genome.fa.s409.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold409
Parameters: 2 7 7 80 10 50 1000
Length:  3905031

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  21  of  25  ( 2882 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3203621--3203745	52	2.4	52	95	0	223	28	17	18	36	1.94
3203840--3203864	13	1.9	13	100	0	50	32	16	16	36	1.90
3203819--3203884	32	2.0	33	88	2	98	39	13	12	34	1.82
3207664--3207716	8	6.5	8	77	12	54	79	1	0	18	0.83
3207672--3207704	15	2.2	15	94	0	57	78	0	0	21	0.75
3207665--3207708	11	3.9	11	79	5	52	79	0	0	20	0.73
3208216--3208344	64	2.0	64	90	0	204	34	36	15	13	1.87
3208274--3208471	74	2.7	74	80	1	200	33	33	17	15	1.91
3211259--3211294	17	2.1	17	100	0	72	22	27	27	22	1.99
3215710--3215757	20	2.5	20	89	3	71	29	12	20	37	1.90
3215799--3215850	21	2.5	21	75	9	54	28	15	15	40	1.88
3215860--3215900	20	2.0	20	90	0	64	26	12	21	39	1.89
3216406--3216450	22	2.0	22	91	8	74	35	28	0	35	1.58
3217824--3217875	20	2.4	21	81	12	61	5	23	50	21	1.70
3218311--3218359	13	3.8	13	83	0	53	36	22	10	30	1.87
3218309--3218360	26	2.0	26	88	0	77	36	21	11	30	1.89
3222570--3222595	13	2.0	13	100	0	52	30	15	15	38	1.88
3223227--3223330	47	2.4	39	75	23	118	36	24	4	34	1.77
3223242--3223332	47	1.9	47	100	0	182	35	24	5	35	1.79
3223245--3223320	25	3.2	25	64	17	70	32	27	5	34	1.79
3234398--3234449	20	2.7	20	90	3	79	28	11	21	38	1.88
3244193--3244286	20	4.7	20	84	2	118	41	11	13	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3244193--3244286	40	2.3	40	87	0	134	41	11	13	32	1.81
3245239--3245734	28	17.5	29	85	4	647	23	17	30	28	1.97
3245239--3245734	85	5.8	86	87	2	684	23	17	30	28	1.97
3245239--3245730	142	3.5	142	88	2	693	22	17	30	29	1.97
3249870--3250018	52	2.9	52	91	2	237	31	17	17	33	1.93
3250084--3250148	19	3.7	19	71	28	72	40	15	12	32	1.84
3250076--3250146	32	2.2	32	95	5	126	38	16	12	32	1.87
3250936--3251736	49	16.8	49	79	9	784	32	17	25	25	1.97
3250836--3251736	49	18.8	49	77	10	753	32	16	25	25	1.97
3251234--3251736	43	11.0	43	78	11	484	31	16	25	26	1.97
3251090--3251736	92	7.0	92	90	2	940	31	17	25	25	1.97
3251768--3251898	33	4.0	32	79	7	129	35	13	30	19	1.91
3251776--3251906	34	4.0	34	76	12	121	35	13	29	20	1.91
3251776--3252039	30	8.4	31	80	10	209	32	14	29	23	1.94
3251776--3251906	65	2.0	67	82	5	160	35	13	29	20	1.91
3252199--3252243	16	2.9	16	83	3	56	2	4	6	86	0.76
3252211--3252245	18	1.9	18	88	11	54	2	2	2	91	0.56
3252199--3252245	15	3.1	14	77	22	51	2	4	6	87	0.74
3266319--3266363	21	2.1	21	84	8	56	53	4	20	22	1.63
3268167--3268197	15	2.1	15	93	0	53	48	16	22	12	1.80
3270263--3270289	13	2.1	13	100	0	54	29	14	14	40	1.86
3276074--3276147	20	3.7	20	78	7	87	40	12	13	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3277333--3277407	19	3.8	19	83	5	87	32	16	17	34	1.92
3277488--3277606	52	2.3	52	98	0	229	36	15	16	30	1.91
3283694--3283719	13	2.0	13	100	0	52	30	15	15	38	1.88
3285547--3285585	18	2.1	19	90	4	62	56	0	30	12	1.37
3285590--3285658	18	3.7	19	72	12	63	34	2	30	31	1.73
3285581--3285632	18	2.8	18	72	13	52	34	5	26	32	1.80
3285581--3285657	37	2.1	37	90	4	120	35	3	29	31	1.76
3286198--3286224	13	2.1	13	100	0	54	29	14	14	40	1.86
3286210--3286265	19	2.8	21	86	8	80	33	14	17	33	1.90
3286294--3286357	33	1.9	32	87	12	94	37	10	18	32	1.86
3287444--3287495	19	2.7	19	90	3	77	30	17	15	36	1.91
3290169--3290207	21	1.9	20	94	5	69	35	15	12	35	1.86
3290173--3290533	173	2.1	173	96	0	668	39	14	14	31	1.86
3296564--3296640	28	2.8	28	82	4	84	20	18	35	25	1.95
