genome.fa.s407.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Length:  4418299

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  20  of  28  ( 3302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2906979--2907784	56	14.2	56	80	8	308	26	15	30	27	1.96
2907416--2907811	27	14.4	27	75	11	329	30	13	31	24	1.94
2907416--2907811	110	3.6	107	82	5	409	30	13	31	24	1.94
2907458--2907811	83	4.3	81	80	8	401	30	14	31	24	1.94
2909105--2909175	21	3.3	21	78	11	81	9	11	7	71	1.30
2909092--2909164	35	2.1	35	82	12	87	9	10	6	72	1.27
2910182--2910319	20	6.3	20	68	17	87	31	14	12	41	1.83
2916996--2917068	20	3.6	20	81	3	101	35	13	19	31	1.91
2917014--2917089	21	3.7	21	78	3	91	40	11	17	30	1.85
2916996--2917089	41	2.3	41	96	0	170	38	12	18	30	1.88
2917128--2917153	13	2.0	13	100	0	52	38	15	15	30	1.88
2921215--2921253	15	2.6	15	91	0	60	51	15	20	12	1.76
2923253--2923330	20	3.7	20	74	15	75	26	15	15	42	1.87
2923319--2923356	13	2.9	13	96	0	67	34	18	15	31	1.92
2925144--2925211	21	3.0	21	80	19	91	23	4	19	52	1.63
2925158--2925210	26	2.0	26	100	0	106	22	3	18	54	1.59
2925168--2925210	13	3.1	15	75	25	58	23	4	18	53	1.63
2925846--2925918	20	3.6	20	81	3	101	35	13	19	31	1.91
2925864--2925939	21	3.7	21	78	3	91	40	11	17	30	1.85
2925846--2925939	41	2.3	41	96	0	170	38	12	18	30	1.88
2934161--2934270	50	2.2	51	82	8	152	42	10	19	27	1.84
2934256--2934310	20	2.8	20	81	8	67	34	14	9	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2935154--2935285	32	4.0	32	73	8	97	25	15	29	29	1.96
2935205--2935679	28	17.0	28	79	9	420	24	16	28	31	1.96
2935202--2935679	56	8.6	56	82	8	519	24	16	28	30	1.96
2935205--2935679	84	5.7	84	81	8	506	24	16	28	31	1.96
2935419--2935457	20	2.0	20	100	0	78	23	10	30	35	1.88
2935390--2935486	48	2.0	48	93	0	167	23	15	28	31	1.95
2936954--2936990	13	2.8	13	91	4	56	0	0	10	89	0.49
2936954--2936990	17	2.2	16	90	4	56	0	0	10	89	0.49
2946233--2946519	52	5.7	51	77	9	243	33	16	26	23	1.96
2946530--2947379	49	17.8	49	76	10	798	31	17	26	25	1.97
2946397--2946629	122	1.9	122	91	1	378	33	17	26	22	1.96
2946519--2947379	101	9.0	101	86	4	835	31	17	26	25	1.97
2946940--2947423	92	5.4	88	87	2	639	29	18	25	27	1.98
2947258--2947417	39	3.9	39	76	13	158	26	20	26	26	1.99
2946748--2947423	271	2.4	275	84	5	819	30	17	26	26	1.97
2947428--2947531	28	3.6	28	90	5	138	15	18	32	33	1.92
2947545--2947809	27	9.1	27	77	14	212	33	13	31	20	1.92
2947516--2947872	60	5.9	59	75	16	263	33	14	31	21	1.92
2947571--2947756	94	2.0	94	85	4	250	35	13	31	19	1.90
2947630--2947872	34	7.8	34	76	14	190	34	13	32	20	1.91
2947608--2947839	121	2.0	115	86	8	324	31	13	33	21	1.92
2947517--2947873	148	2.4	150	84	6	463	33	14	31	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2947846--2948465	32	19.9	32	83	7	631	29	14	31	24	1.94
2947846--2948470	62	10.0	62	85	5	692	30	14	31	24	1.94
2949761--2949808	9	5.1	9	80	14	53	2	0	16	81	0.79
2949749--2949809	11	5.6	11	75	16	65	1	0	18	80	0.80
2949748--2949810	27	2.3	28	81	8	76	1	0	17	80	0.78
2949770--2949818	16	3.0	16	85	11	64	0	2	18	79	0.83
2949749--2949809	14	4.5	13	75	20	63	1	0	18	80	0.80
2949770--2949820	17	3.1	17	83	16	63	0	1	19	78	0.85
2949770--2949827	30	1.9	30	82	6	73	1	3	18	75	1.03
2965600--2965675	20	3.8	20	76	8	75	40	13	11	34	1.81
2966840--2966898	29	2.1	29	83	3	75	40	18	5	35	1.73
2967656--2967686	10	3.1	10	90	0	53	22	29	6	41	1.78
2967674--2967730	22	2.6	22	91	0	96	24	24	14	36	1.92
2967786--2967828	22	2.0	22	100	0	86	27	23	13	34	1.93
