genome.fa.s228.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold228
Parameters: 2 7 7 80 10 50 1000
Length:  4123243

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  4  of  27  ( 3133 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519096--519120	13	1.9	13	100	0	50	36	16	16	32	1.90
519182--519207	13	2.0	13	100	0	52	30	15	15	38	1.88
521562--521906	52	6.6	53	69	14	198	29	25	12	32	1.92
521562--521907	104	3.3	103	72	12	324	29	25	12	32	1.92
521890--521966	28	2.8	28	86	4	93	22	31	19	27	1.98
521563--521946	212	1.8	211	88	4	594	28	26	12	32	1.92
527530--527596	37	1.9	35	88	11	102	29	25	11	32	1.92
528054--528079	13	2.0	13	100	0	52	30	15	15	38	1.88
528034--528097	32	2.0	33	90	3	103	28	14	15	42	1.86
529988--530012	13	1.9	13	100	0	50	32	16	16	36	1.90
533181--533247	37	1.9	35	88	11	102	29	25	11	32	1.92
533705--533730	13	2.0	13	100	0	52	30	15	15	38	1.88
533685--533748	32	2.0	33	90	3	103	28	14	15	42	1.86
541293--541343	5	10.6	5	85	10	63	86	11	1	0	0.66
541295--541349	11	4.7	11	78	17	58	85	10	3	0	0.72
542355--543491	59	19.5	59	87	5	1491	25	27	21	25	1.99
542680--542767	26	3.3	26	64	14	70	28	29	18	23	1.98
542334--543495	348	3.3	348	91	3	1732	25	27	21	25	1.99
542329--543514	407	2.9	407	94	1	2001	25	27	20	26	1.99
544233--544290	21	2.8	21	78	7	73	39	15	12	32	1.84
544326--544393	19	3.9	19	76	21	76	35	13	14	36	1.85
544347--544371	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544433--544458	13	2.0	13	100	0	52	30	15	15	38	1.88
544413--544479	33	2.0	33	88	0	98	25	14	16	43	1.86
546815--547156	52	6.5	54	68	16	173	29	26	11	31	1.92
546931--547003	27	2.7	26	87	10	94	24	35	19	20	1.95
546820--547157	104	3.2	103	71	12	308	29	26	11	31	1.92
547140--547216	28	2.8	28	85	0	91	23	32	19	24	1.97
546818--547221	212	1.9	212	89	3	625	28	27	12	31	1.93
563094--563131	15	2.5	15	86	0	58	39	2	2	55	1.28
563148--563204	29	2.0	29	93	6	98	49	0	0	50	1.00
563381--563431	21	2.5	21	78	15	61	52	1	0	45	1.12
563534--563588	21	2.5	20	80	13	65	49	0	3	47	1.19
565172--565212	15	2.7	14	85	14	55	41	0	0	58	0.98
565172--565212	16	2.6	16	88	11	59	41	0	0	58	0.98
567938--567983	24	2.0	22	87	8	65	52	0	0	47	1.00
568870--568903	17	2.0	17	88	0	50	44	0	2	52	1.16
568998--569176	73	2.5	72	83	7	211	31	2	11	55	1.47
569850--569876	13	2.1	13	100	0	54	29	14	14	40	1.86
569831--569895	32	2.0	32	90	3	103	26	16	16	40	1.90
569860--569917	19	2.9	19	87	5	80	32	15	17	34	1.91
569946--570012	33	2.0	32	88	11	100	38	13	14	32	1.86
581626--581650	13	1.9	13	100	0	50	36	16	16	32	1.90
581691--581757	33	2.0	33	88	0	98	40	13	11	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581713--581737	13	1.9	13	100	0	50	32	16	16	36	1.90
583082--583121	6	6.5	6	86	13	55	80	0	2	17	0.83
583082--583121	20	2.2	17	86	13	53	80	0	2	17	0.83
586597--586631	2	17.5	2	87	0	52	54	2	0	42	1.15
587056--587085	2	15.0	2	92	0	51	53	0	0	46	1.00
587463--587520	22	2.7	20	80	15	62	51	0	8	39	1.33
587471--587519	22	2.2	22	82	10	64	59	0	10	30	1.31
587676--587700	2	12.5	2	100	0	50	52	0	0	48	1.00
587800--587841	18	2.3	19	87	4	68	47	0	11	40	1.40
596049--596280	58	4.0	58	82	0	259	27	10	16	45	1.80
596104--596327	116	1.9	116	81	3	274	26	11	16	45	1.82
597417--597479	18	3.6	17	77	8	56	69	0	4	25	1.07
597422--597474	24	2.2	24	80	12	65	69	0	3	26	1.05
597438--597485	18	2.9	15	77	19	51	75	0	2	22	0.91
598087--598137	24	2.1	25	81	3	59	49	1	5	43	1.38
