genome.fa.s29.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold29
Parameters: 2 7 7 80 10 50 1000
Length:  5511024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   

This is table  7  of  34  ( 4030 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000165--1000346	61	3.1	61	84	7	234	28	19	28	23	1.98
1000178--1000370	55	3.4	55	84	4	215	27	21	24	25	1.99
1000046--1000562	210	2.4	212	87	4	750	27	19	28	24	1.99
1000226--1000501	149	1.8	153	86	7	409	28	20	27	23	1.99
1000385--1000944	61	9.3	61	85	4	666	26	19	27	26	1.99
1000388--1000945	183	3.1	181	85	5	733	27	19	26	26	1.99
1002025--1002089	8	7.9	8	86	11	87	3	1	7	87	0.70
1002034--1002090	1	57.0	1	78	0	60	3	0	7	89	0.58
1005240--1005280	21	2.0	21	85	9	57	41	12	7	39	1.70
1005320--1005390	20	3.6	19	75	7	61	42	16	11	29	1.83
1005385--1005480	45	2.1	47	86	5	133	38	10	22	28	1.87
1006053--1006119	37	1.9	35	88	11	102	32	11	25	29	1.92
1015796--1015991	79	2.5	79	78	12	240	38	12	20	28	1.89
1015891--1016202	130	2.4	128	79	7	317	34	11	24	29	1.90
1016078--1016192	51	2.3	50	88	7	162	29	10	26	33	1.90
1022841--1022910	28	2.5	27	83	4	77	24	18	34	22	1.96
1022765--1022995	108	2.1	108	84	0	293	28	16	28	27	1.97
1022748--1023145	187	2.2	183	84	5	516	31	14	26	27	1.95
1022871--1023070	80	2.5	80	83	1	231	30	14	27	29	1.95
1023029--1023105	27	2.8	27	80	5	84	27	20	28	23	1.99
1023105--1023202	51	1.9	51	84	12	130	36	9	22	31	1.86
1024938--1024966	10	2.7	11	94	5	51	0	0	13	86	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1025478--1025543	34	2.0	33	84	3	87	45	15	15	24	1.84
1025576--1025672	19	5.8	18	68	27	70	37	16	11	35	1.85
1025568--1025670	32	3.2	32	88	0	161	35	17	11	34	1.86
1025727--1025784	21	2.8	21	94	0	98	37	17	10	34	1.84
1030548--1030588	3	13.7	3	94	0	73	29	34	0	36	1.58
1031845--1031911	35	2.0	34	83	13	86	56	14	14	13	1.67
1032251--1032300	20	2.5	20	87	3	66	36	14	18	32	1.90
1035959--1036018	11	5.3	11	74	20	52	73	0	25	1	0.93
1035964--1036018	22	2.5	22	84	3	74	72	0	25	1	0.94
1038328--1038357	13	2.3	13	94	0	51	33	16	10	40	1.82
1040630--1040852	79	2.8	77	81	9	229	28	25	13	32	1.94
1040789--1040904	51	2.2	52	83	5	155	30	27	10	31	1.90
1040892--1040963	28	2.6	28	82	8	85	23	30	18	27	1.97
1041035--1041217	79	2.3	78	82	5	208	28	24	13	32	1.94
1046714--1047292	49	11.8	49	83	5	636	32	17	24	25	1.96
1047155--1047292	43	3.1	43	76	11	132	33	19	23	23	1.97
1047358--1047995	33	19.5	32	76	11	445	34	13	31	20	1.92
1047370--1047995	101	6.4	99	77	8	516	34	13	32	19	1.91
1047593--1047645	27	2.0	27	88	0	79	30	13	32	24	1.93
1047492--1047811	128	2.4	129	92	3	525	33	14	32	19	1.92
1047358--1048000	68	9.8	66	72	14	350	33	13	31	20	1.92
1049451--1049530	33	2.4	32	74	13	81	2	2	16	78	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1049472--1049544	29	2.4	30	71	11	69	2	2	15	79	0.96
1062467--1062586	61	2.0	61	100	0	240	38	17	20	23	1.93
1062478--1062572	28	3.2	28	67	18	84	35	16	24	23	1.95
1063505--1063556	13	3.5	13	73	26	50	34	19	13	32	1.90
1063513--1063597	19	4.7	19	77	19	92	35	17	11	35	1.87
1063505--1063575	32	2.2	32	100	0	142	35	19	12	32	1.90
1073454--1073684	79	2.9	79	87	1	311	31	14	26	27	1.95
1073620--1073836	51	4.2	52	80	5	212	34	11	23	31	1.89
1076138--1076211	20	3.7	19	76	7	67	44	12	13	29	1.80
1076231--1076256	13	2.0	13	100	0	52	38	15	15	30	1.88
1076238--1076290	20	2.7	20	87	0	88	41	15	15	28	1.87
1076845--1076932	1	88.0	1	72	0	68	86	7	3	2	0.76
1076845--1076932	10	8.6	10	81	16	83	86	7	3	2	0.76
1076846--1076919	34	2.2	34	87	4	105	86	9	1	2	0.73
