genome.fa.s407.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Length:  4418299

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  14  of  28  ( 3302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1970879--1970945	37	1.9	35	88	11	102	29	25	11	32	1.92
1971404--1971429	13	2.0	13	100	0	52	30	15	15	38	1.88
1973844--1973890	23	2.0	24	84	12	62	61	19	4	14	1.49
1976461--1976527	37	1.9	35	88	11	102	29	25	11	32	1.92
1976986--1977011	13	2.0	13	100	0	52	30	15	15	38	1.88
1977424--1977449	13	2.0	13	100	0	52	30	15	15	38	1.88
1980035--1980069	13	2.7	13	90	0	52	37	14	17	31	1.89
1986151--1986176	13	2.0	13	100	0	52	30	15	15	38	1.88
1986226--1986299	20	3.7	20	82	8	78	29	17	13	39	1.88
1988699--1988737	13	3.0	13	96	0	69	35	15	17	30	1.91
1990801--1990841	15	2.7	15	84	3	55	17	19	17	46	1.85
2001787--2001915	52	2.5	52	97	0	240	28	18	17	34	1.94
2002010--2002034	13	1.9	13	100	0	50	32	16	16	36	1.90
2001989--2002054	32	2.0	33	94	2	116	36	15	12	36	1.84
2002205--2002333	52	2.5	52	93	0	222	27	17	18	36	1.94
2002342--2002366	13	1.9	13	100	0	50	36	16	16	32	1.90
2002409--2002493	19	4.7	19	79	18	92	37	18	11	31	1.87
2002428--2002452	13	1.9	13	100	0	50	32	16	16	36	1.90
2002407--2002471	32	2.0	32	96	0	121	36	16	12	33	1.87
2008673--2008708	2	18.0	2	100	0	72	50	0	0	50	1.00
2008986--2009019	2	17.5	2	93	6	61	50	0	0	50	1.00
2015451--2015485	16	2.3	15	90	5	52	20	11	14	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2015546--2015751	35	5.9	34	65	17	109	41	1	2	54	1.22
2015538--2015797	141	1.8	140	83	9	341	40	1	1	55	1.22
2015671--2015703	10	3.3	10	91	8	50	33	0	6	60	1.21
2015787--2015820	12	3.0	12	91	8	54	38	0	0	61	0.96
2015546--2015858	145	2.2	140	80	11	336	38	1	2	57	1.21
2016042--2016102	29	2.1	30	82	11	74	49	0	1	49	1.10
2016686--2016726	20	2.0	20	100	0	82	21	9	29	39	1.86
2016988--2017029	17	2.5	17	80	3	50	59	0	0	40	0.97
2017057--2017107	21	2.4	22	81	18	63	54	0	0	45	0.99
2017074--2017122	17	2.9	18	75	22	52	55	0	0	44	0.99
2018676--2018990	158	2.0	159	91	3	510	46	6	9	36	1.64
2019856--2019894	20	1.9	20	84	5	51	43	5	0	51	1.24
2020444--2020493	23	2.2	23	100	0	100	20	4	24	52	1.63
2020853--2020878	13	2.0	13	100	0	52	38	15	15	30	1.88
2022998--2023069	28	2.6	28	86	0	90	25	19	33	22	1.97
2023058--2023707	52	12.3	52	70	13	305	32	12	25	29	1.92
2023059--2023540	104	4.6	104	73	11	401	32	12	26	29	1.92
2023210--2023285	27	2.8	28	89	2	109	21	21	34	23	1.97
2022993--2023401	212	1.9	211	87	3	599	32	13	26	28	1.93
2023517--2023601	27	3.1	27	86	8	111	25	20	30	23	1.98
2023058--2023710	316	2.1	316	98	0	1261	32	12	25	29	1.92
2026075--2026100	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2026054--2026120	33	2.0	33	88	0	98	43	16	14	25	1.86
2026140--2026207	19	3.9	18	73	23	74	38	13	11	36	1.81
2026143--2026205	32	2.0	32	93	0	108	36	14	12	36	1.84
2028175--2028211	3	12.3	3	88	0	56	40	0	29	29	1.57
2032766--2032804	13	3.0	13	100	0	78	30	15	15	38	1.88
2032913--2032962	21	2.4	22	83	9	61	32	20	0	48	1.50
2035268--2035294	13	2.1	13	100	0	54	29	14	14	40	1.86
2035280--2035354	20	3.8	20	87	5	100	34	13	16	36	1.87
2035831--2035886	19	2.8	21	86	8	80	33	14	17	33	1.90
2040604--2040642	22	1.9	20	85	15	53	35	10	5	48	1.59
2040745--2040794	19	2.5	20	87	9	68	28	16	18	38	1.91
2042831--2042886	21	2.7	21	88	0	85	39	7	14	39	1.73
2042959--2042996	15	2.5	15	86	0	58	52	2	13	31	1.54
2047134--2047160	13	2.1	13	100	0	54	29	14	14	40	1.86
2047146--2047198	19	2.7	20	85	8	72	33	15	16	33	1.90
