genome.fa.s29.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold29
Parameters: 2 7 7 80 10 50 1000
Length:  5511024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   

This is table  34  of  34  ( 4030 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5390387--5390488	35	2.9	36	78	10	120	35	11	18	34	1.87
5390373--5390536	71	2.3	71	78	8	181	35	12	20	31	1.90
5390157--5390536	36	10.9	34	72	12	175	35	12	18	33	1.89
5391695--5392322	153	4.1	153	82	7	738	33	7	8	50	1.61
5391695--5392322	306	2.0	307	84	5	833	33	7	8	50	1.61
5392492--5392548	16	3.5	17	90	7	91	33	0	1	64	1.04
5397823--5397876	20	2.7	20	91	5	83	31	12	18	37	1.89
5404049--5404075	13	2.1	13	100	0	54	29	14	14	40	1.86
5406497--5406523	13	2.1	13	100	0	54	29	14	14	40	1.86
5406569--5406601	13	2.5	13	95	0	57	30	12	15	42	1.83
5412272--5412425	69	2.4	62	80	14	218	29	16	11	41	1.84
5412280--5412416	69	2.0	69	95	0	247	29	15	11	43	1.82
5417068--5417297	117	2.0	118	88	2	340	27	14	13	45	1.81
5417180--5417731	165	3.4	165	87	5	777	29	12	9	48	1.71
5417180--5417804	157	3.9	156	83	9	690	30	12	9	48	1.72
5421723--5422023	155	1.9	155	82	6	376	36	18	18	25	1.94
5421912--5422133	117	1.9	116	83	4	286	37	18	17	26	1.92
5427904--5427968	33	2.0	33	87	0	94	35	12	12	40	1.80
5428009--5428033	13	1.9	13	100	0	50	32	16	16	36	1.90
5428022--5428170	52	2.9	51	91	4	244	32	19	17	30	1.95
5441990--5442056	1	67.0	1	78	0	71	89	10	0	0	0.48
5441992--5442056	10	6.7	10	85	7	98	89	10	0	0	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5441992--5442056	14	4.5	14	86	5	85	89	10	0	0	0.49
5441988--5442056	25	3.0	22	83	12	93	88	11	0	0	0.52
5441992--5442056	19	3.4	19	89	8	96	89	10	0	0	0.49
5441988--5442053	32	2.0	33	88	8	100	87	12	0	0	0.53
5443493--5443584	30	3.1	30	77	3	87	25	31	15	28	1.95
5443560--5443634	35	2.2	34	82	2	96	22	32	9	36	1.86
5443570--5443682	30	3.4	34	77	11	101	22	26	14	37	1.92
5443625--5443807	28	6.3	29	87	5	214	34	27	16	21	1.95
5443829--5444018	52	3.9	50	79	12	232	23	26	19	30	1.98
5443830--5444017	95	2.0	95	90	4	299	23	27	19	29	1.98
5444909--5444933	13	1.9	13	100	0	50	32	16	16	36	1.90
5448931--5449062	48	2.8	48	79	0	147	21	19	18	40	1.92
5449115--5450455	44	30.7	43	69	12	624	19	23	16	40	1.91
5449083--5450455	88	15.7	88	79	5	1250	19	23	16	40	1.91
5450836--5450903	34	2.0	33	85	2	91	33	16	10	39	1.82
5455207--5455231	13	1.9	13	100	0	50	32	20	16	32	1.94
5457930--5458255	168	1.9	167	85	5	444	41	22	14	21	1.89
5465946--5466061	51	2.3	51	98	0	223	27	15	18	37	1.92
5465946--5466074	51	2.5	51	93	2	197	27	16	20	36	1.93
5466195--5466309	31	3.7	31	82	2	133	17	24	28	29	1.97
5466097--5466428	179	1.9	178	83	5	436	23	21	22	32	1.98
5466228--5466653	149	2.9	148	84	3	543	24	21	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5466697--5466916	120	1.8	120	83	1	289	45	14	23	16	1.84
5466695--5467117	42	10.3	42	73	11	234	43	14	22	19	1.86
5474587--5474638	20	2.5	20	84	3	68	32	13	11	42	1.80
5479397--5479644	73	3.6	71	75	14	239	24	18	13	42	1.87
5479397--5479644	139	1.8	134	84	6	336	24	18	13	42	1.87
5479432--5479743	73	4.6	67	71	14	201	25	19	14	40	1.89
5479591--5479970	72	5.4	70	75	9	267	26	20	15	37	1.92
5480523--5480576	21	2.5	22	76	8	67	44	11	14	29	1.80
5481861--5481920	25	2.4	25	97	0	111	20	21	6	51	1.70
5483173--5483233	28	2.2	28	90	0	104	26	34	11	27	1.91
5483190--5483363	79	2.2	79	81	8	201	30	27	9	32	1.88
5483295--5483415	53	2.3	53	81	11	142	27	24	9	38	1.87
5483218--5483460	133	1.8	131	85	1	342	30	26	9	34	1.88
5483349--5483504	81	1.9	82	85	2	217	28	25	10	35	1.89
5483351--5483552	81	2.5	81	78	6	205	29	23	8	38	1.84
5485472--5485701	98	2.4	97	82	3	257	37	14	20	26	1.92
5490548--5490751	96	2.1	96	88	2	302	36	9	22	31	1.86
5493053--5493191	52	2.7	52	86	4	165	42	13	14	29	1.84
5493583--5493762	93	1.9	92	85	1	243	38	13	15	32	1.86
5493587--5493786	93	2.2	92	81	1	222	40	14	13	32	1.84
5496356--5496381	13	2.0	13	100	0	52	38	15	15	30	1.88
5498599--5498643	21	2.1	21	84	8	56	53	4	20	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5502331--5502362	8	4.0	8	100	0	64	12	0	25	62	1.30
5502564--5502602	13	3.0	13	100	0	78	30	15	15	38	1.88
5505155--5505180	13	2.0	13	100	0	52	38	15	15	30	1.88
5507518--5507674	59	2.7	59	80	7	176	45	13	16	24	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34

The End!