genome.fa.s409.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold409
Parameters: 2 7 7 80 10 50 1000
Length:  3905031

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  12  of  25  ( 2882 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1711441--1711487	18	2.6	18	80	12	51	10	0	10	78	0.96
1722489--1722519	16	2.0	16	93	6	55	51	0	9	38	1.35
1725797--1725886	47	1.9	47	97	0	171	43	4	18	33	1.70
1726538--1726593	19	2.9	19	86	2	76	32	19	10	37	1.86
1726622--1726674	20	2.7	20	91	5	81	33	13	20	32	1.91
1730010--1730056	22	2.1	22	80	11	60	42	8	6	42	1.60
1730707--1730804	31	3.0	32	79	7	99	30	8	28	32	1.86
1736398--1736444	21	2.3	20	78	10	51	42	4	19	34	1.70
1738656--1738686	15	2.1	15	93	0	53	12	22	16	48	1.80
1740490--1740534	21	2.1	21	84	8	56	22	20	4	53	1.63
1742751--1742776	13	2.0	13	100	0	52	30	15	15	38	1.88
1746026--1746074	19	2.5	20	86	3	64	28	12	14	44	1.81
1746589--1746672	31	2.5	34	85	11	104	30	9	23	35	1.87
1747149--1747176	3	9.3	3	100	0	56	67	0	0	32	0.91
1747400--1747487	37	2.4	37	86	1	113	70	6	12	10	1.33
1747577--1747627	17	2.7	20	76	17	63	62	7	19	9	1.50
1747585--1747630	17	2.7	17	93	0	74	60	6	21	10	1.52
1750040--1750077	15	2.4	16	86	4	51	34	10	2	52	1.50
1752998--1753033	18	1.9	19	88	5	56	36	13	5	44	1.68
1753826--1753855	13	2.3	13	94	0	51	36	10	20	33	1.86
1753879--1753942	33	1.9	33	83	0	83	26	7	21	43	1.80
1761592--1761621	13	2.3	13	94	0	51	36	10	20	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1771833--1771887	20	2.7	21	88	5	78	40	12	14	32	1.84
1772741--1773086	49	7.4	49	74	15	304	29	18	25	26	1.98
1772645--1773086	101	4.7	101	83	7	338	30	18	25	25	1.98
1772890--1773305	39	9.7	39	67	18	177	28	19	25	26	1.98
1772929--1773370	48	9.9	48	68	18	220	30	18	24	26	1.98
1772842--1773365	87	6.0	87	89	0	706	29	18	24	26	1.98
1773387--1773487	29	3.5	30	77	9	111	21	16	28	32	1.96
1773525--1774065	27	17.7	27	72	21	197	33	12	32	21	1.91
1773545--1773920	34	11.9	34	75	15	317	34	11	33	20	1.89
1773520--1774034	95	5.6	93	79	12	299	33	12	32	21	1.91
1773578--1774034	61	7.5	62	81	10	346	33	12	32	21	1.90
1773579--1773827	122	2.0	121	92	0	408	33	11	33	21	1.89
1773707--1774014	95	3.3	95	84	6	380	33	12	33	21	1.90
1773924--1774669	31	24.0	30	79	10	655	33	15	28	23	1.94
1773924--1774669	62	12.0	62	85	6	793	33	15	28	23	1.94
1782975--1783029	20	2.8	20	88	5	76	40	12	14	32	1.84
1782995--1783173	82	2.2	82	94	0	313	30	15	16	37	1.89
1784765--1784917	42	3.7	41	73	11	116	15	24	17	41	1.89
1784929--1785043	42	2.7	41	82	5	124	19	26	13	40	1.89
1785023--1785125	28	3.7	28	89	1	154	16	24	15	43	1.86
1785111--1785359	83	3.0	84	81	4	263	16	26	18	38	1.91
1785107--1785711	42	14.5	42	73	6	316	16	26	17	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1786132--1786157	13	2.0	13	100	0	52	38	15	15	30	1.88
1786928--1787020	42	2.2	42	84	3	116	17	32	13	36	1.89
1786966--1787047	42	2.0	42	82	4	103	19	28	13	39	1.89
1787259--1787299	21	2.0	21	85	9	57	39	12	9	39	1.76
1787934--1788000	37	1.9	35	88	11	102	32	11	25	29	1.92
1791168--1791192	13	1.9	13	100	0	50	36	16	16	32	1.90
1792825--1792865	21	2.0	21	85	9	57	39	12	9	39	1.76
1792925--1792998	20	3.7	20	81	3	103	35	13	20	31	1.91
1792943--1793018	21	3.7	21	82	3	109	40	11	18	28	1.86
1792925--1793018	41	2.3	41	100	0	188	38	12	19	29	1.89
1793057--1793082	13	2.0	13	100	0	52	38	15	15	30	1.88
1793541--1793607	37	1.9	35	88	11	102	32	11	25	29	1.92
1794316--1794375	3	20.7	3	77	16	56	66	1	1	30	1.11
1794315--1794364	25	2.0	26	84	11	68	66	2	2	30	1.14
