genome.fa.s29.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold29
Parameters: 2 7 7 80 10 50 1000
Length:  5511024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   

This is table  4  of  34  ( 4030 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618121--618514	170	2.3	171	95	2	709	36	14	24	24	1.93
618429--618796	49	7.6	49	82	9	454	31	18	25	25	1.97
618428--618796	92	3.9	93	91	5	562	31	18	25	24	1.97
618789--618928	34	4.5	31	85	8	171	14	17	38	29	1.89
618789--618927	31	4.5	32	87	9	175	14	17	38	28	1.89
618930--619184	33	7.7	33	80	12	274	32	12	35	19	1.89
619099--619158	27	2.2	27	87	0	84	28	15	38	18	1.91
619167--619203	19	1.9	19	100	0	74	13	16	48	21	1.80
619132--619238	54	2.0	54	87	7	155	27	13	39	20	1.89
619186--619387	35	5.6	35	84	5	278	33	11	32	22	1.90
619184--619390	72	2.8	73	93	0	371	33	11	32	22	1.89
619367--619509	30	4.6	31	89	4	200	30	16	28	23	1.96
619325--619519	30	6.1	31	83	10	171	35	14	28	21	1.92
627671--627792	52	2.3	53	95	1	219	29	18	18	34	1.94
627671--627812	52	2.7	51	89	5	205	30	17	18	33	1.94
627801--627825	13	1.9	13	100	0	50	36	16	16	32	1.90
627891--627915	13	1.9	13	100	0	50	32	16	16	36	1.90
627974--628015	21	2.0	21	90	0	66	35	14	14	35	1.86
628808--628965	49	3.1	49	76	7	147	35	15	24	24	1.94
628737--629130	170	2.3	171	95	2	709	36	14	24	24	1.93
629045--629412	49	7.6	49	82	9	454	31	18	25	25	1.97
629044--629412	92	3.9	93	91	5	562	31	18	25	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629405--629544	34	4.5	31	85	8	171	14	17	38	29	1.89
629405--629543	31	4.5	32	87	9	175	14	17	38	28	1.89
629546--629800	33	7.7	33	80	12	274	32	12	35	19	1.89
629715--629774	27	2.2	27	87	0	84	28	15	38	18	1.91
629783--629819	19	1.9	19	100	0	74	13	16	48	21	1.80
629748--629854	54	2.0	54	87	7	155	27	13	39	20	1.89
629802--630003	35	5.6	35	84	5	278	33	11	32	22	1.90
629800--630006	72	2.8	73	93	0	371	33	11	32	22	1.89
629983--630125	30	4.6	31	89	4	200	30	16	28	23	1.96
629941--630135	30	6.1	31	83	10	171	35	14	28	21	1.92
638295--638415	52	2.3	52	97	0	224	28	18	18	34	1.94
638295--638435	52	2.7	51	90	4	212	30	17	18	33	1.94
638424--638448	13	1.9	13	100	0	50	36	16	16	32	1.90
638513--638537	13	1.9	13	100	0	50	32	16	16	36	1.90
639353--639747	171	2.3	171	94	3	702	36	14	24	24	1.93
639662--640028	49	7.6	49	81	9	445	31	18	25	24	1.97
639661--640028	92	3.9	93	90	5	560	31	18	25	24	1.97
640021--640160	34	4.5	31	85	8	171	14	17	38	29	1.89
640021--640159	31	4.5	32	87	9	175	14	17	38	28	1.89
640162--640415	33	7.7	32	79	15	252	32	12	35	19	1.90
640330--640389	27	2.2	27	87	0	84	28	15	38	18	1.91
640398--640434	19	1.9	19	100	0	74	13	16	48	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640363--640469	54	2.0	54	87	7	155	27	13	39	20	1.89
640417--640651	35	6.7	36	83	7	297	33	11	31	22	1.90
640415--640620	72	2.9	72	93	0	349	33	11	32	22	1.89
640597--640739	31	4.6	31	87	6	193	31	16	28	23	1.96
640588--640739	60	2.4	63	83	8	195	32	15	28	22	1.95
641662--641694	1	33.0	1	93	0	57	0	3	0	96	0.20
648957--649091	52	2.8	46	84	8	171	31	17	17	33	1.94
649080--649104	13	1.9	13	100	0	50	36	16	16	32	1.90
649170--649194	13	1.9	13	100	0	50	32	16	16	36	1.90
650021--650412	171	2.3	171	92	5	668	36	14	24	24	1.93
650317--650693	49	7.8	49	78	12	397	31	18	25	24	1.97
650326--650693	91	3.9	93	87	10	514	31	18	25	24	1.97
650686--650825	34	4.5	31	85	8	171	14	17	38	29	1.89
650686--650824	31	4.5	32	87	9	175	14	17	38	28	1.89
