genome.fa.s409.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold409
Parameters: 2 7 7 80 10 50 1000
Length:  3905031

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  7  of  25  ( 2882 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994630--996170	159	9.5	158	81	13	1046	20	34	13	31	1.91
995074--996000	34	29.1	28	72	18	318	20	34	13	31	1.91
994630--996143	326	4.7	313	80	14	1312	20	34	13	32	1.91
994656--996142	678	2.2	678	97	1	2791	20	34	13	31	1.91
995935--996180	37	7.1	35	82	10	290	19	34	10	34	1.87
995935--996179	70	3.5	69	87	3	341	20	33	11	35	1.87
994915--996195	97	13.0	102	75	17	593	20	34	12	31	1.90
996184--996249	33	2.0	34	96	3	125	27	37	18	16	1.92
995593--996228	104	6.4	102	75	15	372	20	35	12	31	1.90
996249--996733	49	9.7	49	88	4	691	24	26	17	32	1.96
996249--997492	101	11.9	101	76	13	1002	24	25	16	33	1.95
996812--996997	43	3.9	49	83	11	233	26	23	17	32	1.96
996545--997430	265	3.3	265	97	1	1661	25	24	15	34	1.95
997077--997429	49	6.9	49	73	16	270	25	24	16	33	1.95
997086--997220	43	3.0	44	86	7	191	26	23	18	31	1.98
997177--997559	55	6.8	54	70	16	242	24	24	15	36	1.94
997179--997567	167	2.3	169	92	3	647	24	24	14	35	1.93
998366--998432	33	2.0	33	88	0	98	34	11	13	40	1.81
998386--998410	13	1.9	13	100	0	50	36	16	16	32	1.90
998477--998501	13	1.9	13	100	0	50	32	16	16	36	1.90
998510--998630	52	2.3	52	94	0	215	34	17	18	29	1.94
1003990--1004042	21	2.6	21	77	17	58	32	13	15	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1006371--1006396	13	2.0	13	100	0	52	30	15	15	38	1.88
1007095--1007140	16	2.8	16	93	6	74	30	39	2	28	1.69
1008946--1008984	13	3.0	13	96	0	69	35	15	17	30	1.91
1008970--1009048	20	3.7	20	70	20	70	45	16	12	25	1.82
1011058--1011095	15	2.5	15	91	0	58	13	21	15	50	1.78
1015160--1015185	13	2.0	13	100	0	52	30	15	15	38	1.88
1016954--1016986	17	2.0	17	88	5	50	24	0	3	72	0.98
1017764--1017805	16	2.6	16	85	11	50	26	2	0	71	0.98
1018977--1019005	13	2.1	14	93	6	51	51	0	0	48	1.00
1020323--1020413	44	2.0	45	85	6	123	25	15	24	35	1.94
1021350--1021426	24	3.2	24	68	17	77	19	12	3	63	1.44
1021329--1021429	49	2.1	49	100	0	202	18	13	3	63	1.45
1021329--1021402	25	3.0	25	68	16	73	17	14	4	63	1.45
1024404--1024437	17	1.9	18	88	5	52	55	5	0	38	1.24
1025059--1025137	37	2.1	39	88	4	117	24	13	30	31	1.94
1026634--1026669	2	18.0	2	94	0	63	50	2	0	47	1.15
1029154--1029191	19	2.0	20	94	5	69	21	5	34	39	1.76
1032522--1032569	3	16.0	3	100	0	96	33	0	0	66	0.92
1032814--1032844	15	2.1	15	94	5	55	45	0	3	51	1.17
1033338--1033375	18	2.1	19	85	9	53	28	2	5	63	1.30
1033861--1033922	29	2.1	29	85	5	81	43	14	22	19	1.87
1035340--1035369	6	4.8	6	92	8	51	33	3	0	63	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1035340--1035369	13	2.4	12	94	5	51	33	3	0	63	1.11
1036055--1036101	4	11.8	4	95	0	85	74	0	25	0	0.82
1036178--1036417	15	16.4	14	74	8	113	24	16	22	36	1.94
1036164--1036415	29	8.6	29	74	7	170	25	16	21	37	1.93
1038931--1039625	134	5.2	135	77	5	486	25	23	15	35	1.94
1038796--1039532	67	11.0	68	69	10	313	25	23	15	35	1.94
1040271--1040566	15	20.2	14	76	8	178	25	16	22	36	1.94
1040252--1040571	29	10.9	30	74	9	167	25	16	21	36	1.94
1040252--1040462	44	4.8	44	85	1	255	26	17	20	36	1.94
1040279--1040556	44	6.3	44	78	5	215	25	16	22	35	1.94
1043186--1043210	13	1.9	13	100	0	50	36	16	16	32	1.90
1044297--1044376	21	3.8	21	79	15	78	38	13	15	32	1.86
1051652--1051686	11	3.0	12	91	8	63	51	22	8	17	1.72
1058000--1058177	52	3.4	52	93	0	302	26	16	19	37	1.93
1058000--1058197	52	3.8	51	90	2	281	27	16	19	36	1.93
