genome.fa.s228.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold228
Parameters: 2 7 7 80 10 50 1000
Length:  4123243

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  8  of  27  ( 3133 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1030613--1031667	124	8.6	124	85	3	1287	30	19	25	24	1.98
1031090--1031187	49	2.0	49	87	0	142	38	18	23	19	1.93
1031139--1031667	62	8.5	62	87	1	666	30	18	25	24	1.98
1037729--1037852	52	2.4	51	94	1	212	28	18	18	34	1.95
1037861--1037885	13	1.9	13	100	0	50	36	16	16	32	1.90
1037926--1037992	33	2.0	33	88	0	98	40	13	11	34	1.81
1037948--1037972	13	1.9	13	100	0	50	32	16	16	36	1.90
1044082--1044522	101	4.4	100	74	10	321	34	16	23	25	1.95
1044074--1044521	52	8.9	51	75	11	302	34	16	24	25	1.95
1043972--1044517	52	10.9	49	73	9	289	34	16	23	25	1.95
1044036--1044469	145	2.9	146	83	5	498	34	16	23	25	1.95
1044525--1044594	32	2.2	31	82	9	88	22	20	30	27	1.98
1044648--1044791	27	5.3	26	76	14	132	31	16	31	20	1.95
1044672--1044791	54	2.2	54	90	0	186	30	17	30	20	1.96
1046231--1046365	8	15.5	8	70	18	67	2	5	11	79	1.02
1046231--1046286	17	3.3	17	85	5	69	1	1	14	82	0.84
1046244--1046338	20	5.1	18	79	15	88	3	4	12	80	0.98
1055628--1055683	14	3.9	14	77	11	60	42	7	1	48	1.41
1055691--1055724	12	2.8	12	81	0	50	47	5	0	47	1.26
1055720--1055789	25	2.7	27	75	4	72	37	1	4	57	1.27
1056171--1056222	25	2.1	24	82	10	61	46	0	1	51	1.12
1057534--1057578	18	2.6	18	82	3	65	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1062540--1062587	25	2.0	25	91	4	80	58	0	0	41	0.98
1063870--1063955	32	2.7	32	83	7	120	38	3	4	53	1.39
1063868--1063980	32	3.4	32	80	10	111	36	3	5	54	1.40
1064425--1064692	134	2.0	134	93	2	459	33	10	8	47	1.68
1072113--1072206	27	3.6	25	72	19	75	24	8	22	44	1.80
1072944--1072979	2	18.5	2	94	5	65	50	0	50	0	1.00
1073567--1073608	22	1.9	22	90	9	68	61	0	0	38	0.96
1074962--1075120	71	2.2	74	87	5	225	42	4	1	51	1.32
1075089--1075155	35	1.9	34	85	8	91	38	2	1	56	1.24
1075258--1075304	21	2.2	20	82	10	58	38	10	0	51	1.37
1083085--1083193	51	2.1	52	89	1	175	43	13	14	28	1.84
1083249--1083302	20	2.7	20	94	2	90	31	14	11	42	1.81
1095297--1095349	27	2.0	27	100	0	106	26	15	33	24	1.95
1095594--1095627	17	2.0	17	100	0	68	17	5	47	29	1.71
1098238--1098369	61	2.2	61	83	0	174	34	11	31	23	1.90
1098313--1098808	52	9.9	51	74	10	355	33	16	25	25	1.96
1098313--1098602	154	1.9	156	80	5	345	33	15	25	25	1.95
1098571--1098844	43	6.0	43	74	14	215	32	18	24	24	1.97
1098521--1098851	95	3.5	95	91	0	518	32	18	25	23	1.97
1098471--1098845	190	1.9	192	88	3	556	33	17	25	24	1.97
1098918--1099726	27	27.0	27	72	19	332	33	12	31	22	1.91
1098999--1099727	61	11.9	60	76	13	496	34	12	31	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1098999--1099727	121	5.9	120	73	15	516	34	12	31	21	1.91
1099149--1099456	94	3.3	91	84	9	383	35	12	30	21	1.90
1099063--1099722	155	4.3	154	82	8	783	34	12	31	21	1.91
1099432--1099611	93	1.9	93	90	0	288	34	12	30	22	1.91
1099606--1099706	32	3.0	34	85	5	134	37	11	30	19	1.88
1099545--1099722	94	1.9	96	84	4	245	35	12	30	21	1.90
1099650--1100043	33	12.6	30	77	12	205	33	15	29	21	1.94
1099734--1100044	33	9.7	33	80	8	306	33	15	28	22	1.94
1099321--1100029	155	4.5	156	82	6	472	35	13	29	21	1.92
1099720--1100044	128	2.5	126	86	4	429	33	15	28	22	1.94
1106062--1106114	27	2.0	27	88	0	79	24	16	33	24	1.96
1110122--1110179	25	2.3	26	76	8	66	62	1	1	34	1.16
1111234--1111285	21	2.5	20	84	6	59	46	0	1	51	1.12
1111261--1111311	15	3.5	14	79	12	50	41	1	5	50	1.37