2047246--2047276	13	2.4	13	94	0	53	35	16	12	35	1.87
2050038--2050065	14	2.0	14	100	0	56	28	7	14	50	1.69
2053468--2053506	13	3.0	13	84	0	60	38	15	10	35	1.81
2055348--2055385	18	2.1	19	95	5	69	55	0	34	10	1.34
2056000--2056026	13	2.1	13	100	0	54	29	14	14	40	1.86
2056012--2056064	19	2.7	20	85	8	72	33	15	16	33	1.90
2056097--2056151	20	2.7	21	86	8	78	41	12	16	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2062743--2062791	22	2.2	22	85	7	64	38	0	22	38	1.54
2062743--2062789	21	2.2	23	85	11	64	38	0	23	38	1.55
2063804--2063860	19	2.9	19	76	2	60	33	15	17	33	1.92
2063892--2063954	33	1.9	32	87	12	92	36	15	15	31	1.90
2071863--2071919	19	2.9	19	81	2	69	31	15	17	35	1.92
2073146--2073210	32	2.0	34	87	6	98	30	13	13	41	1.84
2073241--2073314	20	3.7	20	82	8	78	29	17	13	39	1.88
2075266--2075308	20	2.1	20	82	4	50	9	27	44	18	1.80
2075751--2075787	13	2.8	13	95	0	65	37	16	16	29	1.90
2077867--2077897	15	2.1	15	93	0	53	12	22	16	48	1.80
2081944--2081969	13	2.0	13	100	0	52	30	15	15	38	1.88
2081923--2081987	32	2.0	34	87	6	98	27	13	16	41	1.87
2086093--2086249	20	7.8	20	69	23	89	26	15	15	42	1.87
2086160--2086229	33	2.1	33	91	0	113	25	15	14	44	1.84
2086182--2086210	13	2.2	13	100	0	58	27	6	17	48	1.72
2088637--2089441	79	10.3	79	83	2	953	26	23	14	34	1.94
2088637--2089441	233	3.4	232	86	4	1057	26	23	14	34	1.94
2088637--2089390	312	2.4	310	86	3	1041	27	23	14	35	1.93
2100667--2100705	2	19.5	2	100	0	78	51	0	0	48	1.00
2103554--2103578	13	1.9	13	100	0	50	48	0	32	20	1.50
2104270--2104309	3	13.3	3	94	0	71	32	2	0	65	1.06
2115591--2115646	6	9.0	6	81	16	53	82	0	17	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2115593--2115639	11	4.4	10	84	12	58	85	0	14	0	0.61
2115591--2115647	22	2.5	22	83	13	80	82	0	17	0	0.67
2115598--2115651	8	6.9	8	79	8	58	83	0	16	0	0.65
2115594--2115651	29	2.0	28	83	9	73	82	0	17	0	0.66
2115598--2115652	9	5.8	10	75	25	57	81	0	18	0	0.68
2116567--2116615	18	2.7	18	81	6	55	46	12	10	30	1.74
2117222--2117254	16	2.1	16	94	0	57	24	3	30	42	1.70
2121510--2121548	18	2.1	18	85	9	51	46	7	7	38	1.61
2122321--2122346	5	5.2	5	100	0	52	61	19	0	19	1.35
2123390--2123427	2	19.0	2	100	0	76	50	0	0	50	1.00
2124085--2124122	3	12.7	3	94	0	67	63	0	2	34	1.09
2124440--2124485	19	2.4	19	89	7	67	6	19	2	71	1.18
2124925--2124980	21	2.8	21	84	12	66	37	0	0	62	0.95
2124925--2125001	40	1.9	41	82	12	97	38	0	1	59	1.06
2125972--2126023	18	3.0	18	83	10	56	57	0	0	42	0.98
2126462--2126508	24	2.0	24	91	8	78	61	2	0	36	1.08
2126849--2126922	37	2.0	36	84	7	96	54	0	0	45	1.00
2126937--2126984	23	2.1	22	85	11	62	64	0	0	35	0.94
2127077--2127116	20	1.9	20	85	10	53	40	0	0	60	0.97
2132207--2132285	18	4.1	18	70	29	65	43	1	0	55	1.07
2132153--2132303	77	2.0	76	79	8	164	42	1	0	55	1.11
2132794--2132832	20	2.0	20	90	5	62	53	2	2	41	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2133187--2133252	22	3.0	22	73	8	62	48	1	0	50	1.10
2133174--2133224	26	2.0	26	88	7	77	52	1	0	45	1.12
2135623--2135947	167	2.0	164	83	7	415	25	10	10	53	1.67
2135657--2136038	167	2.3	166	79	8	407	26	12	10	51	1.71
2136631--2136696	12	5.5	12	77	18	59	74	1	18	6	1.10
2136631--2136690	15	3.9	15	76	20	52	75	0	18	6	1.02
2137756--2138043	150	1.9	149	84	9	390	35	11	13	39	1.81
2137796--2138682	443	2.0	442	95	0	1614	36	12	13	37	1.83
2138960--2139645	154	4.4	155	79	4	697	23	17	21	37	1.94
2138960--2139653	310	2.2	309	81	4	853	23	17	21	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28