genome.fa.s6.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  16  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6789873--6789922	22	2.3	20	77	12	55	60	0	0	40	0.97
6789878--6789925	25	2.0	25	84	12	64	58	0	0	41	0.98
6794164--6794240	38	2.0	38	100	0	154	28	12	27	31	1.93
6798766--6798793	2	14.0	2	100	0	56	0	50	0	50	1.00
6801762--6801877	57	2.0	57	94	0	205	24	20	12	43	1.86
6803186--6803271	41	2.1	41	88	0	127	20	12	22	44	1.85
6806694--6806728	18	1.9	18	94	0	61	68	0	28	2	1.04
6810182--6810206	2	12.5	2	100	0	50	48	0	52	0	1.00
6814212--6814240	2	14.5	2	100	0	58	51	0	0	48	1.00
6818946--6818979	15	2.3	15	89	0	50	29	8	58	2	1.43
6836418--6836674	3	86.7	3	64	21	71	4	33	1	60	1.26
6836448--6836677	12	17.2	13	67	20	86	5	33	0	60	1.25
6836336--6836529	91	2.2	91	80	10	222	4	32	2	60	1.28
6836481--6836605	66	1.9	64	96	3	232	7	31	0	61	1.23
6836364--6836677	77	4.0	77	73	17	238	5	32	1	60	1.28
6836575--6836616	11	4.0	11	81	9	52	0	28	2	69	1.01
6836495--6836633	31	4.4	31	71	20	99	6	30	0	61	1.26
6836575--6836679	31	3.4	31	75	17	85	1	33	1	62	1.17
6836702--6836786	21	4.1	21	70	10	59	2	37	2	57	1.24
6836746--6836813	24	2.7	24	90	9	84	0	33	2	63	1.10
6836744--6836824	24	3.2	24	72	14	74	0	35	2	61	1.09
6836873--6836916	21	2.1	21	82	0	52	4	31	2	61	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6836773--6837199	108	4.3	101	78	13	355	6	33	3	57	1.41
6836997--6837040	3	15.0	3	83	4	54	4	31	0	63	1.14
6839374--6839578	69	2.8	69	73	15	189	40	8	8	41	1.66
6839432--6839597	78	2.1	79	85	3	228	37	6	10	45	1.63
6840731--6840779	25	2.0	25	83	0	62	46	2	2	48	1.25
6840777--6840801	12	2.1	12	100	0	50	68	0	0	32	0.90
6841105--6841163	30	1.9	32	83	13	79	38	3	1	55	1.26
6842226--6842273	18	2.7	18	93	0	78	22	16	16	43	1.87
6862457--6862499	3	14.3	3	90	0	50	32	0	9	58	1.30
6862458--6862499	15	2.8	15	92	0	66	33	0	9	57	1.31
6875743--6876355	310	2.0	311	84	3	806	46	7	4	41	1.53
6876042--6876749	347	2.1	341	83	6	876	45	7	4	42	1.53
6878310--6878349	13	3.1	13	81	0	53	35	5	2	57	1.34
6880593--6880652	31	2.0	31	96	3	113	45	3	13	38	1.60
6883634--6883659	3	8.7	3	100	0	52	34	0	0	65	0.93
6892095--6892136	21	2.0	22	86	13	63	54	4	0	40	1.21
6923068--6923094	2	13.5	2	100	0	54	51	0	48	0	1.00
6926339--6926364	13	2.0	13	100	0	52	76	0	0	23	0.78
6926336--6926402	31	2.2	30	84	10	82	68	1	1	28	1.07
6926436--6926515	31	2.5	32	82	8	92	72	0	0	27	0.85
6926453--6926515	32	2.0	31	87	3	90	74	0	0	25	0.82
6926473--6926801	108	3.0	109	90	7	528	63	0	2	32	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6926632--6926773	28	5.1	27	72	14	85	61	0	3	33	1.18
6926658--6926727	9	7.1	10	76	11	56	70	0	0	30	0.88
6926666--6926733	24	2.9	25	72	12	72	67	0	0	32	0.91
6926551--6926722	20	8.3	20	68	25	76	65	0	1	32	1.08
6926474--6926801	107	3.0	108	85	12	460	63	0	2	32	1.15
6926948--6926983	15	2.4	15	95	0	63	33	27	8	30	1.86
6949026--6949065	13	2.9	15	78	17	50	32	12	0	55	1.38
6952211--6952283	29	2.5	28	80	10	85	35	0	4	60	1.16
6955879--6956018	62	2.3	62	83	0	181	38	11	25	24	1.89
6961347--6961371	11	2.3	11	100	0	50	0	8	0	92	0.40
6961920--6961948	3	10.0	3	92	7	51	65	0	34	0	0.93
6970483--6970515	3	11.0	3	93	0	57	33	3	0	63	1.10
6973062--6973086	12	2.1	12	100	0	50	60	0	0	40	0.97
6973156--6973199	22	2.0	22	82	8	54	47	13	0	38	1.43
6985562--6985596	17	2.1	17	94	0	61	85	0	14	0	0.59
7002278--7002351	29	2.6	27	73	10	67	33	1	2	62	1.18