1112351--1112398	2	24.0	2	91	0	78	50	2	2	45	1.25
1115742--1115883	50	2.8	50	97	0	266	28	12	7	52	1.65
1115856--1116005	58	2.6	56	83	5	183	28	11	9	51	1.68
1121117--1121142	2	13.0	2	100	0	52	50	0	0	50	1.00
1127976--1128149	77	2.3	76	95	1	312	47	5	8	37	1.58
1128322--1128374	22	2.6	21	80	11	56	54	0	0	45	0.99
1131768--1131820	26	2.0	26	85	7	72	45	15	5	33	1.69
1132681--1132722	20	2.1	20	86	0	57	35	11	21	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1137092--1137116	13	1.9	13	100	0	50	32	16	16	36	1.90
1137070--1137136	33	2.0	33	85	0	89	41	14	10	32	1.80
1141533--1141583	20	2.5	21	75	15	52	43	11	15	29	1.82
1144050--1144378	79	4.2	78	76	6	279	28	23	10	37	1.88
1144338--1144407	28	2.5	27	86	6	95	28	25	15	30	1.96
1146965--1147023	26	2.3	26	100	0	118	38	13	10	37	1.79
1150387--1150639	78	3.2	77	81	8	280	36	11	24	28	1.89
1153205--1153261	21	2.7	21	94	0	87	38	14	19	28	1.90
1156218--1156251	7	4.9	7	85	0	50	82	2	2	11	0.89
1156523--1156568	14	3.2	14	81	6	56	36	0	2	60	1.09
1157442--1157481	14	2.8	14	84	3	53	55	5	2	37	1.35
1162497--1162856	181	2.0	181	89	0	549	35	22	16	25	1.95
1168974--1169475	202	2.5	203	84	4	635	33	18	17	31	1.94
1173008--1173032	13	1.9	13	100	0	50	32	4	0	64	1.12
1173807--1173857	15	3.5	15	78	2	50	41	3	1	52	1.31
1175033--1175063	2	15.5	2	93	0	53	48	0	3	48	1.17
1180668--1180834	90	1.9	90	81	5	203	34	19	13	32	1.90
1185126--1185174	24	2.0	24	92	0	80	12	14	18	55	1.69
1188405--1188468	32	2.0	32	96	0	119	42	21	15	20	1.89
1191233--1191263	3	10.3	3	100	0	62	67	0	0	32	0.91
1194596--1194630	18	1.9	18	88	11	54	71	2	2	22	1.13
1194865--1194901	19	1.9	20	88	5	58	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1195697--1195749	19	2.6	22	74	20	69	26	0	0	73	0.83
1195675--1195765	44	2.1	44	82	12	107	30	1	0	68	0.97
1195711--1195759	17	2.7	18	87	6	64	28	0	0	71	0.86
1196092--1196124	7	4.9	7	85	7	50	27	0	0	72	0.85
1202061--1202158	20	4.7	22	71	19	68	62	0	1	36	1.02
1202121--1202169	13	3.5	13	83	8	53	67	2	2	28	1.13
1203196--1203256	23	2.6	23	89	2	95	50	8	3	37	1.48
1204527--1204571	8	5.6	8	89	0	63	55	2	0	42	1.12
1204527--1204576	10	4.9	10	90	2	64	56	4	0	40	1.18
1204962--1205010	20	2.5	20	82	0	62	10	48	4	36	1.56
1206250--1206377	38	3.3	38	85	12	179	24	19	10	46	1.81
1206259--1206396	43	3.3	43	93	5	223	24	18	9	47	1.78
1206323--1206399	22	3.5	22	70	22	81	25	20	9	44	1.81
1206302--1206375	21	3.5	21	68	23	64	24	21	9	44	1.82
1206414--1206503	5	18.0	5	86	4	83	21	21	8	48	1.76
1206418--1206513	10	9.8	10	82	3	106	20	21	8	48	1.75
1206418--1206513	15	6.5	15	85	4	126	20	21	8	48	1.75
1219695--1220414	42	16.8	41	79	7	611	13	30	20	36	1.90
1219764--1219866	53	2.0	51	86	3	143	14	27	21	36	1.92
1219817--1220404	85	6.9	85	81	6	622	13	30	19	36	1.90
1219817--1220414	127	4.7	127	80	4	643	13	30	19	36	1.91
1220845--1220972	38	3.3	38	85	12	179	24	19	10	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1220854--1220991	43	3.3	43	93	5	223	24	18	9	47	1.78
1220918--1220994	22	3.5	22	70	22	81	25	20	9	44	1.81
1220897--1220970	21	3.5	21	68	23	64	24	21	9	44	1.82
1221021--1221101	5	16.2	5	90	0	108	20	19	6	53	1.67
1221023--1221113	15	6.2	15	88	2	123	20	20	7	50	1.73
1221455--1221548	36	2.6	36	98	0	179	27	42	18	11	1.85
1224597--1224642	21	2.1	22	84	4	58	30	19	30	19	1.97
1226664--1226701	20	1.9	19	89	5	58	15	47	5	31	1.68
1228390--1228423	5	7.0	5	93	6	61	17	0	0	82	0.67
1230195--1230229	18	1.9	18	88	11	54	20	8	0	71	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27