650827--651081	33	7.7	33	80	12	274	32	12	35	19	1.89
650996--651055	27	2.2	27	87	0	84	28	15	38	18	1.91
651064--651100	19	1.9	19	100	0	74	13	16	48	21	1.80
651029--651134	54	2.0	53	87	9	153	26	13	39	20	1.89
651083--651321	34	6.9	34	82	9	247	34	11	31	22	1.90
651261--651403	31	4.6	31	86	7	184	31	16	28	23	1.96
651261--651403	61	2.3	62	85	4	191	31	16	28	23	1.96
663302--663442	52	2.7	52	91	2	230	31	17	17	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663431--663455	13	1.9	13	100	0	50	36	16	16	32	1.90
663522--663546	13	1.9	13	100	0	50	32	16	16	36	1.90
664432--664589	49	3.1	49	76	7	147	35	15	24	24	1.94
664363--664754	170	2.3	171	94	3	691	36	14	24	24	1.93
664669--665036	49	7.6	49	82	9	454	31	18	25	25	1.97
664668--665036	92	3.9	93	91	5	562	31	18	25	24	1.97
665029--665168	34	4.5	31	85	8	171	14	17	38	29	1.89
665029--665167	31	4.5	32	87	9	175	14	17	38	28	1.89
665170--665424	33	7.7	33	80	12	274	32	12	35	19	1.89
665170--665424	67	3.8	69	82	8	250	32	12	35	19	1.89
665339--665398	27	2.2	27	87	0	84	28	15	38	18	1.91
665407--665443	19	1.9	19	100	0	74	13	16	48	21	1.80
665424--665659	35	6.8	35	83	8	286	33	11	32	22	1.90
665424--665628	72	2.8	73	91	2	353	33	11	33	22	1.89
665605--665747	30	4.6	31	89	4	200	30	16	28	23	1.96
665563--665757	30	6.1	31	83	10	171	35	14	28	21	1.92
671737--671800	29	2.2	29	85	0	83	34	14	29	21	1.93
673938--674078	52	2.7	52	91	2	230	31	17	17	33	1.94
674067--674091	13	1.9	13	100	0	50	36	16	16	32	1.90
674157--674181	13	1.9	13	100	0	50	32	16	16	36	1.90
675075--675232	49	3.1	49	76	7	147	35	15	24	24	1.94
675005--675397	170	2.3	171	94	2	691	36	14	24	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675355--675678	43	6.9	43	77	14	315	30	18	25	25	1.98
675311--675678	91	3.9	93	90	6	553	31	18	25	25	1.97
675312--675678	49	7.6	49	82	8	445	31	18	25	25	1.97
675671--675810	34	4.5	31	85	8	171	14	17	38	29	1.89
675671--675809	31	4.5	32	87	9	175	14	17	38	28	1.89
675812--676065	33	7.7	33	81	11	281	32	12	35	19	1.89
675980--676039	27	2.2	27	87	0	84	28	15	38	18	1.91
676048--676084	19	1.9	19	100	0	74	13	16	48	21	1.80
676067--676301	35	6.7	35	83	8	291	33	11	32	22	1.91
676066--676301	107	2.3	103	83	8	289	33	11	32	22	1.90
676065--676270	72	2.8	73	92	1	344	33	11	33	22	1.89
676247--676398	31	4.9	31	88	4	200	34	15	27	22	1.95
676247--676398	60	2.5	63	83	5	202	34	15	27	22	1.95
676205--676398	31	6.1	31	84	9	178	35	14	28	21	1.93
684552--684692	52	2.7	52	91	2	230	31	17	17	33	1.94
684681--684705	13	1.9	13	100	0	50	36	16	16	32	1.90
684772--684796	13	1.9	13	100	0	50	32	16	16	36	1.90
698241--698718	28	16.5	28	83	7	499	29	30	17	22	1.97
699709--699850	20	6.6	20	74	15	104	29	13	11	45	1.79
699696--699832	70	2.0	70	88	0	202	29	13	11	45	1.79
712507--712578	31	2.3	31	97	0	135	29	16	15	38	1.89
718005--718081	21	3.8	20	74	5	75	35	15	11	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719373--719440	28	2.4	28	77	0	73	32	27	19	20	1.97
719698--719801	13	8.2	13	77	14	74	31	12	16	39	1.86
720472--720510	20	1.9	21	89	5	62	33	10	10	46	1.72
720565--720590	13	2.0	13	100	0	52	30	15	15	38	1.88
720545--720609	33	2.0	33	87	6	96	26	15	16	41	1.88
722693--722735	20	2.1	20	82	4	50	11	27	41	18	1.85
723176--723214	13	3.0	13	92	0	60	35	12	17	33	1.88
729299--729337	20	1.9	21	94	5	71	35	10	10	43	1.73
729372--729397	13	2.0	13	100	0	52	30	15	15	38	1.88
730185--730270	29	3.0	29	87	0	109	30	29	15	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34