46	0	6	46	1.30
1668821--1668881	15	3.7	15	72	23	52	59	1	0	39	1.08
1669365--1669456	48	2.0	44	82	16	107	46	1	0	52	1.07
1670054--1670097	19	2.2	21	80	12	56	63	4	2	29	1.26
1670055--1670097	20	2.2	20	87	4	61	62	4	2	30	1.28
1672879--1673081	99	2.1	98	84	0	262	25	10	19	44	1.83
1675921--1675954	18	1.9	17	88	5	50	61	0	0	38	0.96
1677144--1677169	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27