genome.fa.s6.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  22  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10220742--10220802	30	2.0	30	87	0	86	27	21	9	40	1.85
10233331--10233366	2	18.0	2	88	0	54	50	0	50	0	1.00
10234328--10234353	10	2.6	10	100	0	52	7	0	0	92	0.39
10237865--10238271	210	1.9	211	88	4	608	28	16	23	31	1.96
10238718--10238794	37	2.1	38	97	2	147	28	23	11	36	1.90
10238948--10238993	22	2.1	21	84	11	58	65	0	0	34	0.93
10243149--10243178	3	10.0	3	92	0	51	63	0	3	33	1.11
10260013--10260037	2	12.5	2	100	0	50	48	0	0	52	1.00
10274762--10274792	3	10.3	3	100	0	62	32	0	0	67	0.91
10288380--10288429	26	1.9	26	91	0	82	28	12	4	56	1.54
10294551--10294581	2	15.5	2	93	0	53	51	3	0	45	1.17
10295245--10295274	3	10.0	3	92	0	51	36	30	33	0	1.58
10300658--10300722	15	4.3	15	84	2	67	36	9	21	32	1.85
10300929--10301346	15	25.9	15	66	22	133	33	2	0	63	1.11
10300915--10301309	113	3.5	113	94	3	696	33	2	0	63	1.12
10301047--10301121	6	12.0	6	75	10	53	29	0	0	70	0.87
10300937--10301235	21	13.5	21	68	23	138	33	2	0	63	1.10
10301266--10301346	31	2.6	29	81	13	90	29	1	0	69	0.97
10301203--10301345	65	2.2	64	79	8	148	33	2	0	63	1.11
10301331--10301450	54	2.4	47	79	16	127	29	2	2	65	1.18
10301380--10301447	14	5.4	12	75	20	59	26	1	1	70	1.04
10301383--10301461	20	4.1	19	73	18	65	31	1	1	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10301391--10301458	32	2.1	33	86	13	97	30	1	0	67	0.99
10301378--10301446	6	10.8	6	73	14	50	26	1	1	71	1.03
10307634--10307683	2	25.0	2	95	0	91	48	0	2	50	1.12
10312149--10312173	7	3.6	7	100	0	50	16	0	60	24	1.36
10324811--10324836	2	13.0	2	100	0	52	50	0	0	50	1.00
10332278--10332378	30	3.3	30	84	1	121	49	1	13	34	1.54
10332316--10332370	15	3.7	15	75	0	56	45	1	18	34	1.60
10332362--10332546	96	1.9	96	82	0	226	50	5	12	31	1.64
10332690--10332764	6	12.0	6	72	13	53	28	0	1	70	0.95
10332782--10332950	49	3.2	49	70	25	146	31	2	2	63	1.22
10332914--10332988	6	12.0	6	72	13	53	28	0	1	70	0.95
10332909--10332990	23	3.5	23	80	15	89	30	0	1	68	0.98
10332621--10333082	224	2.1	224	95	2	833	32	3	1	62	1.21
10333022--10333088	25	2.6	25	79	13	66	32	0	0	67	0.91
10332616--10333080	113	4.1	113	94	4	814	32	3	1	62	1.21
10333005--10333153	67	2.2	67	79	5	149	32	2	1	64	1.13
10333114--10333188	25	2.9	25	76	7	71	32	1	1	65	1.09
10333077--10333188	55	2.1	54	83	11	140	30	2	1	65	1.17
10333189--10333267	30	2.6	31	78	9	74	56	1	0	41	1.07
10344491--10344542	2	26.5	2	78	3	52	48	5	46	0	1.26
10344976--10345088	54	2.1	54	90	3	174	38	15	14	31	1.88
10345274--10345314	22	2.0	21	86	13	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10345262--10345314	22	2.5	21	82	11	56	47	0	0	52	1.00
10345565--10345601	18	2.0	19	85	15	51	51	0	2	45	1.15
10353125--10353172	23	2.1	23	92	0	78	27	14	2	56	1.50
10360938--10360972	14	2.5	15	86	13	56	60	5	14	20	1.54
10373589--10373621	2	16.5	2	100	0	66	51	0	0	48	1.00
10384727--10384752	2	13.0	2	100	0	52	0	50	0	50	1.00
10393540--10393577	19	2.0	19	85	10	51	21	0	2	76	0.91
10393819--10393853	7	5.0	7	96	0	61	14	68	0	17	1.21
10393808--10393852	14	3.3	14	90	3	65	13	64	0	22	1.28
10411882--10411932	25	2.0	25	85	14	70	45	1	1	50	1.24
10412032--10412098	21	3.2	20	78	21	75	35	1	2	59	1.22
10412525--10412552	2	14.0	2	100	0	56	50	0	0	50	1.00