1077426--1077616	55	3.3	55	84	8	224	27	26	19	26	1.99
1077451--1077634	61	3.1	58	80	10	198	26	28	18	26	1.98
1077641--1077825	55	3.4	55	91	1	291	29	25	21	23	1.99
1078073--1078147	20	3.8	19	82	3	78	30	14	12	42	1.82
1080320--1080473	80	1.9	79	82	1	191	28	22	12	37	1.90
1080432--1080505	28	2.7	27	85	8	96	21	32	21	24	1.98
1080489--1080606	51	2.3	51	82	7	141	29	30	12	27	1.93
1080542--1080767	79	2.9	77	76	12	242	26	25	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082124--1082189	35	1.9	34	84	9	89	40	15	24	19	1.90
1082050--1082593	42	13.3	40	71	18	263	40	13	26	19	1.88
1082366--1082431	35	1.9	34	87	3	96	40	18	21	19	1.91
1082094--1082556	244	1.9	244	90	2	743	41	13	25	18	1.88
1082201--1082594	86	4.7	85	74	18	369	39	14	26	20	1.90
1082573--1083334	61	12.4	60	81	6	662	29	18	26	25	1.98
1082574--1083333	122	6.2	121	82	6	852	29	18	26	25	1.98
1082573--1083333	183	4.1	184	81	6	846	29	18	26	25	1.98
1089679--1089909	51	4.5	51	76	8	170	34	11	23	30	1.90
1089513--1089743	79	2.9	79	86	3	304	31	14	26	27	1.95
1089711--1089899	103	1.8	104	82	5	249	34	12	22	30	1.91
1092226--1092256	13	2.4	13	88	0	53	38	12	19	29	1.89
1092187--1092274	20	4.8	19	73	21	71	44	12	15	27	1.83
1092849--1092919	9	7.9	9	80	12	83	84	9	1	4	0.81
1092851--1092915	26	2.5	26	85	9	89	83	10	1	4	0.87
1092868--1092950	32	2.6	32	78	17	93	81	9	4	3	0.94
1092870--1092933	33	2.0	32	85	14	87	81	12	3	3	0.93
1092849--1092923	10	7.1	10	74	16	71	84	10	1	4	0.82
1092849--1092936	17	5.2	17	75	16	69	82	11	2	3	0.87
1093917--1094692	55	13.3	55	72	14	355	26	26	19	26	1.99
1094051--1094177	61	2.1	62	81	10	145	25	28	17	29	1.97
1094112--1094332	94	2.4	94	98	0	424	25	30	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1094276--1094694	110	3.6	111	79	8	412	27	25	20	27	1.99
1094275--1094692	55	7.3	60	81	7	366	26	25	20	27	1.99
1094467--1094692	61	3.7	62	79	8	241	25	24	19	29	1.99
1094705--1094870	42	3.9	42	85	8	194	18	27	13	40	1.89
1094705--1094870	87	1.9	84	83	9	210	18	27	13	40	1.89
1095570--1095622	20	2.7	20	90	0	88	30	15	13	41	1.85
1095608--1095650	13	3.3	13	90	0	68	34	16	11	37	1.85
1098001--1098295	78	3.8	77	82	5	349	27	25	12	34	1.92
1098393--1098510	51	2.3	51	83	0	137	29	27	13	28	1.94
1098444--1098661	79	2.8	78	77	12	237	27	23	15	33	1.95
1107077--1107167	39	2.3	39	79	11	105	32	21	6	38	1.80
1109002--1109039	13	2.9	13	96	0	67	31	15	18	34	1.92
1111110--1111140	15	2.1	15	93	0	53	12	22	16	48	1.80
1114254--1114391	52	2.7	52	89	0	213	31	16	17	34	1.92
1114380--1114438	13	4.9	13	73	26	67	35	13	18	32	1.90
1114380--1114459	34	2.4	34	100	0	160	35	12	20	32	1.90
1114503--1114527	13	1.9	13	100	0	50	32	16	16	36	1.90
1114481--1114547	33	2.0	33	88	0	98	40	13	11	34	1.81
1118826--1118851	13	2.0	13	100	0	52	30	15	15	38	1.88
1118806--1118869	32	2.0	33	90	9	105	29	15	15	39	1.89
1119309--1119335	13	2.1	13	100	0	54	29	14	14	40	1.86
1124169--1124235	37	1.9	35	85	11	93	29	23	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1124693--1124718	13	2.0	13	100	0	52	30	15	15	38	1.88
1124673--1124736	32	2.0	33	90	3	103	28	14	15	42	1.86
1125342--1125422	39	2.1	39	84	11	103	34	25	4	34	1.78
1126825--1126871	23	2.0	24	84	12	62	61	19	4	14	1.49
1127750--1127914	84	2.0	84	82	7	201	24	19	3	52	1.62
1129967--1129992	13	2.0	13	100	0	52	30	15	15	38	1.88
1129947--1130010	32	2.0	33	90	3	103	28	14	15	42	1.86
1133586--1133652	33	2.0	33	85	5	91	26	31	14	26	1.95
1133941--1134002	17	3.5	17	70	12	61	37	1	11	50	1.48
1133939--1134023	37	2.3	37	93	4	145	37	2	15	44	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34