genome.fa.s9.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold9
Parameters: 2 7 7 80 10 50 1000
Length:  3883850

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  10  of  24  ( 2830 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1433369--1433439	28	2.6	28	86	2	90	29	18	29	22	1.97
1433240--1433439	109	1.8	110	84	1	276	34	16	23	26	1.95
1433426--1433605	51	3.5	51	80	3	184	33	11	26	28	1.90
1435828--1435857	13	2.3	13	94	0	51	40	13	20	26	1.89
1436431--1436598	42	3.9	44	77	12	152	40	13	26	19	1.89
1436431--1436592	45	3.7	46	80	12	130	39	14	26	19	1.90
1436587--1436982	60	6.6	61	85	6	465	29	19	26	24	1.98
1436588--1436982	121	3.3	121	83	7	497	29	19	26	24	1.98
1436998--1437291	60	4.9	60	87	5	335	26	18	27	28	1.98
1436666--1437386	335	2.2	335	89	2	1092	28	18	27	25	1.98
1436744--1437256	275	1.9	272	87	6	712	27	19	27	25	1.99
1437238--1437419	89	2.0	93	83	6	237	31	17	26	24	1.97
1438404--1438436	7	4.9	7	88	3	50	9	0	12	78	0.95
1438404--1438451	13	3.7	13	81	8	53	6	0	12	81	0.87
1447639--1447704	33	2.0	33	87	0	96	37	12	18	31	1.87
1447736--1447848	19	5.7	19	78	7	109	33	15	14	36	1.88
1447774--1447846	21	3.6	21	79	20	100	28	15	16	39	1.89
1447755--1447847	40	2.3	40	98	0	177	31	16	15	37	1.89
1448479--1448704	49	4.9	49	80	11	253	32	17	24	25	1.97
1448476--1448704	92	2.5	91	91	2	361	32	17	24	25	1.97
1448743--1449327	29	19.8	29	78	9	576	23	17	29	29	1.97
1450756--1450832	8	9.2	8	80	10	59	2	1	12	83	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1450747--1450832	30	2.8	30	83	11	88	2	2	13	81	0.89
1450767--1450832	30	2.2	30	86	7	91	0	1	13	84	0.68
1450757--1450829	37	2.0	37	84	10	96	2	1	13	82	0.85
1460292--1460335	21	2.1	21	83	8	54	25	31	4	38	1.76
1462139--1462164	13	2.0	13	100	0	52	38	15	15	30	1.88
1464236--1464266	15	2.1	15	93	0	53	12	22	16	48	1.80
1466067--1466111	21	2.1	21	84	8	56	22	20	4	53	1.63
1468327--1468352	13	2.0	13	100	0	52	30	15	15	38	1.88
1468433--1468486	20	2.7	20	100	0	108	24	11	18	46	1.81
1472120--1472186	37	1.9	35	88	11	102	29	25	11	32	1.92
1472656--1472681	13	2.0	13	100	0	52	38	15	15	30	1.88
1472742--1472793	21	2.4	21	90	3	86	34	11	26	26	1.91
1472787--1472811	10	2.5	10	100	0	50	40	0	32	28	1.57
1472835--1472971	53	2.6	53	94	1	238	27	16	18	37	1.92
1472941--1473011	20	3.5	20	77	11	74	29	12	16	40	1.86
1473051--1473091	21	2.0	21	85	9	57	39	9	12	39	1.76
1476146--1476173	13	2.2	13	100	0	56	39	17	14	28	1.89
1476225--1476374	19	8.8	18	66	27	87	33	16	15	34	1.90
1476217--1476351	32	4.2	32	96	0	243	34	17	14	33	1.91
1482172--1482210	19	2.1	19	95	0	69	35	15	17	30	1.91
1483112--1483228	51	2.3	51	77	1	137	34	10	23	31	1.89
1483169--1483473	108	2.8	107	84	5	339	35	15	22	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1483213--1483473	109	2.4	107	87	5	375	34	16	23	25	1.95
1483460--1483639	51	3.5	51	79	3	193	33	10	25	30	1.89
1485707--1485732	13	2.0	13	100	0	52	30	15	15	38	1.88
1485792--1485864	20	3.6	20	81	3	101	31	19	13	35	1.91
1485771--1485864	41	2.3	41	96	0	170	30	18	12	38	1.88
1485771--1485846	21	3.7	21	78	3	91	30	17	11	40	1.85
1487131--1487185	20	2.8	20	94	0	92	43	12	16	27	1.84
1495579--1495651	20	3.7	19	81	7	67	38	16	16	28	1.90
1496657--1496730	20	3.8	19	84	8	87	29	16	17	36	1.92
1501181--1501211	14	2.2	14	100	0	62	32	0	25	41	1.56
1503090--1503130	21	1.9	22	85	5	57	31	19	0	48	1.49
1504872--1504912	22	1.9	22	85	5	57	36	4	34	24	1.77
1516227--1516285	8	6.9	8	79	14	57	84	10	1	3	0.80
1516225--1516276	10	5.3	10	76	4	61	86	9	0	3	0.69
