genome.fa.s9.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold9
Parameters: 2 7 7 80 10 50 1000
Length:  3883850

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  24  of  24  ( 2830 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3782217--3782284	19	3.9	19	78	21	85	35	11	14	38	1.83
3782238--3782262	13	1.9	13	100	0	50	36	16	16	32	1.90
3782219--3782281	32	2.0	32	96	0	117	34	12	15	36	1.86
3782324--3782349	13	2.0	13	100	0	52	30	15	15	38	1.88
3782304--3782370	33	2.0	33	88	0	98	25	14	16	43	1.86
3784843--3785013	51	3.3	52	81	11	190	29	25	13	31	1.94
3784711--3784959	134	1.9	132	81	9	301	29	24	12	32	1.93
3784700--3785093	185	2.1	186	91	3	634	29	25	12	31	1.93
3784943--3785121	80	2.2	82	87	2	281	29	27	13	29	1.95
3785082--3785153	28	2.6	28	88	0	99	22	34	19	23	1.96
3785107--3785328	78	2.8	78	77	2	221	25	29	15	29	1.96
3789175--3789213	18	2.2	18	90	0	60	84	2	2	10	0.81
3790704--3790867	27	5.9	27	78	11	170	22	35	12	29	1.91
3790683--3790883	61	3.4	59	78	11	234	23	34	11	30	1.90
3790870--3791007	32	4.4	32	78	13	144	32	30	14	22	1.94
3790873--3791000	64	2.0	63	83	8	161	32	29	14	22	1.94
3791068--3791349	49	5.5	50	75	13	175	25	25	16	32	1.96
3791065--3791205	49	2.8	50	83	5	176	25	28	17	29	1.97
3791168--3791356	103	1.9	100	86	3	270	24	24	15	34	1.94
3791294--3791490	61	3.2	61	89	2	279	24	24	11	39	1.88
3792211--3792288	20	3.8	21	76	6	79	38	15	8	37	1.79
3797425--3797468	23	1.9	24	86	9	65	40	22	6	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3797865--3797918	20	2.7	20	97	0	99	35	22	12	29	1.91
3797947--3797997	19	2.6	20	90	3	86	35	13	19	31	1.91
3797969--3798030	32	1.9	32	86	3	88	37	12	17	32	1.88
3808381--3808452	20	3.6	20	76	0	72	40	9	13	36	1.78
3814018--3814066	24	2.0	24	88	0	71	55	6	4	34	1.44
3815355--3815392	2	19.5	2	94	5	69	50	0	0	50	1.00
3815577--3815634	21	2.8	21	84	2	64	41	0	1	56	1.09
3817908--3818058	78	1.9	78	94	0	266	49	14	16	19	1.79
3818283--3818962	337	2.0	340	85	3	924	51	13	12	22	1.75
3831339--3832207	42	20.7	42	70	9	342	18	28	17	36	1.93
3831314--3832041	84	8.7	84	80	3	707	18	28	17	35	1.94
3831341--3832117	126	6.2	125	73	8	493	18	28	17	36	1.93
3831969--3832285	84	3.8	82	74	8	262	17	26	18	37	1.93
3831984--3832336	168	2.1	169	88	1	521	17	24	17	39	1.91
3832194--3832438	127	1.9	126	84	4	323	17	22	17	41	1.90
3831984--3832376	169	2.3	168	86	3	504	17	24	18	38	1.92
3832194--3832471	127	2.2	127	82	3	319	18	23	17	40	1.91
3835037--3835061	13	1.9	13	100	0	50	24	16	20	40	1.91
3835018--3835080	33	1.9	32	87	3	90	25	17	17	39	1.91
3835050--3835103	19	2.8	20	91	2	83	29	16	18	35	1.93
3841327--3841355	13	2.2	13	100	0	58	27	13	17	41	1.87
3843232--3843310	22	3.4	22	67	13	59	32	3	30	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3843859--3843883	13	1.9	13	100	0	50	36	16	16	32	1.90
3843838--3843902	33	2.0	32	87	3	94	30	16	15	36	1.90
3843868--3843924	19	3.0	20	84	7	82	33	17	17	31	1.93
3843974--3844022	13	4.2	13	73	24	54	32	10	18	38	1.84
3843953--3844022	34	2.1	33	86	7	97	32	11	20	35	1.88
3847227--3847564	96	3.5	96	83	2	401	31	12	26	29	1.93
3850182--3850237	19	2.9	19	83	2	67	35	14	17	32	1.90
3850819--3850862	22	2.1	22	87	8	65	43	18	4	34	1.70
3851576--3851625	21	2.4	21	83	9	59	48	0	20	32	1.50
3851583--3851625	21	2.0	22	86	4	61	51	0	20	27	1.48
3851788--3851826	20	1.9	21	89	5	62	30	17	12	38	1.88
3859820--3859866	9	5.2	9	80	7	51	23	0	2	74	0.93
3859799--3859849	27	1.9	26	88	4	75	23	0	1	74	0.92
3859808--3859851	19	2.2	20	88	8	63	20	0	2	77	0.88
3859799--3859866	28	2.5	28	83	7	77	25	0	1	73	0.92
3859820--3859873	28	1.9	28	84	0	72	29	0	1	68	1.00
3865650--3865999	82	4.3	83	80	8	389	29	24	11	34	1.91
3865681--3865991	164	1.9	163	85	4	430	30	23	11	34	1.90
3868676--3869008	102	3.3	102	80	4	357	31	14	26	27	1.95
3868713--3869008	103	2.9	101	82	4	353	32	15	24	28	1.95
3870461--3870491	13	2.4	13	94	0	53	35	12	16	35	1.87
3870536--3870590	19	2.9	19	86	8	76	36	18	16	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3870575--3870601	13	2.1	13	100	0	54	40	14	14	29	1.86
3871145--3871196	21	2.4	21	90	3	77	28	30	1	38	1.68
3872994--3873030	18	2.0	19	89	5	58	16	0	43	40	1.48
3879548--3879578	15	2.1	15	93	0	53	48	16	22	12	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24

The End!