10420822--10420888	26	2.5	26	97	2	125	37	25	37	0	1.56
10444211--10444266	24	2.3	24	90	3	85	62	5	8	23	1.45
10450926--10450950	2	12.5	2	100	0	50	52	0	48	0	1.00
10453774--10453836	24	2.4	25	76	12	65	49	11	9	30	1.70
10453855--10453922	33	2.1	33	82	0	82	51	8	7	32	1.61
10469001--10469562	282	2.0	282	91	1	921	41	20	14	23	1.89
10473656--10473695	2	20.5	2	94	5	73	50	0	0	50	1.00
10504520--10504545	2	13.0	2	100	0	52	50	0	0	50	1.00
10508802--10508833	12	2.7	12	90	0	55	50	12	28	9	1.71
10518255--10518279	3	8.3	3	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10526156--10526182	2	13.5	2	100	0	54	48	0	0	51	1.00
10527252--10527308	6	9.5	6	92	0	78	19	43	31	5	1.73
10527252--10527308	12	4.8	12	91	0	87	19	43	31	5	1.73
10528486--10528517	17	1.9	17	93	6	57	53	0	0	46	1.00
10528668--10528744	21	3.7	21	82	6	77	58	0	1	40	1.06
10529184--10529222	21	1.9	20	84	5	51	10	5	5	79	1.04
10545139--10545214	30	2.5	30	83	8	93	35	1	2	60	1.19
10550686--10550724	12	3.3	12	85	3	53	17	25	25	30	1.97
10558213--10558252	17	2.3	18	86	8	64	50	0	35	15	1.44
10570884--10570929	20	2.2	21	84	3	58	21	21	2	54	1.56
10582823--10582847	2	12.5	2	100	0	50	48	0	0	52	1.00
10605411--10605588	89	2.0	89	100	0	356	40	11	19	29	1.86
10609447--10609526	20	3.8	21	73	20	60	52	1	0	46	1.08
10609664--10609704	21	2.0	21	95	4	75	63	2	0	34	1.08
10610511--10610566	21	2.7	19	79	15	58	41	5	21	32	1.76
10610991--10611114	44	2.8	44	73	9	119	35	11	20	32	1.88
10657826--10657850	13	1.9	13	100	0	50	24	24	20	32	1.98
10671591--10671663	35	2.1	35	81	0	83	38	26	5	30	1.79
10683127--10683158	16	2.0	16	93	0	55	46	6	6	40	1.54
10684704--10684885	57	3.2	55	72	9	152	23	18	28	29	1.98
10686192--10686242	14	3.5	14	82	17	68	74	1	0	23	0.92
10686220--10686294	29	2.5	31	75	12	86	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10688067--10688097	2	15.5	2	100	0	62	48	0	0	51	1.00
10688868--10688927	30	2.0	30	100	0	120	33	13	13	40	1.83
10694898--10694949	23	2.2	24	89	3	79	38	13	15	32	1.86
10696055--10696079	13	1.9	13	100	0	50	40	8	28	24	1.83
10699745--10699798	28	1.9	28	96	0	99	31	16	31	20	1.95
10700830--10700894	28	2.3	28	81	5	78	40	13	13	32	1.85
10700905--10700939	15	2.4	14	86	13	52	80	0	0	20	0.72
10708351--10708491	46	3.1	41	70	25	99	34	2	0	63	1.07
10708368--10708539	23	7.5	22	72	19	108	33	1	0	65	1.01
10708368--10708617	16	15.9	15	67	21	97	33	1	0	64	1.06
10708305--10708657	63	5.7	62	73	14	177	33	2	0	64	1.10
10708368--10708529	45	3.5	48	75	20	180	33	1	0	64	1.01
10708299--10708614	110	3.0	110	77	17	314	34	2	0	62	1.11
10708407--10708562	47	3.3	46	73	16	160	35	1	0	62	1.06
10708574--10708739	5	32.4	5	68	14	63	28	1	1	68	1.08
10708572--10708737	23	7.3	23	65	18	71	28	1	1	68	1.08
10708607--10708738	40	3.4	39	71	12	112	28	2	1	68	1.11
10708638--10708722	44	2.0	42	82	15	102	31	1	1	65	1.07
10708691--10708732	18	2.2	20	87	8	61	21	0	2	76	0.90
10708647--10708738	50	1.9	45	79	14	87	28	1	2	68	1.08
10708699--10708747	26	1.9	25	91	4	80	28	0	2	69	1.00
10708683--10708747	31	2.1	31	82	5	78	30	0	1	67	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10726961--10726999	19	2.0	20	90	5	62	71	0	0	28	0.86
10734885--10735360	165	2.9	163	80	3	544	34	21	29	14	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22

The End!