genome.fa.s407.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Length:  4418299

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  2  of  28  ( 3302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111479--111544	34	1.9	33	82	11	80	50	0	0	50	1.00
111667--111719	22	2.4	22	100	0	106	52	0	0	47	1.00
112121--112155	2	17.5	2	100	0	70	0	48	0	51	1.00
115542--115597	28	2.0	28	100	0	112	21	17	17	42	1.89
116647--116690	17	2.4	18	88	7	63	65	0	0	34	0.93
116657--116729	25	2.9	25	75	2	74	61	2	1	34	1.19
120006--120036	2	15.5	2	93	0	53	48	3	0	48	1.17
120140--120176	15	2.5	15	90	0	56	48	5	5	40	1.49
122739--122808	26	2.6	29	77	13	76	38	0	1	60	1.06
123751--123810	23	2.6	23	77	17	70	58	0	0	41	0.98
123767--123805	14	2.9	14	84	3	53	61	0	0	38	0.96
123867--123904	19	2.0	19	85	10	51	39	0	0	60	0.97
126502--126555	18	3.2	18	68	21	53	53	0	0	46	1.00
126495--126569	33	2.4	32	86	6	100	53	0	0	46	1.00
126562--126611	13	4.0	12	81	2	55	56	2	0	42	1.11
126513--126611	12	7.3	13	70	21	62	57	1	0	41	1.05
127024--127096	27	2.6	28	78	12	78	56	0	0	43	0.99
127529--127560	11	3.1	11	86	13	50	56	0	0	43	0.99
127565--127609	12	3.3	15	73	20	53	40	0	0	60	0.97
131389--131463	19	3.9	19	77	11	64	48	2	0	49	1.15
131398--131463	13	5.2	13	72	18	59	46	1	0	51	1.10
131395--131467	30	2.4	31	84	6	96	49	1	0	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131389--131471	39	2.1	39	82	8	98	49	2	0	48	1.14
131429--131475	19	2.3	20	78	14	51	53	0	0	46	1.00
131550--131585	2	18.0	2	100	0	72	50	0	0	50	1.00
132663--132693	3	10.3	3	100	0	62	67	0	0	32	0.91
135805--135879	30	2.7	27	74	23	75	52	0	0	48	1.00
135852--135890	20	2.0	19	85	5	51	53	0	0	46	1.00
136416--136465	3	16.7	3	100	0	100	34	0	0	66	0.92
136974--137015	20	2.0	21	86	4	59	61	0	0	38	0.96
137624--137656	4	8.5	4	86	6	50	48	3	0	48	1.17
138212--138264	24	2.2	25	82	3	63	58	1	0	39	1.09
138566--138603	19	2.0	19	89	0	58	39	2	5	52	1.38
140088--140130	2	21.5	2	100	0	86	51	0	0	48	1.00
141259--141305	20	2.4	19	79	13	51	53	0	0	46	1.00
141590--141632	19	2.3	18	88	8	59	34	0	0	65	0.93
141693--141757	26	2.4	28	82	7	80	50	0	1	47	1.10
142204--142253	22	2.3	22	83	12	68	60	10	2	28	1.40
146234--146614	79	4.8	78	76	5	311	27	24	14	33	1.94
159004--159087	23	3.6	22	85	12	107	88	8	1	2	0.66
159002--159087	16	5.5	15	87	9	111	88	8	1	2	0.65
159001--159087	1	87.0	1	77	0	84	88	8	1	2	0.65
160073--161023	122	7.8	122	84	3	1123	25	26	18	28	1.98
160068--161023	183	5.2	183	85	3	1137	25	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160068--161024	306	3.1	305	84	4	1239	25	26	18	28	1.98
161019--161242	88	2.5	86	74	12	213	20	24	12	42	1.87
161280--161746	62	7.6	61	82	2	481	23	25	19	31	1.98
161285--161746	123	3.8	122	82	4	527	24	25	19	30	1.98
160576--162003	722	2.0	717	89	2	2175	23	25	16	34	1.95
161285--161747	61	7.5	60	82	5	439	24	25	19	30	1.98
161711--161791	38	2.1	39	84	6	103	19	25	13	40	1.89
161736--162062	41	7.7	42	72	11	193	21	24	11	42	1.86
161738--162049	42	7.3	40	73	14	173	20	24	11	43	1.85
164982--165092	50	2.2	50	80	4	127	23	16	13	46	1.82
165071--165279	79	2.7	79	77	6	185	26	22	15	35	1.93
165747--165816	33	2.1	33	86	5	97	31	11	17	40	1.85
168374--168416	20	2.2	20	100	0	86	48	13	18	18	1.80
171871--171912	20	2.0	21	95	4	77	40	11	19	28	1.87
173471--173504	11	3.1	11	91	0	59	88	0	0	11	0.52
