genome.fa.s228.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold228
Parameters: 2 7 7 80 10 50 1000
Length:  4123243

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  20  of  27  ( 3133 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2961042--2961080	20	2.0	20	95	5	71	33	0	0	66	0.92
2962092--2962294	66	3.1	66	97	0	370	39	7	4	48	1.52
2963102--2963144	22	2.0	22	90	0	68	32	11	16	39	1.84
2963168--2963204	16	2.3	16	90	9	58	35	0	8	56	1.29
2963833--2963915	43	1.9	43	92	0	139	42	4	14	38	1.67
2964958--2964996	19	2.1	19	85	4	53	76	0	5	17	0.96
2966622--2966668	20	2.5	20	83	13	55	42	0	2	55	1.12
2967486--2967518	6	5.5	6	100	0	66	33	0	0	66	0.92
2968383--2968412	15	1.9	16	93	6	53	76	0	23	0	0.78
2968934--2968974	16	2.6	16	84	7	57	43	0	0	56	0.99
2969115--2969149	15	2.4	14	90	4	52	68	0	31	0	0.90
2969201--2969259	10	6.1	10	73	11	52	33	0	0	66	0.92
2969169--2969240	32	2.3	31	81	11	83	33	0	1	65	1.02
2969229--2969275	16	2.9	16	75	15	51	34	0	2	63	1.06
2969301--2969325	13	1.9	13	100	0	50	24	0	4	72	1.02
2969333--2969397	19	3.5	19	75	10	62	36	1	4	56	1.29
2969940--2970001	31	2.0	32	83	3	81	33	3	4	58	1.36
2971870--2971954	16	5.2	16	77	5	80	28	0	14	57	1.37
2971860--2971920	32	1.9	32	86	6	88	31	0	11	57	1.34
2971885--2971932	22	2.2	21	85	14	62	31	0	12	56	1.37
2971956--2972015	24	2.5	24	75	8	59	35	0	0	65	0.93
2972019--2972086	30	2.4	29	79	15	79	41	0	2	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2972052--2972093	19	2.2	19	83	8	50	33	0	0	66	0.92
2972117--2972159	18	2.6	16	79	13	50	44	0	2	53	1.13
2972122--2972157	18	2.0	18	88	0	54	47	0	2	50	1.15
2973319--2973374	16	3.4	16	80	7	60	3	16	37	42	1.65
2973372--2973426	16	3.4	16	89	0	65	3	18	38	40	1.68
2973334--2973427	32	3.0	30	73	11	89	2	18	37	42	1.62
2973319--2973434	48	2.4	48	76	9	110	5	16	36	42	1.70
2975404--2975440	2	18.5	2	100	0	74	48	0	0	51	1.00
2976592--2976628	16	2.2	18	90	9	60	48	0	5	45	1.25
2976590--2976630	17	2.3	19	84	16	61	48	0	4	46	1.23
2978556--2978622	33	2.0	33	94	0	116	16	29	16	37	1.91
2978604--2978650	23	2.0	23	87	0	67	17	23	12	46	1.82
2987187--2987318	42	3.1	42	86	2	167	46	3	41	9	1.51
2992188--2992259	28	2.6	28	86	4	92	22	19	36	22	1.95
2992281--2992417	53	2.6	53	86	4	172	35	13	23	28	1.92
2992400--2992475	27	2.8	27	89	2	107	23	21	31	23	1.98
2994806--2994860	20	2.8	20	82	0	74	45	16	14	23	1.84
2994880--2994951	19	4.2	18	77	22	84	37	13	11	37	1.81
2994902--2994926	13	1.9	13	100	0	50	32	16	16	36	1.90
2994883--2994945	32	2.0	32	96	0	117	36	15	12	34	1.86
2995633--2996530	55	16.3	55	90	4	1334	20	20	30	28	1.97
2995707--2996512	28	29.2	28	59	19	119	20	19	31	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2997528--2997566	11	3.6	11	82	3	53	0	10	5	84	0.76
3002743--3002776	17	2.0	17	88	0	50	5	26	17	50	1.69
3009472--3009678	79	2.6	78	82	3	227	28	17	29	24	1.97
3009689--3009860	52	3.3	51	82	4	193	32	11	25	30	1.91
3009843--3009918	27	2.8	28	89	2	109	21	21	34	23	1.97
3012271--3012296	13	2.0	13	100	0	52	38	15	15	30	1.88
3012316--3012383	19	3.9	18	76	23	83	38	14	11	35	1.83
3012338--3012362	13	1.9	13	100	0	50	32	16	16	36	1.90
3012319--3012381	32	2.0	32	96	0	117	36	15	12	34	1.86
3014438--3014536	16	6.1	16	74	10	76	21	13	23	42	1.87
3015427--3015479	16	3.2	16	79	10	54	18	5	16	58	1.58
3015951--3015995	22	2.0	24	91	8	76	24	13	4	57	1.54
3016839--3016873	17	2.1	17	100	0	70	28	8	5	57	1.52
3021094--3021126	12	2.8	12	90	4	50	18	0	0	81	0.68