1798954--1799017	26	2.5	26	92	5	103	25	7	32	34	1.84
1805230--1805296	21	3.3	21	91	4	93	19	14	17	47	1.82
1805237--1805296	21	2.9	21	95	2	104	20	13	18	48	1.81
1806539--1806594	27	2.1	27	82	0	67	25	32	14	28	1.94
1811507--1811565	32	1.9	30	83	13	75	59	10	10	20	1.58
1811824--1811875	19	2.7	20	87	6	79	28	13	15	42	1.85
1813860--1813902	20	2.1	20	86	4	59	9	25	44	20	1.81
1814330--1814368	13	3.0	13	96	0	69	35	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1816663--1816688	13	2.0	13	100	0	52	38	15	15	30	1.88
1816645--1816708	32	2.0	33	87	3	94	40	17	14	28	1.88
1818942--1818967	13	2.0	13	100	0	52	30	15	15	38	1.88
1819665--1819708	21	2.1	21	83	8	54	25	31	4	38	1.76
1823641--1823666	13	2.0	13	100	0	52	38	15	15	30	1.88
1823623--1823686	32	2.0	33	87	3	94	40	17	14	28	1.88
1828231--1828294	32	2.0	33	87	3	94	29	14	14	42	1.84
1829015--1829223	103	2.0	103	98	0	400	39	7	13	39	1.73
1829511--1829536	13	2.0	13	100	0	52	38	15	15	30	1.88
1829493--1829557	34	2.0	33	90	6	105	46	13	12	27	1.79
1830577--1830628	21	2.6	20	93	6	88	46	15	11	26	1.80
1831666--1831691	13	2.0	13	100	0	52	38	15	15	30	1.88
1831648--1831712	34	2.0	33	90	6	105	46	15	10	27	1.79
1832747--1832772	13	2.0	13	100	0	52	38	15	15	30	1.88
1832729--1832793	34	2.0	33	87	6	96	44	16	10	27	1.81
1833811--1833836	13	2.0	13	100	0	52	38	15	15	30	1.88
1833793--1833857	34	2.0	33	90	6	105	44	16	10	27	1.81
1834877--1834941	21	3.6	19	73	26	70	44	15	12	27	1.82
1834895--1834920	13	2.0	13	100	0	52	38	15	15	30	1.88
1834877--1834941	34	2.0	33	93	6	114	44	15	12	27	1.82
1835961--1836012	21	2.6	20	93	6	88	46	15	11	26	1.80
1837050--1837075	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1837032--1837096	34	2.0	33	90	6	105	46	15	10	27	1.79
1838131--1838156	13	2.0	13	100	0	52	38	15	15	30	1.88
1838113--1838177	34	2.0	33	87	6	96	44	16	10	27	1.81
1839197--1839261	21	3.6	19	73	26	70	44	15	12	27	1.82
1839215--1839240	13	2.0	13	100	0	52	38	15	15	30	1.88
1839197--1839261	34	2.0	33	93	6	114	44	15	12	27	1.82
1840299--1840324	13	2.0	13	100	0	52	38	15	15	30	1.88
1840281--1840345	34	2.0	33	90	6	105	43	15	13	27	1.85
1841366--1841430	21	3.6	19	73	26	70	44	15	12	27	1.82
1841384--1841409	13	2.0	13	100	0	52	38	15	15	30	1.88
1841366--1841430	34	2.0	33	93	6	114	44	15	12	27	1.82
1842450--1842514	21	3.6	19	73	26	70	44	15	12	27	1.82
1842468--1842493	13	2.0	13	100	0	52	38	15	15	30	1.88
1842450--1842514	34	2.0	33	93	6	114	44	15	12	27	1.82
1848470--1848507	13	2.9	13	92	0	58	34	15	15	34	1.90
1848619--1848664	21	2.2	20	81	11	58	32	19	4	43	1.71
1851036--1851100	21	3.6	19	73	26	70	44	15	12	27	1.82
1851054--1851079	13	2.0	13	100	0	52	38	15	15	30	1.88
1851036--1851100	34	2.0	33	93	6	114	44	15	12	27	1.82
1852120--1852181	19	3.6	19	71	24	73	37	17	12	32	1.88
1852119--1852219	32	3.1	32	89	2	148	39	16	11	31	1.85
1856262--1856292	15	2.1	15	93	0	53	48	16	22	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1860915--1860966	21	2.6	20	93	6	88	46	15	11	26	1.80
1862734--1862827	30	3.2	29	79	8	84	27	27	15	28	1.97
1862750--1862887	58	2.3	61	82	8	176	25	28	15	30	1.96
1862770--1863074	91	3.4	89	80	8	300	22	28	16	33	1.95
1862750--1863101	28	11.6	31	74	14	254	23	28	16	32	1.96
1862765--1863039	152	1.8	149	83	5	365	22	28	16	33	1.95
1862863--1863139	61	4.6	61	83	4	296	20	28	15	34	1.94
1863081--1863135	27	2.0	27	85	0	74	23	29	14	32	1.94
1862770--1863170	61	6.6	60	78	8	205	21	28	15	34	1.94
1863103--1863204	35	3.0	33	78	14	100	19	28	11	40	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25