genome.fa.s29.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold29
Parameters: 2 7 7 80 10 50 1000
Length:  5511024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   

This is table  30  of  34  ( 4030 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4720762--4720877	29	4.0	29	80	1	126	24	16	31	28	1.96
4720959--4721031	28	2.6	28	82	6	76	26	20	27	26	1.99
4721079--4721158	29	2.6	31	80	11	112	20	22	32	25	1.98
4721162--4721326	37	4.6	37	79	9	137	26	12	24	36	1.91
4722436--4722461	13	2.0	13	100	0	52	38	15	15	30	1.88
4722414--4722481	33	2.1	32	94	2	118	32	13	17	36	1.89
4731249--4731274	13	2.0	13	100	0	52	38	15	15	30	1.88
4731227--4731294	33	2.1	32	94	2	118	32	13	17	36	1.89
4731327--4731380	20	2.6	21	85	5	74	29	14	12	42	1.83
4731367--4731393	13	2.1	13	100	0	54	29	14	14	40	1.86
4731348--4731410	33	1.9	33	87	6	92	31	14	15	38	1.88
4733110--4733178	17	4.2	16	71	14	52	2	10	5	81	0.97
4733145--4733205	27	2.3	27	83	13	83	1	11	8	78	1.02
4737744--4737773	10	2.8	11	90	10	53	80	0	20	0	0.72
4737785--4737950	84	2.0	83	95	1	296	22	18	11	48	1.79
4742100--4742216	58	2.0	58	86	6	166	29	21	20	29	1.98
4742858--4742926	28	2.5	28	85	0	84	14	20	5	59	1.56
4744346--4744402	20	2.7	21	82	15	73	33	15	12	38	1.85
4751643--4751683	17	2.3	17	87	8	55	80	9	9	0	0.91
4751637--4751707	25	3.0	22	85	12	79	77	9	9	2	1.09
4751643--4751682	18	2.2	19	90	4	64	82	10	7	0	0.84
4751662--4751711	25	2.0	25	92	0	82	72	8	16	4	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4752950--4753120	30	5.5	30	75	16	143	21	29	15	33	1.95
4753005--4753257	34	7.8	34	71	16	164	20	28	13	37	1.91
4752952--4753158	95	2.2	95	92	0	351	20	28	15	35	1.94
4752950--4753120	31	5.5	30	76	16	152	21	29	15	33	1.95
4753078--4753225	63	2.3	64	80	4	165	22	27	13	37	1.91
4753253--4753319	30	2.3	30	84	7	84	23	28	16	31	1.96
4753260--4753342	30	2.5	34	79	15	102	27	28	10	32	1.91
4753260--4753359	35	3.0	34	80	11	109	24	31	12	33	1.91
4753260--4753388	65	2.1	60	81	7	141	23	31	12	33	1.92
4753333--4753385	26	2.0	27	92	3	90	22	33	15	28	1.94
4753354--4753728	68	5.7	65	73	13	249	23	29	10	37	1.88
4753333--4753719	33	12.1	31	70	17	186	22	29	10	36	1.89
4753719--4753778	31	2.0	30	83	6	77	31	35	16	16	1.92
4753719--4753963	32	7.6	31	75	12	151	31	31	17	20	1.95
4753715--4753956	96	2.5	96	81	3	306	31	31	16	20	1.94
4753715--4753937	33	6.9	34	73	15	154	30	31	17	21	1.96
4753981--4754244	86	3.0	86	80	3	285	21	20	18	39	1.93
4754034--4754189	41	3.7	41	71	6	132	21	17	19	42	1.89
4754161--4754350	52	3.7	52	82	2	222	23	24	17	34	1.96
4754148--4754350	104	2.0	104	84	3	266	22	23	18	35	1.96
4759779--4759819	17	2.3	17	87	8	55	80	9	9	0	0.91
4759773--4759843	25	3.0	22	85	12	79	77	9	9	2	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4759779--4759818	18	2.2	19	90	4	64	82	10	7	0	0.84
4759798--4759847	25	2.0	25	92	0	82	72	8	16	4	1.24
4761086--4761256	30	5.5	30	75	16	143	21	29	15	33	1.95
4761141--4761393	34	7.8	34	71	16	164	20	28	13	37	1.91
4761088--4761294	95	2.2	95	92	0	351	20	28	15	35	1.94
4761086--4761256	31	5.5	30	76	16	152	21	29	15	33	1.95
4761214--4761361	63	2.3	64	80	4	165	22	27	13	37	1.91
4761389--4761455	30	2.3	30	84	7	84	23	28	16	31	1.96
4761396--4761478	30	2.5	34	79	15	102	27	28	10	32	1.91
4761396--4761495	35	3.0	34	80	11	109	24	31	12	33	1.91
4761396--4761524	65	2.1	60	81	7	141	23	31	12	33	1.92
4761469--4761521	26	2.0	27	92	3	90	22	33	15	28	1.94
4761490--4761864	68	5.7	65	73	13	249	23	29	10	37	1.88
4761469--4761855	33	12.1	31	70	17	186	22	29	10	36	1.89
