genome.fa.s407.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Length:  4418299

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  7  of  28  ( 3302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972855--973240	52	7.4	52	71	11	200	29	25	12	32	1.93
972961--973036	27	2.8	27	88	9	102	22	34	22	21	1.97
973228--973299	28	2.6	28	86	0	90	22	33	19	25	1.97
973253--973455	78	2.6	78	84	1	246	24	30	16	28	1.97
982407--982461	21	2.6	21	94	0	101	36	16	10	36	1.84
982467--982491	13	1.9	13	100	0	50	36	16	16	32	1.90
983109--983140	16	2.0	16	100	0	64	12	37	6	43	1.68
984483--984507	13	1.9	13	100	0	50	36	16	16	32	1.90
984460--984527	33	2.1	32	86	2	91	33	14	16	35	1.89
984559--984611	20	2.6	21	84	3	72	28	16	15	39	1.89
984599--984623	13	1.9	13	100	0	50	36	16	16	32	1.90
987074--987112	13	3.0	13	92	0	69	33	15	20	30	1.94
987314--987339	8	3.2	8	100	0	52	61	23	0	15	1.33
991218--991260	16	2.7	16	100	0	86	34	11	0	53	1.37
993296--993363	33	2.1	32	86	2	91	32	16	17	33	1.92
993395--993447	20	2.6	21	84	3	72	28	16	15	39	1.89
995984--996051	19	3.9	18	73	23	74	35	10	16	38	1.82
995986--996048	32	2.0	32	93	0	108	34	11	17	36	1.85
996091--996116	13	2.0	13	100	0	52	30	15	15	38	1.88
996071--996137	34	2.0	33	91	2	107	25	16	13	44	1.84
998477--998718	132	1.8	132	86	1	351	30	25	11	31	1.92
1001365--1001403	13	3.0	13	92	0	69	35	17	15	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1001542--1001678	53	2.6	53	90	3	204	27	16	18	37	1.92
1001666--1001713	20	2.4	20	79	6	53	29	14	16	39	1.88
1002347--1002379	4	8.2	4	100	0	66	24	0	0	75	0.80
1012703--1012778	1	76.0	1	72	0	53	85	9	5	0	0.73
1012714--1012778	14	4.5	15	82	5	73	86	9	4	0	0.71
1012714--1012778	8	8.0	8	82	16	71	86	9	4	0	0.71
1012704--1012778	9	8.6	9	77	12	59	85	9	5	0	0.74
1013744--1014293	59	9.3	59	92	3	824	25	27	20	26	1.99
1015128--1015195	19	3.9	18	76	23	83	35	11	16	36	1.85
1015149--1015173	13	1.9	13	100	0	50	36	16	16	32	1.90
1015130--1015192	32	2.0	32	96	0	117	34	12	17	34	1.88
1015235--1015260	13	2.0	13	100	0	52	30	15	15	38	1.88
1015215--1015280	34	2.0	33	90	3	105	25	16	13	43	1.85
1024404--1024465	13	3.5	19	71	26	64	30	12	17	38	1.88
1024399--1024466	33	2.1	33	91	2	111	32	13	16	38	1.87
1024547--1024571	13	1.9	13	100	0	50	36	16	16	32	1.90
1031880--1031922	18	2.3	18	84	8	50	72	4	0	23	1.04
1032711--1032795	36	2.4	35	81	15	104	52	0	0	47	1.00
1033107--1033157	18	2.7	19	74	20	52	41	7	0	50	1.31
1033789--1033832	17	2.7	17	82	10	56	70	0	0	29	0.88
1038458--1038488	16	1.9	16	100	0	62	3	0	12	83	0.75
1039841--1039890	24	2.1	24	82	14	59	50	4	8	38	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042194--1042233	2	20.0	2	100	0	80	50	0	0	50	1.00
1043633--1043676	15	2.9	15	80	10	54	18	6	25	50	1.71
1043934--1043991	20	2.9	21	77	12	59	44	1	1	51	1.21
1043921--1043969	19	2.4	20	80	13	55	38	2	2	57	1.22
1044305--1044356	16	3.3	16	81	2	52	34	0	1	63	1.06
1044305--1044360	14	4.1	15	72	25	52	35	0	1	62	1.06
1044707--1044759	23	2.4	23	84	12	67	60	0	0	39	0.97
1045460--1045592	70	1.9	70	83	8	175	51	1	1	45	1.19
1045674--1045749	35	2.3	33	82	11	84	52	0	2	44	1.14
1045513--1045796	118	2.5	114	84	9	357	53	2	2	41	1.24
1045769--1045844	23	3.4	22	76	8	73	60	6	2	30	1.36
1045607--1045810	114	1.8	111	87	5	302	52	2	2	42	1.27
1046080--1046437	122	2.9	124	87	7	482	41	3	1	52	1.28
1046888--1047694	91	8.9	91	85	3	1067	42	7	16	33	1.76
1047624--1047763	70	2.0	69	84	6	185	42	8	19	30	1.81
