genome.fa.s407.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Length:  4418299

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  26  of  28  ( 3302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4010682--4010751	34	2.1	34	100	0	140	30	12	31	25	1.93
4015563--4015588	13	2.0	13	100	0	52	30	15	15	38	1.88
4015542--4015606	32	2.0	33	93	6	114	27	13	15	43	1.85
4015542--4015606	19	3.6	19	73	26	70	27	13	15	43	1.85
4015658--4015713	20	2.8	20	89	5	78	28	17	16	37	1.91
4019397--4019515	52	2.3	51	94	1	202	30	17	17	34	1.93
4019397--4019535	52	2.7	52	87	5	185	32	17	17	33	1.93
4019521--4019548	13	2.2	13	100	0	56	39	17	14	28	1.89
4019589--4019655	33	2.0	33	88	0	98	40	13	11	34	1.81
4019611--4019635	13	1.9	13	100	0	50	32	16	16	36	1.90
4020415--4020626	52	4.2	52	75	12	199	33	16	25	24	1.96
4020522--4020611	43	2.1	43	91	0	144	30	17	25	26	1.98
4020646--4020785	30	4.9	29	86	6	187	20	17	30	32	1.95
4020617--4020785	85	2.0	86	82	4	207	20	17	30	31	1.96
4020615--4020785	30	5.9	29	84	7	177	21	17	30	30	1.96
4020822--4020909	30	3.0	30	83	3	106	23	17	34	25	1.96
4022352--4022448	1	97.0	1	77	0	68	2	4	8	85	0.79
4022353--4022446	15	5.9	16	75	14	88	2	4	8	85	0.81
4022352--4022445	14	6.4	14	73	20	77	2	4	8	85	0.81
4022352--4022447	16	5.9	16	80	4	93	2	4	8	85	0.80
4022370--4022447	33	2.4	33	84	2	104	1	5	7	85	0.77
4032152--4032178	10	2.7	10	100	0	54	77	22	0	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4036313--4036431	52	2.3	51	94	1	202	30	17	17	34	1.93
4036440--4036464	13	1.9	13	100	0	50	36	16	16	32	1.90
4036505--4036571	33	2.0	33	88	0	98	40	13	11	34	1.81
4036527--4036551	13	1.9	13	100	0	50	32	16	16	36	1.90
4038701--4038738	13	2.9	13	96	0	67	31	15	18	34	1.92
4040797--4040827	15	2.1	15	93	0	53	12	22	16	48	1.80
4044778--4044803	13	2.0	13	100	0	52	30	15	15	38	1.88
4044757--4044821	32	2.0	33	93	6	114	27	13	15	43	1.85
4044757--4044821	19	3.6	19	73	26	70	27	13	15	43	1.85
4044873--4044928	20	2.8	20	89	5	78	28	17	16	37	1.91
4045747--4046161	79	5.2	80	74	8	258	29	20	11	39	1.87
4045786--4046053	80	3.4	77	75	11	229	28	21	12	37	1.90
4045720--4046161	159	2.8	158	78	6	410	28	20	11	39	1.87
4045933--4046162	78	2.9	78	80	7	245	29	22	9	39	1.85
4048294--4048330	2	18.5	2	94	0	65	45	0	2	51	1.15
4050783--4050835	17	3.2	17	82	15	58	37	0	0	62	0.96
4050901--4050992	37	2.4	40	76	20	106	42	2	0	55	1.12
4052508--4052555	24	2.0	25	83	4	62	39	6	0	54	1.26
4052685--4052728	17	2.5	17	77	3	52	43	2	0	54	1.12
4055866--4055918	16	3.4	16	84	10	65	47	0	3	49	1.19
4059327--4059351	13	1.9	13	100	0	50	36	16	16	32	1.90
4059479--4059532	20	2.6	21	86	11	76	37	11	14	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4059590--4059614	13	1.9	13	100	0	50	36	16	16	32	1.90
4059237--4059775	263	2.0	263	98	0	1051	34	15	14	34	1.89
4059678--4059702	13	1.9	13	100	0	50	32	16	16	36	1.90
4059711--4059830	52	2.3	52	92	2	197	34	18	17	30	1.94
4064150--4064472	161	2.0	162	93	1	549	35	9	24	30	1.87
4066653--4066767	51	2.3	51	84	4	160	40	15	13	30	1.87
4067754--4068095	105	3.3	104	81	3	382	37	14	23	25	1.92
4067759--4068091	52	6.4	52	76	6	221	37	14	23	25	1.92
4068034--4068187	80	1.9	80	85	0	209	34	14	24	27	1.94
4068136--4068243	52	2.1	52	85	1	144	37	12	22	27	1.91
4067983--4068227	132	1.9	132	85	1	339	35	15	23	26	1.94
4069211--4069236	13	2.0	13	100	0	52	30	15	15	38	1.88
4069191--4069254	32	2.0	33	87	3	94	28	14	17	40	1.88
4071765--4071802	13	2.9	13	96	0	67	31	15	18	34	1.92
4073878--4073915	15	2.5	15	91	0	58	13	21	15	50	1.78