598256--598296	7	5.7	7	85	2	55	0	24	2	73	0.96
598257--598303	21	2.2	21	84	3	58	2	23	2	72	1.06
599068--599098	15	2.0	16	93	6	55	32	3	0	64	1.09
599078--599111	9	3.4	10	88	12	52	38	0	2	58	1.13
599139--599167	15	1.9	15	100	0	58	34	0	10	55	1.34
599444--599619	92	1.9	93	89	1	273	39	23	13	23	1.90
599996--600038	4	10.8	4	89	0	59	69	0	6	23	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600353--600418	34	1.9	34	93	0	114	34	0	21	43	1.53
601240--601276	2	18.5	2	100	0	74	51	48	0	0	1.00
604039--604097	21	2.8	21	81	0	64	45	0	16	37	1.48
606134--606209	37	2.1	37	92	2	127	50	3	10	35	1.56
611159--611550	156	2.5	154	82	3	448	25	15	18	39	1.91
612711--612765	19	2.8	19	83	5	65	41	12	14	30	1.83
612708--612764	21	2.8	21	78	5	73	40	12	14	33	1.83
613747--613869	19	7.1	18	65	26	68	33	13	16	37	1.87
613769--613863	19	5.7	18	70	27	84	32	13	16	36	1.88
613788--613844	13	3.9	13	74	24	51	33	15	15	35	1.90
613769--613871	32	3.2	32	97	0	188	32	13	17	36	1.89
613919--613963	21	2.1	21	84	8	56	28	11	13	46	1.77
614367--614646	148	1.9	148	94	0	497	33	29	12	24	1.92
622033--622099	33	2.0	33	82	11	82	77	1	16	4	1.00
622379--622408	16	1.9	16	93	6	53	86	3	10	0	0.67
624397--624807	97	4.2	96	81	5	427	33	11	24	30	1.91
624436--624795	194	1.9	194	84	2	483	34	10	24	30	1.89
626071--626111	9	4.6	9	87	9	57	0	14	0	85	0.60
626071--626111	10	4.3	10	84	12	50	0	14	0	85	0.60
627140--627171	15	2.1	15	94	0	55	15	25	12	46	1.81
628109--628826	62	11.7	62	72	9	445	36	13	25	24	1.93
628110--628826	121	5.9	121	74	10	528	35	13	25	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628109--628921	183	4.4	183	90	0	1241	36	13	25	24	1.92
632158--633213	49	21.1	53	74	15	439	33	16	25	25	1.95
632268--632394	67	1.9	68	86	1	184	38	12	25	23	1.90
632066--632479	227	1.8	228	85	3	593	36	15	25	23	1.93
632349--633213	49	17.8	49	80	8	932	32	16	25	25	1.96
633348--633778	34	12.7	35	82	8	414	34	12	33	18	1.89
633348--633839	104	4.9	102	81	7	435	33	13	34	19	1.90
633348--633782	138	3.2	138	90	4	654	34	13	33	19	1.90
633348--633844	34	14.8	33	80	9	408	33	13	34	19	1.90
633586--633848	95	2.7	94	80	12	291	33	12	34	19	1.89
633728--633844	61	1.9	61	92	0	198	28	13	36	21	1.91
635188--635212	12	2.1	12	100	0	50	8	8	8	76	1.18
638480--638604	52	2.4	52	91	0	205	29	16	17	36	1.92
638505--638624	52	2.3	52	88	2	179	31	17	18	32	1.94
638613--638637	13	1.9	13	100	0	50	36	16	16	32	1.90
638676--638733	20	3.0	20	84	2	73	46	13	10	29	1.77
639032--639553	62	8.6	62	74	10	434	38	12	25	24	1.90
639035--639553	121	4.3	122	74	11	474	38	12	25	24	1.90
639032--639593	183	3.1	183	90	1	876	37	12	25	24	1.90
639748--639939	29	6.7	28	76	5	125	25	14	28	31	1.95
639924--640026	31	3.4	29	74	15	91	19	18	32	30	1.96
639936--640034	31	3.2	31	76	11	103	17	22	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639919--640233	62	5.1	61	73	5	231	17	20	31	29	1.96
639960--640234	31	9.0	31	71	8	120	17	21	31	29	1.97
640220--640295	31	2.5	31	77	0	89	15	30	26	27	1.96
640344--640424	30	2.6	31	86	5	119	18	17	29	34	1.94
640258--640597	61	5.8	60	69	18	171	18	20	30	31	1.96
640425--640641	31	7.0	31	74	5	161	19	18	30	30	1.96
640509--640596	30	2.9	31	80	10	90	22	20	27	29	1.99
640613--641604	28	35.1	28	76	7	553	24	18	28	28	1.98
640831--642076	56	22.2	57	74	9	438	23	18	29	28	1.98
641602--642076	28	16.9	28	81	4	474	21	18	31	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27