1047534--1047848	161	2.0	160	84	4	411	40	7	18	33	1.78
1047698--1047866	91	1.9	91	82	2	214	39	5	19	34	1.76
1051213--1051864	297	2.2	293	90	3	1033	46	8	9	36	1.65
1052018--1052055	19	2.1	18	90	5	58	39	0	0	60	0.97
1052022--1052061	19	2.1	19	85	0	53	45	0	0	55	0.99
1052075--1052221	70	2.2	66	79	9	161	42	0	1	55	1.08
1052086--1052216	70	1.9	67	84	4	172	44	0	1	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052344--1052384	12	2.9	14	79	20	50	56	0	0	43	0.99
1052661--1052704	16	2.8	16	85	0	61	43	0	0	56	0.99
1053130--1053173	23	2.0	23	86	4	63	38	0	0	61	0.96
1053130--1053185	22	2.5	24	77	16	66	42	0	0	57	0.99
1053125--1053216	19	4.6	20	73	20	77	41	0	0	58	0.98
1053151--1053198	17	2.9	16	87	6	69	41	0	0	58	0.98
1053173--1053231	21	2.8	20	87	10	73	44	0	0	55	0.99
1055363--1055413	19	2.8	18	79	8	59	43	3	0	52	1.19
1055685--1055764	39	2.0	40	83	9	101	53	0	0	46	1.00
1056007--1056049	19	2.3	19	87	0	59	55	2	0	41	1.12
1057300--1057324	13	1.9	13	100	0	50	64	0	0	36	0.94
1057480--1057516	18	2.1	17	90	5	56	45	5	0	48	1.25
1058280--1058322	22	2.1	19	87	12	59	44	0	0	55	0.99
1059281--1059326	17	2.8	17	75	15	51	65	0	0	34	0.93
1059625--1059671	11	4.0	11	79	15	58	65	0	0	34	0.93
1059607--1059669	25	2.5	25	87	7	83	63	1	0	34	1.04
1059607--1059699	25	3.6	25	81	7	80	58	2	0	39	1.10
1059676--1059725	18	2.7	19	72	27	54	52	4	0	44	1.20
1059758--1059787	14	2.1	14	93	0	51	76	0	0	23	0.78
1060402--1060472	10	7.0	10	71	12	56	56	0	1	42	1.08
1060402--1060479	22	3.8	21	72	16	56	53	0	1	44	1.08
1064009--1064145	46	3.0	45	74	12	134	51	4	5	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1066673--1066815	53	2.8	53	88	7	210	49	5	6	38	1.52
1072146--1072408	79	3.3	79	83	5	259	28	22	11	36	1.90
1072448--1072545	52	1.9	52	85	6	137	32	24	6	36	1.80
1072146--1072512	79	4.6	79	76	6	253	29	24	11	34	1.90
1074130--1074183	20	2.7	20	91	5	83	37	18	12	31	1.89
1080198--1080224	13	2.1	13	100	0	54	40	14	14	29	1.86
1081885--1081935	19	2.7	19	100	0	102	31	11	19	37	1.88
1081988--1082012	13	1.9	13	100	0	50	32	16	16	36	1.90
1082021--1082149	52	2.5	52	90	0	213	34	17	18	29	1.94
1084265--1084318	27	2.1	26	86	10	76	24	38	16	20	1.92
1089059--1089108	21	2.2	21	86	10	64	80	12	6	2	0.98
1090390--1090546	31	5.1	31	83	9	214	26	26	15	31	1.96
1090390--1090556	61	2.7	61	88	5	250	26	28	14	30	1.95
1090540--1090892	34	10.4	34	87	0	490	20	33	10	34	1.88
1090543--1090892	68	5.1	68	92	0	574	21	33	10	34	1.88
1090882--1091012	33	4.0	33	89	0	199	29	30	18	21	1.97
1091012--1091828	49	16.9	49	80	8	831	25	25	17	31	1.97
1091007--1091775	92	8.1	92	88	4	930	24	26	17	31	1.97
1091012--1091866	92	8.8	100	87	5	843	25	25	16	32	1.96
1091012--1091866	150	5.9	148	82	8	886	25	25	16	32	1.96
1098507--1098560	20	2.7	20	91	5	83	37	18	12	31	1.89
1098589--1098644	19	2.9	19	91	2	85	35	17	16	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1098629--1098655	13	2.1	13	100	0	54	40	14	14	29	1.86
1100263--1100301	4	9.8	4	94	0	69	25	2	0	71	0.98
1101384--1101439	21	2.6	22	94	5	105	37	10	25	26	1.88
1101427--1101457	10	3.1	10	90	0	53	41	6	29	22	1.78
1101481--1101517	19	2.0	19	89	5	58	27	8	16	48	1.74
1101481--1101617	53	2.6	53	92	1	229	26	16	18	38	1.92
1101605--1101659	21	2.7	20	80	5	65	30	14	16	38	1.89
1101698--1101738	21	2.0	21	85	9	57	39	9	12	39	1.76
1103861--1103917	27	2.1	27	93	6	98	10	28	10	50	1.69
1107912--1107977	35	1.9	35	90	3	107	27	3	3	66	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28