7004467--7004601	60	2.2	62	88	5	193	26	5	17	51	1.66
7004498--7004618	60	2.0	60	85	0	161	28	6	16	48	1.71
7009270--7009341	23	3.2	22	72	5	72	33	18	11	37	1.86
7009263--7009369	45	2.4	45	82	1	124	36	18	9	35	1.83
7009496--7009623	61	2.1	59	81	5	141	42	11	7	38	1.69
7015360--7015389	2	15.0	2	100	0	60	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7017097--7017139	20	2.2	19	83	4	50	46	0	0	53	1.00
7017719--7017783	33	2.0	33	84	6	87	44	6	12	36	1.67
7017721--7017791	33	2.2	33	82	5	81	45	7	12	35	1.70
7021996--7022728	183	4.0	183	86	2	1078	20	21	19	38	1.94
7034641--7034709	34	2.0	35	88	5	106	60	0	1	37	1.06
7034784--7034821	19	2.0	20	84	5	51	50	7	0	42	1.31
7039727--7039932	108	1.9	108	84	4	272	35	13	3	47	1.61
7040577--7040635	19	3.4	19	71	22	65	28	23	16	30	1.97
7040566--7040645	33	2.4	33	95	0	142	32	22	13	31	1.93
7040589--7040641	14	3.4	14	72	22	52	30	22	13	33	1.92
7051530--7051660	57	2.3	57	83	7	151	41	25	3	29	1.70
7051686--7051749	21	3.2	21	65	24	57	45	31	0	23	1.53
7051622--7051774	38	4.0	38	78	6	166	43	28	2	26	1.68
7068050--7068080	16	1.9	16	93	0	53	61	6	16	16	1.54
7070329--7070362	16	2.1	17	89	10	54	64	2	0	32	1.08
7070345--7070416	21	3.4	20	68	24	58	66	6	6	19	1.38
7090393--7090417	2	12.5	2	100	0	50	48	0	0	52	1.00
7095053--7095113	30	2.0	30	90	0	95	39	1	1	57	1.18
7098343--7098500	79	2.0	79	83	2	201	38	18	9	33	1.83
7099883--7099922	20	2.0	20	85	9	55	27	5	2	65	1.27
7099883--7099922	19	2.0	20	85	4	55	27	5	2	65	1.27
7105852--7105889	1	38.0	1	100	0	76	0	100	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7110713--7110745	16	2.1	16	100	0	66	24	18	6	51	1.68
7114952--7115015	32	2.0	32	87	0	92	40	14	6	39	1.71
7140301--7140331	14	2.1	14	94	5	53	77	0	3	19	0.90
7149467--7149514	24	2.0	24	100	0	96	29	8	41	20	1.81
7149471--7149527	24	2.4	24	90	0	87	35	8	36	19	1.83
7157780--7157819	17	2.4	17	95	4	73	45	17	5	32	1.70
7159412--7159484	23	3.2	23	80	20	98	54	0	0	45	0.99
7159419--7159514	43	2.2	45	80	9	110	54	1	1	43	1.14
7159457--7159492	18	2.0	18	88	0	54	55	0	0	44	0.99
7159390--7159484	46	2.0	50	87	8	144	54	0	0	45	0.99
7159416--7159517	46	2.3	46	83	9	124	54	0	0	43	1.13
7173305--7173335	2	15.5	2	100	0	62	48	0	0	51	1.00
7176142--7176186	21	2.1	21	91	0	72	35	6	6	51	1.55
7176921--7176969	13	3.8	14	71	17	52	63	0	0	36	0.95
7176912--7176993	33	2.5	33	80	9	96	60	1	0	37	1.04
7182634--7182750	59	2.0	60	86	1	164	29	17	22	29	1.97
7197768--7197799	2	16.0	2	100	0	64	0	50	0	50	1.00
7199411--7199436	3	8.7	3	100	0	52	69	0	30	0	0.89
7207602--7207631	2	15.0	2	100	0	60	50	0	0	50	1.00
7210074--7210256	88	2.1	87	84	3	233	21	26	7	44	1.79
7210667--7210733	27	2.5	26	80	2	71	38	10	11	38	1.77
7210608--7211081	124	3.8	123	79	6	434	41	9	13	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7210983--7211159	97	1.8	97	86	0	255	41	11	14	32	1.82
7211166--7211227	27	2.3	27	86	2	90	37	9	14	38	1.79
7211166--7211238	27	2.7	27	83	6	78	38	10	13	36	1.80
7212429--7212454	3	8.7	3	100	0	52	69	0	30	0	0.89
7219969--7220012	16	2.8	16	78	0	52	22	4	4	68	1.27
7220842--7220918	32	2.4	32	84	2	93	20	12	55	10	1.66
7220870--7220929	31	1.9	31	82	0	75	20	10	58	11	1.61
7224369--7224407	2	19.5	2	100	0	78	48	0	0	51	1.00
7231007--7231070	8	7.9	8	74	19	53	48	1	6	43	1.37
7231091--7231143	26	2.0	26	82	14	63	60	3	0	35	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22