1516225--1516287	19	3.3	18	82	8	72	85	9	1	3	0.77
1516223--1516276	20	2.8	21	84	15	73	83	9	0	7	0.82
1516226--1516287	28	2.2	28	85	0	79	85	9	1	3	0.78
1517263--1518325	55	18.4	58	82	9	1082	27	28	20	24	1.99
1517263--1518325	171	6.2	169	84	6	1223	27	28	20	24	1.99
1517267--1518325	232	4.6	227	83	8	1120	27	28	20	24	1.99
1519186--1519248	21	3.0	21	85	0	90	41	11	19	28	1.85
1519694--1519719	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1519678--1519740	34	1.9	32	87	6	90	44	17	11	26	1.82
1525865--1525928	13	4.9	13	94	0	110	34	18	15	31	1.93
1525865--1525928	26	2.5	26	100	0	128	34	18	15	31	1.93
1526040--1526085	21	2.2	20	81	11	58	32	19	4	43	1.71
1528472--1528496	13	1.9	13	100	0	50	36	16	16	32	1.90
1531721--1531820	28	3.6	28	93	5	159	22	32	20	26	1.98
1531805--1532025	51	4.2	52	78	6	178	29	25	10	34	1.90
1531850--1532025	53	3.4	52	82	5	203	30	25	10	33	1.90
1531850--1532025	51	3.4	50	81	8	199	30	25	10	33	1.90
1532013--1532084	28	2.6	28	84	0	90	22	34	19	23	1.96
1532038--1532271	79	3.0	76	78	9	238	26	27	14	31	1.94
1536875--1536900	13	2.0	13	100	0	52	38	15	15	30	1.88
1536857--1536920	32	2.0	33	90	3	103	39	18	14	28	1.90
1539124--1539168	21	2.1	21	84	8	56	53	4	20	22	1.63
1540971--1541001	15	2.1	15	93	0	53	48	16	22	12	1.80
1543080--1543105	13	2.0	13	100	0	52	30	15	15	38	1.88
1545006--1545095	39	2.4	39	96	3	166	52	0	16	31	1.44
1545572--1545627	20	2.8	19	89	5	76	39	14	16	30	1.88
1545686--1545711	13	2.0	13	100	0	52	38	15	15	30	1.88
1545668--1545731	32	2.0	33	87	3	94	40	18	12	28	1.87
1555673--1555697	13	1.9	13	100	0	50	36	16	16	32	1.90
1555762--1555786	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1555795--1555910	52	2.2	52	93	0	196	36	18	15	30	1.92
1555795--1555925	52	2.5	52	86	4	183	35	17	15	31	1.91
1559027--1559328	79	3.8	79	86	0	397	31	14	25	27	1.95
1559264--1559375	51	2.2	51	87	3	154	32	10	27	29	1.90
1559345--1559406	31	2.0	31	84	6	81	32	4	29	33	1.78
1561758--1561796	20	1.9	21	94	5	71	33	17	12	35	1.88
1570277--1570408	32	4.1	32	81	7	149	25	24	10	39	1.87
1570342--1570387	24	1.9	24	86	0	65	26	21	8	43	1.81
1570411--1570464	20	2.7	20	94	0	99	35	11	18	35	1.86
1572553--1572611	21	2.8	21	89	0	82	61	0	20	18	1.35
1575331--1575356	13	2.0	13	100	0	52	30	15	15	38	1.88
1575311--1575374	32	2.0	33	90	3	103	28	14	18	39	1.90
1575311--1575381	19	4.0	18	72	25	62	26	12	21	39	1.89
1577166--1577190	13	1.9	13	100	0	50	32	16	16	36	1.90
1577512--1577549	20	1.9	20	100	0	76	39	10	15	34	1.82
1579157--1579302	20	6.7	20	76	14	121	43	11	15	29	1.81
1579195--1579241	22	2.1	22	96	0	85	36	10	21	31	1.88
1579174--1579312	72	2.0	70	88	2	206	44	11	15	28	1.81
1580099--1580152	20	2.7	20	97	0	99	37	20	7	35	1.81
1582649--1582676	3	9.3	3	100	0	56	32	0	0	67	0.91
1587721--1587758	17	2.1	19	85	9	53	55	13	5	26	1.59
1590273--1590301	14	2.0	15	93	6	51	62	13	0	24	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1590589--1590624	16	2.2	16	95	0	63	44	0	0	55	0.99
1590906--1590944	17	2.2	17	86	13	53	25	2	0	71	0.98
1594678--1595140	228	2.0	228	92	2	770	36	12	12	38	1.81
1603762--1603827	20	3.7	20	73	26	83	39	15	18	27	1.90
1603645--1603773	52	2.5	52	94	0	231	29	18	17	34	1.94
1603782--1603839	13	4.9	13	72	23	65	37	15	17	29	1.90
1603761--1603839	33	2.4	33	100	0	158	39	15	17	27	1.90
1603884--1603967	13	5.5	13	71	28	60	35	17	13	33	1.89
1603892--1603954	19	3.7	18	76	24	73	36	17	12	33	1.88
1603762--1603969	32	6.4	32	79	9	167	34	15	16	32	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24