genome.fa.s6.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  14  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5692755--5692781	2	13.5	2	100	0	54	48	0	0	51	1.00
5693108--5693185	38	2.1	38	85	4	104	44	20	7	26	1.78
5694078--5694133	27	2.1	27	89	0	85	50	1	1	46	1.22
5710523--5710637	58	2.0	57	91	1	185	44	13	16	25	1.85
5731726--5731853	57	2.2	57	89	5	188	53	12	12	21	1.71
5733979--5734051	36	2.1	35	81	2	83	34	6	23	35	1.81
5749743--5749804	23	2.7	23	82	7	72	56	1	1	40	1.19
5749868--5749911	23	2.0	22	81	4	52	43	0	4	52	1.22
5749979--5750085	45	2.4	45	83	7	123	42	5	0	51	1.32
5754200--5754257	26	2.2	26	84	6	73	58	5	3	32	1.37
5754581--5754616	15	2.4	15	90	9	56	16	8	0	75	1.04
5754876--5754984	25	4.3	25	76	9	105	38	8	11	42	1.70
5754891--5755020	51	2.5	51	87	3	172	36	10	10	42	1.75
5756893--5756930	19	2.0	20	89	5	60	44	5	2	47	1.39
5759789--5759950	42	3.9	42	84	0	207	28	16	33	22	1.95
5759771--5759956	84	2.2	84	87	0	255	29	16	32	22	1.95
5764032--5764084	15	3.5	15	78	14	56	60	1	0	37	1.08
5779054--5779088	2	17.5	2	100	0	70	48	0	0	51	1.00
5781022--5781055	15	2.4	14	90	5	50	64	0	0	35	0.94
5781022--5781065	17	2.9	15	81	15	54	63	0	0	36	0.95
5781035--5781314	91	3.1	91	83	3	343	47	4	4	43	1.43
5781384--5781441	22	2.6	22	83	5	64	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5781398--5781431	17	2.1	17	89	10	54	52	0	0	47	1.00
5786024--5786077	24	2.3	23	78	12	56	22	3	1	72	1.10
5786651--5786689	2	19.5	2	100	0	78	48	0	0	51	1.00
5786700--5786728	13	2.2	13	100	0	58	62	6	10	20	1.50
5790401--5790456	21	2.8	20	72	5	58	55	3	0	41	1.17
5795388--5795468	42	1.9	42	82	9	103	60	2	1	35	1.18
5795543--5795580	17	2.2	18	90	4	60	39	0	0	60	0.97
5795538--5795584	19	2.5	20	76	20	55	38	0	0	61	0.96
5807950--5807975	6	4.3	6	100	0	52	30	69	0	0	0.89
5813734--5813807	29	2.7	27	75	19	80	56	2	2	37	1.28
5814508--5814552	22	2.0	24	86	8	67	51	0	0	48	1.00
5814871--5814901	13	2.4	13	94	0	53	64	19	6	9	1.45
5824197--5824247	27	2.0	26	85	14	70	29	0	5	64	1.17
5825700--5825732	16	2.1	16	100	0	66	12	18	18	51	1.76
5845639--5845669	16	1.9	16	93	0	53	45	0	0	54	0.99
5845956--5846058	23	4.6	21	75	16	75	54	0	1	43	1.11
5845942--5846092	40	3.7	39	81	13	153	53	0	1	43	1.16
5845949--5846092	15	10.3	15	67	25	68	52	0	2	44	1.17
5846401--5846442	19	2.2	19	83	8	50	61	4	9	23	1.45
5863511--5863560	25	2.0	25	88	7	75	10	6	20	64	1.45
5865103--5865153	25	2.0	25	92	0	84	9	5	21	62	1.47
5866288--5866341	27	2.0	27	96	0	99	27	11	16	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5870720--5870762	14	3.2	13	77	9	50	51	0	23	25	1.49
5878882--5878918	18	2.1	18	100	0	74	29	5	21	43	1.75
5878967--5879068	51	2.0	51	100	0	204	33	7	13	45	1.73
5889663--5889706	22	2.0	22	81	0	52	27	6	15	50	1.70
5891868--5891898	2	15.5	2	93	0	53	45	3	0	51	1.17
5901463--5901499	18	2.1	18	90	10	58	45	16	16	21	1.84
5923720--5923744	4	6.2	4	100	0	50	24	0	0	76	0.80
5924884--5924996	56	2.0	56	92	0	190	28	10	31	29	1.90
5926538--5926605	13	5.5	13	68	25	58	38	2	0	58	1.13
5926532--5926615	24	3.5	24	98	0	159	36	4	0	58	1.19
5927792--5927825	16	2.1	16	94	0	59	35	5	11	47	1.65
5929705--5929747	17	2.7	15	82	10	50	25	0	11	62	1.29
5931597--5931663	15	4.4	15	86	1	80	35	10	22	31	1.88
5931883--5932062	21	8.5	22	72	18	116	34	1	0	63	1.04
5931876--5932088	32	6.4	32	66	22	86	35	1	0	62	1.06
5931807--5932139	108	3.0	109	92	6	539	33	2	0	63	1.13