1058000--1058197	104	1.9	104	91	2	326	27	16	19	36	1.93
1058186--1058210	13	1.9	13	100	0	50	36	16	16	32	1.90
1058272--1058296	13	1.9	13	100	0	50	32	16	16	36	1.90
1058251--1058316	32	2.0	33	94	2	116	36	16	12	34	1.86
1059045--1059366	48	6.7	49	81	7	309	31	19	26	23	1.98
1059052--1059366	100	3.3	97	79	8	365	30	20	25	23	1.98
1059498--1059587	35	2.6	35	81	6	105	37	13	28	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1059564--1059886	29	11.1	29	85	4	402	26	16	28	28	1.97
1059564--1059859	115	2.6	115	94	1	504	27	16	29	27	1.97
1059564--1059886	86	3.7	87	84	6	404	26	16	28	28	1.97
1061539--1061564	13	2.0	13	100	0	52	30	15	15	38	1.88
1061518--1061582	32	2.0	33	93	6	114	27	12	15	44	1.82
1061518--1061582	19	3.6	19	73	26	70	27	12	15	44	1.82
1064920--1064952	15	2.2	15	94	0	57	15	6	30	48	1.69
1064945--1065021	16	4.8	16	77	1	73	9	6	33	50	1.60
1064976--1065029	16	3.4	16	78	0	54	9	7	35	48	1.63
1066026--1066064	16	2.4	16	100	0	78	17	12	23	46	1.83
1066004--1066071	16	4.2	16	82	12	68	19	16	23	41	1.90
1068141--1068199	32	1.9	30	83	13	75	59	10	10	20	1.58
1068462--1068510	19	2.5	20	90	6	82	30	12	14	42	1.82
1068540--1068613	20	3.7	20	82	8	78	29	17	13	39	1.88
1070973--1071010	13	2.9	13	96	0	67	31	15	18	34	1.92
1073054--1073084	15	2.1	15	93	0	53	12	22	16	48	1.80
1074887--1074931	21	2.1	21	84	8	56	22	20	4	53	1.63
1076799--1076857	32	1.9	30	83	13	75	59	10	10	20	1.58
1077120--1077168	19	2.5	20	90	6	82	30	12	14	42	1.82
1077198--1077271	20	3.7	20	82	8	78	29	17	13	39	1.88
1079631--1079668	13	2.9	13	96	0	67	31	15	18	34	1.92
1090555--1090732	52	3.4	52	96	0	320	27	17	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1090555--1090752	52	3.8	51	92	2	299	28	17	18	34	1.94
1090741--1090765	13	1.9	13	100	0	50	36	16	16	32	1.90
1090802--1090867	32	2.0	33	91	2	107	36	12	13	37	1.82
1094001--1094074	20	3.7	20	87	0	112	41	10	13	33	1.79
1096752--1096776	13	1.9	13	100	0	50	32	16	16	36	1.90
1097747--1097779	15	2.2	15	94	0	57	39	12	9	39	1.74
1097861--1097925	31	2.1	30	81	13	71	20	30	4	44	1.71
1098930--1098994	33	2.0	33	90	0	103	33	16	12	36	1.87
1100224--1100506	106	2.7	105	82	3	325	35	10	21	31	1.88
1102668--1102714	22	2.1	22	84	4	58	2	23	0	74	0.93
1104231--1104266	18	1.9	18	88	5	54	19	19	5	55	1.62
1104238--1104278	18	2.3	18	87	8	57	19	17	7	56	1.64
1104964--1104995	11	2.9	11	95	0	55	43	0	18	37	1.51
1106336--1106690	44	8.0	45	72	12	205	44	15	20	19	1.86
1106339--1106548	46	4.7	46	79	8	155	46	15	20	17	1.84
1106474--1106695	89	2.5	89	81	0	264	42	15	21	20	1.88
1107122--1107279	85	1.9	83	84	7	212	29	17	20	32	1.95
1109966--1110032	20	3.3	20	78	0	89	31	16	13	38	1.87
1113582--1113632	20	2.5	21	75	9	61	31	19	7	41	1.80
1113655--1113710	19	2.9	19	86	2	76	37	12	17	32	1.88
1115580--1115637	19	3.0	19	84	2	71	24	12	20	43	1.86
1117689--1117731	20	2.1	20	82	4	50	9	27	44	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1118172--1118197	13	2.0	13	100	0	52	38	15	15	30	1.88
1121382--1121426	22	2.1	21	84	8	56	22	15	6	55	1.63
1121371--1121426	21	2.7	21	75	13	62	23	14	7	55	1.63
1121991--1122024	12	2.8	12	90	0	50	23	35	0	41	1.55
1123618--1123643	13	2.0	13	100	0	52	30	15	15	38	1.88
1123598--1123662	32	2.0	33	87	3	96	27	13	16	41	1.87
1125534--1125571	13	2.9	13	92	0	58	42	13	10	34	1.78
1126004--1126062	32	1.9	30	83	13	75	59	10	10	20	1.58
1126312--1126374	32	1.9	33	93	6	110	26	11	15	46	1.80
1126312--1126374	13	3.5	19	72	28	66	26	11	15	46	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25