3296490--3296757	107	2.5	107	90	1	385	29	16	27	26	1.97
3296671--3296742	28	2.6	28	80	8	83	25	20	31	22	1.98
3296734--3296950	51	4.2	51	81	4	211	34	11	23	29	1.91
3296623--3297125	262	1.9	263	91	1	830	32	12	26	28	1.93
3296993--3297126	53	2.6	51	81	8	162	32	9	26	32	1.88
3296734--3297116	52	7.3	53	70	10	164	32	11	26	29	1.91
3298253--3298291	19	2.2	19	86	9	55	56	12	15	15	1.68
3310647--3310715	29	2.3	29	82	5	75	10	15	7	66	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3310683--3310764	39	2.1	39	86	4	112	3	15	9	70	1.28
3310948--3311003	29	1.9	29	88	0	85	12	19	19	48	1.80
3310984--3311042	29	2.0	29	93	0	100	10	23	13	52	1.71
3311254--3311284	5	6.2	5	92	0	53	41	16	22	19	1.89
3311244--3311284	10	4.3	10	87	9	50	43	14	21	19	1.87
3312408--3312500	31	3.0	31	74	3	89	27	32	24	15	1.95
3312721--3312802	31	2.6	31	81	11	105	31	31	21	14	1.94
3312424--3313021	149	4.0	149	83	3	648	30	26	23	20	1.98
3312870--3312977	31	3.1	37	69	20	115	31	28	24	15	1.96
3313574--3313706	59	2.3	59	83	0	167	44	16	14	24	1.85
3317086--3317225	64	2.2	64	86	1	199	33	35	15	15	1.89
3317155--3317352	74	2.7	74	80	1	200	33	32	17	16	1.92
3324571--3324622	20	2.7	20	90	3	79	28	11	21	38	1.88
3324664--3324716	20	2.6	21	82	8	65	32	16	13	37	1.88
3324704--3324728	13	1.9	13	100	0	50	36	16	16	32	1.90
3325284--3325328	22	2.0	22	91	8	74	35	28	0	35	1.58
3326702--3326753	20	2.4	21	81	12	61	5	26	48	19	1.71
3327400--3327425	8	3.2	8	100	0	52	61	23	0	15	1.33
3329632--3329689	19	3.0	19	78	12	64	25	10	22	41	1.85
3332189--3332214	13	2.0	13	100	0	52	38	15	15	30	1.88
3333611--3333677	37	1.9	35	88	11	102	29	25	11	32	1.92
3334136--3334161	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3334116--3334179	32	2.0	33	90	3	103	28	14	15	42	1.86
3336085--3336109	13	1.9	13	100	0	50	32	16	16	36	1.90
3339305--3339371	37	1.9	35	88	11	102	29	25	11	32	1.92
3339830--3339855	13	2.0	13	100	0	52	30	15	15	38	1.88
3339810--3339873	32	2.0	33	90	3	103	28	14	15	42	1.86
3341176--3341206	15	2.1	15	93	0	53	12	22	16	48	1.80
3345765--3345869	28	3.8	28	93	2	167	30	17	28	23	1.97
3345895--3346028	53	2.5	53	91	0	214	35	15	23	24	1.94
3346014--3346110	28	3.5	28	92	0	149	23	19	34	22	1.97
3346099--3346219	51	2.4	51	84	8	156	29	11	27	31	1.92
3346122--3346220	51	1.9	52	91	2	164	32	11	26	30	1.91
3347146--3347215	18	3.8	18	73	16	63	8	22	37	31	1.85
3347175--3347259	43	2.0	43	92	0	143	8	18	40	32	1.81
3347921--3348184	50	5.3	50	94	0	474	15	26	14	43	1.85
3347921--3348184	100	2.6	100	100	0	528	15	26	14	43	1.85
3348807--3349510	62	11.5	62	85	5	868	26	20	28	24	1.99
3348807--3349500	122	5.7	121	88	4	959	26	20	28	24	1.99
3348834--3349510	184	3.7	182	86	5	952	26	20	28	24	1.99
3351703--3351770	19	3.9	19	78	21	85	35	11	14	38	1.83
3351724--3351748	13	1.9	13	100	0	50	36	16	16	32	1.90
3351705--3351767	32	2.0	32	96	0	117	34	12	15	36	1.86
3351810--3351835	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3351790--3351856	33	2.0	33	88	0	98	25	14	16	43	1.86
3354319--3354389	27	2.6	27	86	6	90	23	33	21	21	1.97
3354374--3354544	51	3.3	50	79	8	189	29	26	11	32	1.92
3354527--3354608	28	2.9	28	80	7	87	24	30	17	28	1.97
3367121--3367225	28	3.8	28	91	2	158	30	16	28	24	1.96
3367251--3367384	53	2.5	53	92	0	223	35	15	24	24	1.94
3367370--3367550	28	6.5	28	93	0	290	23	19	34	22	1.97
3367539--3367659	51	2.4	51	86	8	165	30	11	26	31	1.91
3367562--3367660	51	1.9	52	93	2	173	33	11	25	30	1.90
3368617--3368677	31	2.0	31	90	0	95	9	21	36	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25