4761855--4761914	31	2.0	30	83	6	77	31	35	16	16	1.92
4761855--4762099	32	7.6	31	75	12	151	31	31	17	20	1.95
4761851--4762092	96	2.5	96	81	3	306	31	31	16	20	1.94
4761851--4762073	33	6.9	34	73	15	154	30	31	17	21	1.96
4762117--4762380	86	3.0	86	80	3	285	21	20	18	39	1.93
4762297--4762486	52	3.7	52	81	2	213	23	24	17	34	1.96
4762284--4762486	104	2.0	104	85	3	275	22	24	18	34	1.96
4765718--4765760	12	3.5	13	84	9	63	37	13	9	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4766022--4766059	13	2.8	13	88	11	51	86	5	5	2	0.76
4766156--4766198	19	2.3	19	87	0	59	83	0	11	4	0.78
4766157--4766198	9	4.6	9	85	5	57	83	0	11	4	0.79
4781719--4781812	46	2.0	46	97	0	179	24	23	8	43	1.81
4783827--4783878	28	1.9	26	88	7	77	25	13	34	26	1.93
4784071--4784220	81	1.8	82	86	1	221	36	13	24	25	1.92
4783985--4784337	82	4.4	80	74	7	259	36	10	26	26	1.89
4788935--4789059	52	2.4	52	94	0	214	28	17	17	36	1.93
4788935--4789073	52	2.7	52	86	6	176	29	17	17	35	1.93
4790359--4790396	20	1.9	20	88	0	58	55	10	10	23	1.65
4790330--4790448	51	2.3	51	83	1	148	44	13	13	28	1.81
4790504--4790557	20	2.7	20	82	8	65	29	16	12	40	1.86
4793372--4793452	28	3.0	27	82	8	92	60	6	17	16	1.55
4797049--4797104	20	2.8	20	86	7	78	44	8	12	33	1.73
4802196--4802229	17	2.0	17	88	0	50	11	23	5	58	1.55
4813041--4813087	23	2.0	23	84	8	60	31	17	2	48	1.58
4815015--4815061	21	2.2	22	88	3	69	29	2	27	40	1.68
4815023--4815068	21	2.2	21	84	3	58	32	2	23	41	1.67
4815056--4815094	20	1.9	21	94	5	71	38	0	23	38	1.55
4815057--4815096	9	4.1	9	84	15	53	35	0	22	42	1.54
4818469--4818522	20	2.7	20	78	18	58	35	14	12	37	1.85
4818511--4818546	13	2.8	13	100	0	72	30	13	16	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4818597--4818647	20	2.5	20	83	0	66	37	17	13	31	1.89
4832476--4832514	10	3.8	10	86	3	51	87	5	5	2	0.75
4833599--4834233	61	10.4	62	85	4	819	25	26	19	28	1.98
4833578--4834240	187	3.7	186	87	4	921	26	26	19	28	1.99
4834994--4835024	13	2.4	13	94	0	53	35	12	16	35	1.87
4834974--4835040	33	2.0	33	88	11	102	32	17	13	35	1.89
4835091--4835153	32	1.9	33	93	3	110	41	14	15	28	1.87
4835674--4835742	17	4.1	17	81	1	86	33	31	0	34	1.58
4835680--4835748	34	2.0	34	100	0	138	34	30	0	34	1.58
4836893--4836921	13	2.2	13	100	0	58	41	17	13	27	1.87
4845589--4845894	131	2.3	131	78	8	316	27	24	13	34	1.93
4846919--4847074	44	3.5	45	76	9	176	24	19	12	43	1.86
4847131--4847809	40	16.8	40	74	5	425	18	26	14	40	1.89
4847174--4847748	81	7.1	79	75	6	377	18	26	14	40	1.89
4847174--4847787	121	5.1	119	77	6	484	18	26	14	40	1.89
4847362--4847746	161	2.4	162	81	4	413	18	25	14	41	1.89
4847657--4847809	81	1.9	80	87	4	227	17	28	13	41	1.87
4850334--4850787	152	3.0	150	78	4	498	26	17	17	38	1.92
4857959--4858031	20	3.6	20	81	3	101	35	13	19	31	1.91
4857977--4858052	21	3.7	21	80	3	100	42	11	17	28	1.84
4857959--4858052	41	2.3	41	98	0	179	39	12	18	29	1.88
4858091--4858116	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4862177--4862207	15	2.1	15	93	0	53	48	16	22	12	1.80
4864265--4864289	13	1.9	13	100	0	50	32	20	16	32	1.94
4866082--4866177	34	2.9	34	96	3	178	25	3	25	46	1.67
4866798--4866866	20	3.4	20	80	4	93	34	13	20	31	1.91
4866816--4866891	21	3.7	21	76	3	91	40	13	17	28	1.87
4866798--4866891	41	2.3	41	96	0	170	38	13	18	29	1.89
4866930--4866955	13	2.0	13	100	0	52	38	15	15	30	1.88
4868082--4868119	10	3.8	10	96	0	58	42	5	28	23	1.76
4869760--4869784	13	1.9	13	100	0	50	32	16	16	36	1.90
4872611--4872654	22	2.0	22	95	0	79	20	31	15	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34