genome.fa.s407.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Length:  4418299

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  28  of  28  ( 3302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4348594--4348655	21	2.7	24	75	9	67	67	0	3	29	1.06
4348603--4348664	21	3.1	19	79	9	61	67	0	1	30	1.00
4348594--4348667	21	3.5	22	71	14	57	67	0	2	29	1.04
4348603--4348665	20	3.1	20	77	11	65	68	0	1	30	0.99
4348810--4348860	18	3.3	15	77	17	59	43	0	0	56	0.99
4348814--4348875	15	3.6	18	72	26	53	48	0	0	51	1.00
4348807--4348895	31	2.8	31	78	10	83	44	1	0	53	1.07
4348807--4348901	32	3.0	31	79	10	95	43	1	0	55	1.06
4349953--4350003	21	2.4	22	80	6	59	25	3	11	58	1.50
4349931--4350087	75	2.1	75	89	2	235	26	7	13	52	1.65
4352264--4352320	23	2.5	23	76	18	57	28	24	0	47	1.52
4363536--4363612	20	3.8	20	76	6	84	40	12	12	33	1.82
4364442--4365241	28	27.9	28	85	3	954	22	18	31	28	1.97
4364439--4365241	57	14.0	56	86	4	966	22	17	30	28	1.97
4364442--4365241	85	9.3	84	86	4	1001	22	18	31	28	1.97
4371270--4371331	32	1.9	33	87	9	92	30	14	14	40	1.86
4371404--4371428	13	1.9	13	100	0	50	36	16	16	32	1.90
4371386--4371451	33	2.0	33	93	0	114	36	18	16	28	1.93
4372022--4372056	17	2.1	17	100	0	70	40	11	8	40	1.72
4371987--4372149	75	2.2	75	96	0	299	33	25	4	36	1.76
4372098--4372130	17	1.9	17	100	0	66	45	12	0	42	1.41
4373984--4374021	13	3.0	12	88	11	58	31	15	18	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4380205--4380230	13	2.0	13	100	0	52	30	15	15	38	1.88
4380185--4380248	33	2.0	32	87	9	94	28	14	17	40	1.88
4380319--4380399	13	7.2	12	67	25	61	34	17	17	30	1.93
4380303--4380401	33	3.0	33	95	0	171	35	17	17	30	1.93
4380334--4380398	20	3.6	20	69	26	72	32	16	18	32	1.94
4385534--4385595	19	3.2	19	71	13	54	43	14	14	27	1.84
4385562--4385634	32	2.3	32	95	0	128	35	12	16	35	1.86
4385564--4385626	19	3.7	18	72	24	64	34	12	15	36	1.86
4385658--4385683	13	2.0	13	100	0	52	30	15	15	38	1.88
4386011--4386191	27	6.1	27	72	21	123	44	7	31	17	1.75
4386038--4386165	35	3.9	34	79	19	164	42	6	32	17	1.75
4386073--4386191	26	4.2	26	76	21	121	43	7	31	16	1.76
4386009--4386198	62	3.1	62	90	6	305	43	6	31	17	1.76
4387422--4387602	28	6.6	28	74	20	159	23	30	18	27	1.98
4387409--4387681	107	2.6	107	96	0	492	24	29	17	28	1.97
4387557--4387969	79	5.2	79	94	0	718	26	27	15	30	1.96
4387901--4388035	51	2.6	51	83	6	175	27	23	13	35	1.92
4389560--4389618	24	2.5	24	94	0	100	49	37	8	5	1.55
4391340--4391469	52	2.5	52	86	8	176	29	23	10	36	1.89
4391453--4391527	27	2.7	27	89	6	107	24	33	21	21	1.97
4391480--4391798	79	4.0	78	81	7	363	26	26	14	32	1.94
4405282--4405475	54	3.5	53	79	11	228	26	26	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4405305--4405475	58	3.0	58	80	14	219	26	27	21	25	1.99
4405334--4405624	152	1.9	149	85	7	401	25	28	20	24	1.99
4405486--4405735	55	4.5	55	87	6	335	26	28	21	24	1.99
4405718--4405838	42	2.9	43	77	14	144	19	26	13	40	1.88
4406540--4406602	19	3.7	18	76	24	73	33	12	17	36	1.88
4406559--4406583	13	1.9	13	100	0	50	36	16	16	32	1.90
4406538--4406610	32	2.3	32	97	0	137	34	12	17	35	1.88
4406634--4406659	13	2.0	13	100	0	52	30	15	15	38	1.88
4409007--4409138	53	2.5	51	84	11	169	30	23	10	35	1.89
4409111--4409330	80	2.7	79	84	8	275	25	27	15	31	1.95
4409072--4409347	81	3.4	81	79	9	314	27	26	13	31	1.94
4409072--4409361	161	1.8	160	85	8	410	28	25	13	32	1.93
4411326--4411414	1	89.0	1	75	0	70	3	1	8	86	0.73
4411320--4411415	21	4.6	22	77	19	82	3	2	10	84	0.82
4411349--4411414	15	4.4	15	84	5	89	3	0	7	89	0.58
4416809--4416890	28	2.9	28	80	7	96	26	17	31	24	1.97
4416873--4417043	51	3.3	51	79	4	198	32	11	26	29	1.92
4417026--4417101	27	2.8	28	88	6	102	21	21	34	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28

The End!