3021828--3021860	17	1.9	17	88	11	50	54	0	6	39	1.25
3021854--3021940	42	2.1	42	91	4	140	47	9	2	41	1.48
3022847--3022953	27	4.0	26	73	13	92	57	2	0	39	1.20
3022855--3022948	28	3.4	28	70	20	81	57	3	1	38	1.22
3022979--3023025	22	2.1	23	84	4	60	46	0	0	53	1.00
3025661--3025723	20	3.1	20	75	15	58	52	0	0	47	1.00
3028296--3028343	23	2.1	23	88	7	71	31	2	10	56	1.45
3028117--3028507	197	2.0	197	86	3	545	26	10	11	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3031636--3031673	18	2.1	18	95	0	67	47	18	5	28	1.70
3037196--3037240	23	2.0	23	86	0	63	51	4	6	37	1.49
3043382--3043530	51	2.9	51	87	2	208	31	17	16	34	1.93
3043572--3043656	19	4.7	19	79	18	101	37	17	11	32	1.86
3043610--3043634	13	1.9	13	100	0	50	32	16	16	36	1.90
3043591--3043654	32	2.0	33	96	3	121	34	18	12	34	1.89
3048568--3048600	2	16.5	2	93	0	57	48	0	3	48	1.17
3053725--3053827	13	7.5	13	77	4	53	22	20	25	32	1.98
3053741--3053872	14	9.3	15	73	7	73	25	19	24	31	1.98
3053741--3053877	29	4.9	28	72	7	107	25	19	24	30	1.98
3061155--3061619	117	4.0	117	86	2	583	29	17	17	35	1.93
3062455--3062515	31	1.9	32	83	3	79	37	8	9	44	1.68
3062948--3062976	14	2.0	15	93	6	51	13	3	0	82	0.79
3063195--3063249	27	2.0	27	82	0	65	34	16	14	34	1.89
3063293--3063334	14	2.9	15	82	7	59	26	23	21	28	1.99
3065635--3065672	5	7.8	5	91	2	60	0	18	0	81	0.69
3067234--3067282	2	24.5	2	100	0	98	48	0	0	51	1.00
3067745--3067791	25	1.9	24	87	12	69	34	4	19	42	1.70
3075609--3075682	30	2.5	29	80	6	69	32	1	4	62	1.22
3075657--3075690	17	1.9	18	88	5	52	47	0	2	50	1.16
3075820--3075879	31	2.0	30	83	3	75	43	1	1	53	1.20
3075975--3076047	29	2.5	28	82	13	85	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3075999--3076063	29	2.2	29	88	2	94	53	3	0	43	1.16
3076509--3076609	33	2.8	37	76	15	104	37	0	0	61	1.03
3077114--3077183	22	3.0	23	74	17	65	31	1	1	65	1.10
3077454--3077528	20	3.8	20	74	0	78	36	13	9	41	1.76
3077454--3077531	40	2.0	39	89	2	120	35	12	10	41	1.77
3081155--3081196	16	2.8	15	82	10	59	42	0	0	57	0.99
3081259--3081322	25	2.6	25	94	0	110	23	20	25	31	1.98
3081484--3081515	14	2.2	15	94	5	57	25	0	18	56	1.42
3081552--3081636	37	2.5	33	81	11	84	31	1	4	62	1.23
3082084--3082117	10	3.4	10	83	0	50	85	0	14	0	0.60
3082152--3082190	20	2.0	20	85	5	53	51	0	5	43	1.24
3082492--3082531	15	2.5	16	88	8	55	57	0	0	42	0.98
3082492--3082534	16	2.6	17	85	10	63	55	0	0	44	0.99
3083523--3083577	26	2.0	28	82	6	69	49	0	0	50	1.00
3083683--3083725	21	2.2	21	84	12	56	55	0	0	44	0.99
3083683--3083734	21	2.5	22	81	6	54	61	0	0	38	0.96
3084906--3084946	2	20.5	2	100	0	82	48	0	0	51	1.00
3085728--3085783	28	2.0	28	85	0	76	26	12	25	35	1.91
3086462--3086520	26	2.3	25	82	11	66	22	6	28	42	1.79
3086459--3086525	28	2.5	28	79	18	79	22	5	29	41	1.77
3086494--3086652	81	2.0	79	80	7	176	28	11	22	37	1.90
3086818--3086871	28	2.0	28	88	3	83	27	9	24	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3097560--3097604	24	1.9	23	82	13	56	22	11	8	57	1.60
3097903--3097936	16	2.1	16	94	0	59	47	2	0	50	1.16
3098789--3098837	19	2.6	18	77	20	55	44	0	2	53	1.12
3099418--3099451	18	1.9	17	88	5	50	11	5	14	67	1.39
3100437--3100473	16	2.2	16	90	4	56	24	8	10	56	1.60
3100437--3100475	17	2.3	17	91	8	62	23	7	12	56	1.62
3101117--3101144	2	14.0	2	100	0	56	50	0	0	50	1.00
3101284--3101311	2	14.0	2	100	0	56	50	0	0	50	1.00
3109035--3109072	19	2.0	19	89	0	58	47	5	0	47	1.24
3109166--3109225	25	2.6	22	73	19	59	53	1	0	45	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27