genome.fa.s409.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold409
Parameters: 2 7 7 80 10 50 1000
Length:  3905031

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  24  of  25  ( 2882 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3732665--3733370	158	4.5	156	79	5	599	38	21	18	22	1.94
3732665--3733269	154	3.9	154	81	6	587	38	21	18	22	1.93
3735501--3735547	22	2.1	22	84	11	60	25	21	2	51	1.59
3735522--3735628	39	2.7	41	82	10	141	31	22	3	42	1.71
3735525--3735628	40	2.6	42	83	10	153	31	23	3	41	1.72
3742491--3742717	79	2.9	79	76	9	221	33	14	25	26	1.94
3742800--3742940	50	2.9	49	83	6	160	40	9	21	28	1.84
3742832--3742940	50	2.2	50	90	3	166	41	9	22	26	1.84
3745232--3745306	20	3.8	20	83	0	96	42	12	16	29	1.83
3745594--3745644	20	2.5	20	84	6	59	33	23	11	31	1.91
3745674--3745718	20	2.3	20	88	3	65	35	11	22	31	1.89
3755878--3755918	20	2.0	20	86	9	57	34	7	19	39	1.80
3755889--3755927	20	1.9	20	84	5	51	38	7	20	33	1.81
3761443--3761514	30	2.4	30	83	0	81	26	16	16	40	1.90
3763329--3763505	79	2.2	79	85	5	250	27	24	14	33	1.94
3763375--3763631	130	2.0	130	84	4	340	28	23	11	36	1.90
3763488--3763787	79	3.8	80	80	4	322	29	22	11	36	1.90
3763728--3763841	51	2.2	51	85	3	158	30	23	10	35	1.89
3763567--3764002	210	2.1	210	85	1	588	29	24	12	33	1.92
3763328--3764051	289	2.5	289	83	5	860	29	24	12	34	1.92
3763777--3764051	79	3.5	79	78	4	275	29	25	12	32	1.93
3763794--3764029	80	3.0	79	80	5	255	29	25	11	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3770690--3770717	12	2.3	12	100	0	56	39	21	25	14	1.91
3773503--3773555	9	5.7	9	86	6	70	84	1	1	11	0.77
3773511--3773555	19	2.4	19	88	7	65	84	0	2	13	0.72
3774526--3775201	61	11.0	61	78	4	641	26	25	18	30	1.98
3774526--3775201	183	3.7	183	79	5	715	26	25	18	30	1.98
3774998--3775201	59	3.4	60	82	6	229	25	24	21	28	1.99
3775704--3775870	50	3.3	50	85	0	226	29	16	11	42	1.84
3778211--3778968	79	9.6	78	80	5	657	28	24	13	34	1.92
3778210--3778968	238	3.2	236	82	4	875	28	24	13	34	1.92
3778903--3779010	51	2.1	51	86	5	146	31	19	13	35	1.91
3778824--3779089	131	2.0	130	81	5	304	29	23	13	33	1.93
3778923--3779021	51	1.9	51	87	4	146	32	22	11	34	1.89
3779175--3779883	236	3.0	236	98	0	1373	31	18	11	39	1.86
3780539--3780603	33	2.0	33	90	0	103	41	16	16	24	1.89
3786272--3786309	3	12.7	3	100	0	76	31	34	0	34	1.58
3789780--3789804	13	1.9	13	100	0	50	36	16	16	32	1.90
3789759--3789825	33	2.0	34	91	2	109	34	11	16	37	1.85
3789866--3789890	13	1.9	13	100	0	50	32	16	16	36	1.90
3789845--3789910	32	2.0	33	91	2	107	37	16	10	34	1.83
3790685--3791030	52	7.1	49	78	12	365	32	18	26	23	1.97
3790797--3791025	43	5.0	43	74	12	206	29	18	26	24	1.98
3790751--3791025	93	2.9	92	87	2	379	30	18	25	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3791093--3791553	59	7.8	59	93	0	773	23	16	29	30	1.97
3807055--3807126	19	3.7	19	94	1	117	38	18	11	31	1.85
3808130--3808292	88	1.9	88	81	2	202	44	12	20	22	1.85
3808510--3808832	111	2.9	111	83	5	377	40	13	13	32	1.84
3810628--3810658	8	3.9	8	95	0	53	25	6	25	41	1.79
3813300--3813633	153	2.2	156	78	5	385	38	19	17	24	1.93
3815497--3815561	33	2.0	33	87	0	94	35	12	12	40	1.80
3815602--3815666	20	3.6	20	73	26	81	27	18	15	38	1.91
3815621--3815646	13	2.0	13	100	0	52	30	15	15	38	1.88
3815602--3815667	33	2.0	33	100	0	132	27	18	15	39	1.90
3815635--3815783	52	2.9	50	86	6	199	33	17	16	32	1.93
3815655--3815785	52	2.5	52	94	0	226	34	17	16	31	1.93
3819345--3819945	160	3.7	162	80	9	582	48	7	12	32	1.68
3819503--3820095	327	1.8	326	81	5	750	48	6	11	32	1.67
3819505--3820158	167	4.0	166	78	7	381	48	7	12	32	1.69