5931870--5932054	80	2.4	77	76	12	182	35	2	0	62	1.07
5931820--5932255	14	31.4	14	64	24	96	32	2	0	63	1.14
5931807--5932139	111	3.0	111	92	6	554	33	2	0	63	1.13
5931818--5932139	27	11.8	26	71	15	190	33	2	0	63	1.14
5932094--5932176	32	2.5	31	77	12	78	28	2	1	67	1.11
5932128--5932213	38	2.3	37	80	5	93	31	3	1	63	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5932112--5932264	40	3.7	41	73	17	106	30	2	1	65	1.14
5932152--5932272	49	2.4	53	75	13	128	33	1	0	64	1.09
5932209--5932257	13	3.6	13	78	10	53	28	2	0	69	1.00
5932207--5932252	22	2.1	22	84	8	58	30	2	0	67	1.03
5942306--5942360	22	2.5	22	85	5	58	34	1	3	60	1.25
5944408--5944466	30	1.9	31	86	3	84	11	23	5	59	1.52
5951573--5951631	29	2.0	29	80	6	66	20	6	1	71	1.18
5963053--5963134	35	2.3	35	95	0	146	43	28	6	21	1.76
5963391--5963416	4	6.5	4	100	0	52	23	50	0	26	1.50
5967794--5967867	35	2.1	35	100	0	148	45	5	13	35	1.66
5988973--5989015	17	2.8	16	79	13	54	51	0	2	46	1.13
5989291--5989318	11	2.5	11	100	0	56	71	0	0	28	0.86
5992372--5992406	12	2.8	13	86	8	54	62	2	0	34	1.10
5994309--5994342	2	17.0	2	100	0	68	50	0	0	50	1.00
5994474--5994522	20	2.4	22	80	13	59	48	2	4	44	1.33
6001240--6001304	32	2.0	32	100	0	130	21	15	12	50	1.76
6009804--6009838	15	2.3	15	85	0	52	42	5	2	48	1.41
6011361--6011393	16	2.1	16	94	0	57	63	3	0	33	1.10
6011542--6011572	14	2.1	15	94	5	55	80	0	0	19	0.71
6011724--6011773	24	2.1	24	88	0	73	66	0	0	34	0.92
6014231--6014268	14	3.1	12	85	14	51	81	0	18	0	0.69
6030779--6030806	14	2.0	14	100	0	56	21	28	14	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6035200--6035225	2	13.0	2	100	0	52	50	0	0	50	1.00
6040940--6041023	44	1.9	44	95	0	150	48	8	13	29	1.71
6065137--6065184	24	2.0	24	95	0	87	27	18	8	45	1.78
6065242--6065274	2	16.5	2	93	0	57	48	48	0	3	1.17
6096119--6096155	19	1.9	19	88	0	56	54	0	2	43	1.14
6098166--6098195	2	15.0	2	92	0	51	46	3	0	50	1.18
6102562--6102607	18	2.8	17	75	12	51	26	23	30	19	1.98
6102562--6102614	15	3.3	15	74	23	54	26	22	32	18	1.97
6102622--6102720	18	5.7	18	79	7	105	24	21	37	17	1.94
6119835--6119875	17	2.4	17	95	0	73	63	2	0	34	1.08
6120039--6120065	14	1.9	14	100	0	54	66	7	3	22	1.33
6120555--6120589	16	2.1	17	89	5	54	25	17	2	54	1.57
6127409--6127447	15	2.6	16	88	12	64	56	0	2	41	1.13
6128414--6128446	2	16.5	2	100	0	66	48	0	0	51	1.00
6138942--6138978	18	2.1	18	94	0	65	40	5	24	29	1.77
6139842--6139927	3	28.3	3	80	2	100	60	0	38	1	1.04
6139854--6139952	24	4.0	23	75	19	76	60	1	35	3	1.19
6139843--6139953	12	9.5	11	74	19	68	60	0	36	2	1.17
6154005--6154058	26	2.1	26	85	0	72	40	0	0	59	0.98
6154017--6154065	25	1.9	26	91	4	82	36	0	0	63	0.95
6157799--6158472	348	1.9	355	82	9	855	44	7	7	40	1.59
6171019--6171243	125	1.8	122	89	2	351	45	12	17	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6181036--6181062	5	5.4	5	100	0	54	0	40	0	59	0.98
6197987--6198017	3	10.3	3	92	0	53	64	0	0	35	0.94
6208427--6208452	2	13.0	2	100	0	52	50	0	50	0	1.00
6209312--6209388	30	2.7	27	82	9	91	40	2	0	57	1.13
6216919--6216965	2	23.5	2	86	0	67	46	6	0	46	1.28
6218559--6218613	17	3.2	17	75	10	58	10	14	9	65	1.47
6219827--6219873	3	15.7	3	84	0	58	31	4	36	27	1.76
6220886--6220914	15	1.9	15	100	0	58	13	6	37	41	1.72
6230367--6230424	17	3.6	17	69	21	52	44	0	1	53	1.10
6230414--6230460	24	2.0	24	83	8	60	34	0	4	61	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22