2970196--2970220	13	1.9	13	100	0	50	32	16	16	36	1.90
2970828--2970884	19	2.8	21	78	10	82	40	21	12	26	1.88
2972464--2972497	12	2.8	12	90	0	50	41	0	35	23	1.55
2973078--2973133	21	2.8	21	71	15	55	53	7	16	23	1.67
2973080--2973133	22	2.7	21	75	13	60	55	7	14	22	1.64
2977035--2977073	13	3.0	13	96	0	69	30	17	15	35	1.91
2977194--2977240	21	2.3	20	82	10	60	31	19	4	44	1.70
2979616--2979641	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2979598--2979662	32	2.0	32	87	6	94	40	18	13	27	1.89
2981881--2981911	3	10.3	3	92	0	53	35	0	35	29	1.58
2988846--2988871	13	2.0	13	100	0	52	30	15	15	38	1.88
2988859--2988911	20	2.6	21	82	8	65	35	13	16	33	1.88
2988972--2988997	13	2.0	13	100	0	52	30	15	15	38	1.88
2988952--2989019	33	2.1	32	91	2	109	35	19	13	32	1.90
2992914--2992957	22	2.0	23	95	4	81	27	25	13	34	1.93
2992998--2993042	20	2.2	21	80	11	58	33	8	20	37	1.83
2993398--2993460	33	2.0	31	88	11	94	33	12	22	31	1.91
2993991--2994032	11	4.0	11	81	9	52	0	28	0	71	0.86
2994405--2995084	166	4.1	163	80	7	712	51	9	10	28	1.67
2996277--2996639	40	9.1	40	79	4	286	16	23	14	45	1.85
2996277--2996613	80	4.2	79	78	6	322	16	22	15	45	1.84
2996277--2996575	159	1.9	159	83	2	395	16	23	15	45	1.84
2997385--2997437	20	2.6	20	84	3	61	43	7	15	33	1.74
2999994--3000050	19	2.9	19	86	2	78	33	15	15	35	1.90
3006254--3006304	21	2.5	21	81	9	61	39	17	15	27	1.90
3006334--3006401	33	2.1	32	89	8	102	35	16	14	33	1.89
3009130--3009173	22	2.0	22	90	0	70	40	0	25	34	1.56
3009740--3009766	13	2.1	13	100	0	54	29	14	14	40	1.86
3009721--3009786	33	2.0	33	88	5	98	30	16	16	36	1.91
3010653--3010721	27	2.6	26	86	6	102	28	30	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3010680--3010894	98	2.2	97	81	7	265	29	21	11	37	1.88
3010680--3010925	98	2.5	95	77	9	228	28	21	11	37	1.89
3012476--3012516	21	2.0	21	85	0	55	29	9	0	60	1.28
3015000--3015025	13	2.0	13	100	0	52	38	15	15	30	1.88
3014982--3015046	32	2.0	32	87	6	94	40	18	13	27	1.89
3023323--3023374	19	2.7	20	87	6	79	28	13	15	42	1.85
3024480--3024523	21	2.1	21	87	4	63	27	27	9	36	1.87
3026617--3026781	84	2.0	84	83	7	210	24	18	3	52	1.61
3027170--3027211	21	2.0	21	85	0	57	23	28	4	42	1.74
3028811--3028862	19	2.7	20	84	6	70	28	11	15	44	1.81
3030456--3030481	13	2.0	13	100	0	52	38	15	15	30	1.88
3030438--3030502	32	2.0	32	87	6	94	40	18	13	27	1.89
3034010--3034062	19	2.7	20	91	2	81	24	16	18	39	1.91
3034128--3034158	13	2.4	13	94	0	53	35	16	12	35	1.87
3034115--3034178	33	1.9	32	87	12	94	37	14	17	31	1.89
3040331--3040372	13	3.2	13	80	12	59	28	14	16	40	1.88
3045082--3045116	15	2.2	16	90	5	54	51	14	20	14	1.76
3047171--3047195	13	1.9	13	100	0	50	32	16	16	36	1.90
3047305--3047350	21	2.2	20	81	11	58	32	19	4	43	1.71
3052177--3052206	15	1.9	16	93	6	53	33	0	43	23	1.54
3052725--3052789	32	2.0	33	87	3	96	24	16	16	41	1.89
3052861--3052886	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3057699--3057774	20	3.8	20	82	0	98	31	13	14	40	1.84
3057617--3057756	72	1.9	72	92	0	235	28	15	12	42	1.84
3057628--3057820	92	2.1	91	86	2	262	27	15	12	43	1.84
3062885--3062929	20	2.2	20	84	11	56	31	8	11	48	1.69
3069948--3069992	6	7.2	6	82	7	54	62	15	4	17	1.49
3070261--3070299	20	2.0	20	85	5	53	48	5	2	43	1.38
3071557--3071589	17	1.9	17	93	0	57	54	0	15	30	1.41
3071613--3071661	19	2.5	21	74	16	59	48	12	10	28	1.73
3071622--3071665	19	2.4	19	92	3	72	52	9	9	29	1.64
3090987--3091080	49	1.9	49	91	0	152	18	18	12	51	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28