3822085--3822115	16	1.9	16	93	0	53	38	6	12	41	1.69
3823891--3824126	51	4.6	51	75	8	183	38	21	16	23	1.93
3824454--3824535	33	2.5	33	89	0	128	26	19	14	39	1.90
3825275--3825533	79	3.3	78	85	5	353	26	26	14	32	1.95
3825568--3825672	28	3.8	27	87	5	115	21	29	20	27	1.98
3825655--3825773	51	2.3	51	81	2	150	26	24	15	33	1.95
3825627--3825867	130	1.9	130	81	6	301	26	23	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3826512--3826645	51	2.6	51	77	2	144	34	22	17	25	1.96
3831503--3831558	17	3.0	20	76	15	64	35	17	12	33	1.88
3832418--3832467	19	2.6	19	77	3	55	32	12	16	40	1.84
3835729--3835781	20	2.6	20	93	3	88	39	11	18	30	1.86
3835729--3835802	21	3.6	20	88	3	94	37	12	18	31	1.88
3838191--3838290	20	4.5	20	73	22	92	24	15	16	45	1.85
3838191--3838344	70	2.2	69	88	3	220	24	16	16	41	1.89
3840693--3841205	130	3.9	130	80	6	502	28	25	12	32	1.93
3840883--3841002	51	2.4	51	88	0	186	29	26	13	30	1.94
3840931--3841081	79	1.9	79	89	2	232	29	29	13	28	1.94
3841010--3841132	51	2.4	51	83	2	140	29	30	13	27	1.94
3840693--3841205	260	2.0	259	81	5	615	28	25	12	32	1.93
3844634--3845201	311	1.8	312	81	5	720	39	19	16	24	1.92
3844578--3845270	155	4.5	156	76	6	622	39	19	16	25	1.91
3845481--3845934	162	2.8	160	86	2	626	41	14	10	33	1.80
3847383--3847870	167	2.9	165	81	8	526	51	8	13	26	1.69
3851350--3851411	19	3.6	19	75	24	82	35	16	16	32	1.91
3851366--3851424	13	5.2	12	75	24	65	37	16	15	30	1.90
3851350--3851445	32	3.0	32	95	1	165	37	15	15	31	1.89
3853713--3853750	13	2.9	13	88	11	60	36	15	18	28	1.92
3857949--3858062	49	2.3	51	92	3	187	42	11	17	28	1.84
3858907--3860383	28	53.2	28	79	10	564	26	15	30	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3859318--3860375	27	38.4	27	81	9	864	27	14	30	26	1.95
3859369--3860258	54	16.2	54	84	4	964	29	13	30	26	1.94
3860264--3860406	55	2.5	55	85	4	169	24	17	27	30	1.97
3860267--3860406	29	4.9	29	83	6	142	25	17	27	29	1.98
3860417--3860455	14	2.9	13	85	7	51	38	15	12	33	1.85
3869407--3869431	13	1.9	13	100	0	50	32	20	16	32	1.94
3869502--3869557	21	2.6	22	88	5	96	39	10	23	26	1.87
3869599--3869735	53	2.6	53	94	1	238	26	17	18	37	1.93
3869723--3869777	21	2.7	20	80	5	65	30	14	16	38	1.89
3873125--3873149	13	1.9	13	100	0	50	32	16	16	36	1.90
3875889--3875961	20	3.6	20	79	3	92	36	12	17	32	1.87
3875906--3875982	21	3.7	21	74	6	77	42	10	16	29	1.82
3875889--3875982	41	2.3	41	92	3	154	39	11	18	30	1.86
3876021--3876046	13	2.0	13	100	0	52	38	15	15	30	1.88
3880107--3880137	15	2.1	15	93	0	53	48	16	22	12	1.80
3882216--3882254	13	3.0	13	96	0	69	30	17	15	35	1.91
3884693--3884765	20	3.6	20	81	3	101	36	13	17	31	1.89
3884710--3884786	21	3.7	21	77	6	86	42	11	16	28	1.84
3884693--3884786	41	2.3	41	94	3	163	39	12	18	29	1.88
3884825--3884850	13	2.0	13	100	0	52	38	15	15	30	1.88
3891355--3891548	32	6.1	31	84	8	192	22	31	14	30	1.94
3891389--3891729	34	10.4	32	80	13	268	22	34	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3891486--3891729	34	7.3	34	84	6	313	22	36	12	29	1.91
3891487--3891729	69	3.6	68	89	5	347	22	35	12	29	1.91
3891486--3891729	103	2.5	96	88	6	346	22	36	12	29	1.91
3891716--3891784	32	2.2	32	94	5	124	28	36	17	17	1.93
3891782--3892770	49	20.7	49	83	7	1059	24	26	17	31	1.97
3891782--3892770	141	6.9	141	87	6	1325	24	26	17	31	1.97
3891777--3892726	92	10.1	92	81	10	960	24	26	17	30	1.97
3892523--3892835	52	6.0	52	86	3	389	23	25	15	34	1.95
3893461--3893485	13	1.9	13	100	0	50	36	16	16	32	1.90
3893474--3893531	21	2.8	21	97	2	109	25	10	10	53	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25