173471--173502	12	2.7	12	95	0	55	90	0	0	9	0.45
173509--173565	21	2.7	21	97	0	105	33	10	19	36	1.86
173696--173721	13	2.0	13	100	0	52	30	15	15	38	1.88
173676--173742	33	2.0	33	88	0	98	25	14	16	43	1.86
176193--176268	27	2.8	27	90	6	109	22	32	22	22	1.98
176251--176472	52	4.3	51	79	2	219	28	25	13	32	1.93
176460--176531	28	2.6	28	86	0	90	22	33	19	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176082--176582	263	1.9	263	89	3	776	27	26	14	31	1.95
176485--176719	80	2.9	76	75	9	218	26	29	13	30	1.94
313378--313431	17	3.3	17	74	25	62	42	0	0	57	0.98
320108--320158	10	5.1	10	95	0	66	50	5	0	43	1.26
320116--320158	2	21.5	2	95	0	77	51	2	0	46	1.13
320539--320581	20	2.2	20	91	4	70	44	0	0	55	0.99
322107--322139	16	2.1	16	94	0	57	45	0	0	54	0.99
324040--324079	20	2.0	20	100	0	80	25	15	20	40	1.90
327190--327245	23	2.4	23	76	5	60	48	1	1	48	1.22
327239--327286	13	3.4	14	77	16	55	41	0	6	52	1.27
327274--327340	16	4.3	16	83	12	95	56	0	0	43	0.99
327282--327341	29	2.0	30	93	3	104	56	0	0	43	0.99
327249--327340	16	6.2	15	79	13	77	51	0	2	46	1.13
327802--327833	3	10.7	3	100	0	64	65	0	0	34	0.93
330117--330162	14	3.0	16	68	12	51	41	17	8	32	1.80
330166--330226	29	2.0	31	81	6	72	42	6	1	49	1.38
332193--332234	21	2.0	21	100	0	84	33	19	19	28	1.96
334609--334657	21	2.3	21	96	0	89	18	32	10	38	1.84
344372--344687	173	1.8	173	82	6	408	39	12	9	38	1.76
344921--344950	2	15.5	2	93	6	53	53	0	0	46	1.00
345797--345841	23	2.0	23	100	0	90	57	20	13	8	1.62
348873--348923	26	2.0	25	84	3	66	21	1	5	70	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348972--349020	26	2.0	23	84	11	62	55	2	0	42	1.11
350417--350456	17	2.4	17	91	0	62	35	2	0	62	1.09
353785--353809	13	1.9	13	100	0	50	60	0	0	40	0.97
354934--354966	2	16.5	2	93	0	57	51	3	0	45	1.16
359830--359875	24	2.0	24	83	12	60	19	30	6	43	1.76
360349--360380	15	2.1	15	94	0	55	50	0	0	50	1.00
360349--360395	20	2.4	19	86	13	60	51	0	0	48	1.00
360509--360555	21	2.3	19	82	17	51	34	8	6	51	1.58
360773--360838	34	2.1	34	86	11	95	37	1	1	59	1.16
360985--361022	20	2.0	18	90	10	58	63	0	0	36	0.95
360985--361031	19	2.5	19	80	10	53	59	0	0	40	0.97
361460--361484	12	2.1	12	100	0	50	52	8	8	32	1.60
362255--362738	201	2.4	199	77	8	478	39	13	4	41	1.66
374863--374907	2	23.0	2	95	4	83	51	0	0	48	1.00
380683--380737	23	2.4	23	90	0	92	50	23	14	10	1.74
380944--380998	29	2.0	26	82	10	65	43	1	5	49	1.36
382545--382576	9	3.6	9	91	0	55	71	9	18	0	1.12
383417--383513	27	3.5	26	75	10	61	57	5	3	34	1.36
384878--384909	10	3.2	10	90	0	55	53	9	0	37	1.34
385350--385410	16	4.0	15	77	8	61	50	0	6	42	1.28
386774--386818	19	2.4	19	77	7	56	71	2	0	26	0.98
386915--386950	3	12.0	3	93	0	63	30	0	2	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387183--387237	21	2.7	19	75	10	56	50	0	3	45	1.19
387482--387539	25	2.5	21	78	15	62	51	5	0	43	1.24
387701--387744	11	4.0	11	90	0	70	61	2	0	36	1.09
387855--387892	20	1.9	20	88	0	58	63	0	0	36	0.95
387849--387908	27	2.2	27	85	8	77	63	1	0	35	1.05
388224--388266	22	2.0	22	85	0	59	25	16	18	39	1.91
391161--392745	228	7.0	228	92	0	2640	36	14	13	35	1.85
391161--392745	681	2.3	681	93	0	2679	36	14	13	35	1.85
397966--398019	21	2.6	21	93	0	90	22	14	12	50	1.77
410604--410650	23	2.0	25	84	16	64	80	14	2	2	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28