4077983--4078008	13	2.0	13	100	0	52	30	15	15	38	1.88
4080067--4080143	28	2.8	28	84	4	84	22	19	33	24	1.97
4080129--4080250	51	2.3	51	84	4	154	35	11	23	29	1.90
4082612--4082637	13	2.0	13	100	0	52	38	15	15	30	1.88
4082591--4082657	33	2.0	33	88	0	98	43	16	14	25	1.86
4082677--4082744	19	3.9	18	76	23	83	38	14	11	35	1.83
4082699--4082723	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4082680--4082742	32	2.0	32	96	0	117	36	15	12	34	1.86
4082799--4082844	21	2.2	21	100	0	92	36	21	10	30	1.88
4091530--4091556	13	2.1	13	100	0	54	29	14	14	40	1.86
4091512--4091574	33	1.9	32	87	3	90	26	14	17	41	1.88
4091635--4091660	13	2.0	13	100	0	52	30	15	15	38	1.88
4091930--4092003	34	2.1	35	82	7	89	18	14	10	55	1.68
4092416--4093039	52	11.9	52	81	4	553	35	15	23	25	1.94
4092416--4093008	105	5.7	105	79	5	576	35	15	23	25	1.94
4092416--4093039	158	4.0	155	77	6	538	35	15	23	25	1.94
4093144--4093472	61	5.5	62	72	11	166	31	11	28	27	1.92
4093230--4093506	119	2.3	117	79	10	308	33	11	27	27	1.91
4093192--4093689	90	5.6	89	76	9	288	30	12	29	27	1.93
4093464--4093681	88	2.5	92	81	10	260	29	14	29	26	1.95
4093141--4093731	29	20.1	28	74	10	234	30	13	29	27	1.94
4094115--4094146	9	3.7	9	95	4	57	21	0	25	53	1.46
4094114--4094152	9	4.6	8	90	6	51	25	2	23	48	1.63
4101798--4101845	20	2.3	21	85	3	62	41	10	14	33	1.80
4101883--4101982	52	1.9	52	89	0	155	27	13	16	44	1.84
4102239--4102354	50	2.3	50	98	0	223	39	16	17	26	1.90
4102358--4102426	34	2.0	35	88	2	104	23	18	17	40	1.91
4104416--4104623	98	2.1	98	81	3	240	29	24	9	36	1.87
4105491--4105548	28	2.1	28	96	0	107	43	10	15	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4112379--4112420	21	2.0	21	90	4	68	52	16	11	19	1.74
4112377--4112423	21	2.4	19	86	10	67	48	17	12	21	1.79
4114205--4114504	104	2.9	104	79	7	252	39	15	21	23	1.92
4114290--4114510	52	4.2	52	81	5	234	41	15	21	21	1.90
4114284--4114510	104	2.2	104	86	3	305	41	15	21	22	1.90
4114572--4115467	32	28.0	32	77	7	714	20	17	30	30	1.96
4114563--4115467	256	3.5	252	80	8	884	21	17	30	30	1.96
4115490--4115625	34	4.1	34	77	11	113	44	11	26	17	1.83
4115505--4115659	66	2.3	66	83	4	188	41	12	27	18	1.87
4115505--4115659	33	4.7	33	82	7	154	41	12	27	18	1.87
4115642--4115744	27	3.6	27	76	14	107	34	13	29	22	1.92
4115604--4115744	60	2.3	60	85	2	194	36	14	28	20	1.92
4115643--4115779	60	2.3	60	84	2	168	35	13	29	21	1.91
4115805--4115939	29	4.5	29	75	14	114	38	14	25	22	1.91
4115810--4115969	64	2.5	65	81	9	168	37	13	27	21	1.91
4115827--4115973	65	2.3	65	83	8	185	36	13	28	21	1.91
4124448--4124474	13	2.1	13	100	0	54	29	14	14	40	1.86
4125884--4126125	128	1.9	128	87	3	353	41	12	11	34	1.80
4127048--4127082	12	2.8	13	87	12	56	0	28	0	71	0.86
4127459--4128367	166	5.4	166	80	8	873	51	10	11	27	1.70
4128291--4128323	7	4.6	7	96	3	57	72	3	0	24	0.98
4137023--4137186	86	1.9	86	93	2	285	21	7	20	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4139895--4140760	156	5.6	156	76	8	656	38	21	17	23	1.93
4142125--4142178	20	2.7	20	94	0	90	29	12	20	37	1.90
4142125--4142197	20	3.7	20	86	0	83	35	12	17	34	1.88
4146841--4146915	20	3.8	20	78	7	89	33	16	10	40	1.82
4156013--4156038	13	2.0	13	100	0	52	30	15	15	38	1.88
4158448--4158494	21	2.3	21	82	10	62	44	4	19	31	1.70
4158615--4158653	13	3.0	13	96	0	69	35	15	17	30	1.91
4163197--4163229	9	3.7	9	95	0	57	18	33	3	45	1.65
4164823--4164848	13	2.0	13	100	0	52	30	15	15	38	1.88
4165653--4165690	17	2.1	19	90	9	62	31	0	10	57	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28