genome.fa.s6.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  6  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2189270--2189312	21	2.0	21	90	0	68	55	0	0	44	0.99
2190523--2190622	31	3.2	31	78	2	85	52	7	9	32	1.60
2193349--2193381	17	1.9	17	93	0	57	48	3	0	48	1.17
2200869--2200896	6	4.7	6	100	0	56	82	0	0	17	0.68
2200935--2200979	23	2.0	23	90	0	72	33	11	20	35	1.88
2201057--2201106	23	2.2	23	100	0	100	50	6	16	28	1.68
2201681--2201723	21	2.0	21	100	0	86	46	18	4	30	1.69
2210166--2211826	252	6.6	252	79	5	1532	47	5	12	34	1.65
2211160--2211605	243	1.8	243	81	6	553	48	5	12	33	1.63
2224723--2224752	2	15.0	2	100	0	60	50	0	0	50	1.00
2232144--2232169	9	2.9	9	100	0	52	23	7	34	34	1.83
2249639--2249679	21	2.0	21	85	9	57	24	2	2	70	1.11
2262133--2262214	19	4.3	19	67	11	60	52	2	1	43	1.22
2262204--2262391	92	2.1	88	79	11	204	55	2	2	38	1.28
2263387--2263439	26	2.1	25	85	3	70	37	16	20	24	1.93
2275030--2275056	2	13.5	2	100	0	54	48	0	51	0	1.00
2278907--2278940	15	2.3	15	89	0	50	58	0	2	38	1.13
2282357--2282392	17	2.1	17	89	0	54	22	22	41	13	1.89
2286068--2286119	25	2.1	25	92	0	86	34	1	28	34	1.69
2288019--2288060	21	2.0	21	85	0	57	21	23	7	47	1.75
2299085--2299116	3	10.7	3	100	0	64	65	0	0	34	0.93
2299256--2299301	20	2.3	20	84	0	56	10	19	6	63	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2306894--2306955	30	2.1	30	90	0	97	54	8	8	29	1.58
2312124--2312165	4	10.5	4	94	0	66	26	4	23	45	1.73
2324423--2324453	14	2.1	15	94	5	55	12	12	0	74	1.08
2324573--2324667	25	3.8	25	75	8	75	34	13	12	38	1.83
2324537--2324692	26	6.1	26	74	10	133	32	17	10	38	1.85
2324556--2324697	51	2.8	51	88	2	196	34	15	10	39	1.82
2330061--2330100	20	2.1	19	85	4	53	57	0	7	35	1.27
2331247--2331321	28	2.7	28	87	0	114	36	16	14	33	1.89
2333748--2333775	12	2.3	12	100	0	56	46	0	14	39	1.44
2336066--2336092	14	1.9	14	100	0	54	66	7	3	22	1.33
2342180--2342214	15	2.3	15	95	0	61	17	8	5	68	1.35
2342441--2342520	38	2.1	37	81	9	99	67	2	13	16	1.34
2343334--2343392	29	2.0	30	86	3	84	38	10	11	38	1.76
2343377--2343477	48	2.1	48	88	3	150	29	16	14	38	1.89
2346301--2346325	11	2.3	11	100	0	50	24	0	0	76	0.80
2354040--2354074	16	2.2	16	90	10	54	17	8	14	60	1.58
2354672--2354711	18	2.2	18	86	0	53	52	12	2	32	1.52
2363643--2363667	12	2.1	12	100	0	50	16	20	48	16	1.82
2368103--2368135	18	1.9	17	88	11	50	18	15	3	63	1.43
2368109--2368148	20	2.0	20	85	4	55	17	10	5	67	1.37
2373459--2373536	38	2.1	38	92	0	129	39	7	0	52	1.30
2373938--2374139	111	1.9	107	82	8	255	34	5	15	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2383793--2383823	3	10.3	3	100	0	62	64	0	0	35	0.94
2388237--2388294	23	2.5	23	72	8	55	55	0	5	39	1.22
2398108--2398133	2	13.0	2	100	0	52	50	0	0	50	1.00
2401473--2401517	21	2.1	23	88	12	69	28	0	8	62	1.25
2415032--2415086	20	2.8	20	80	5	58	34	10	16	38	1.84
2418855--2418899	14	3.1	14	84	6	63	66	4	26	2	1.22
2419795--2419824	14	2.1	14	93	0	51	36	0	0	63	0.95
2419899--2419963	31	2.2	29	83	5	76	44	3	0	52	1.16
2431150--2431204	16	3.4	16	73	12	58	67	0	0	32	0.91
2433520--2433761	51	4.7	51	74	6	177	21	33	38	7	1.82
2433520--2433804	102	2.8	101	77	7	229	21	32	37	8	1.84
2434077--2434121	15	2.9	16	83	9	58	20	35	37	6	1.79
2434348--2434404	15	3.9	14	78	14	62	31	7	35	26	1.83
2434348--2434404	29	1.9	30	85	3	80	31	7	35	26	1.83
2446121--2446175	28	1.9	29	82	10	69	43	0	1	54	1.10
2453588--2453619	7	4.6	7	100	0	64	12	0	0	87	0.54
2453588--2453627	21	1.9	21	85	10	55	15	0	2	82	0.77
2472055--2472108	27	2.0	27	96	0	99	18	9	14	57	1.64
2472437--2472473	2	18.5	2	100	0	74	48	0	0	51	1.00
2477201--2477247	23	2.0	23	91	0	76	65	8	6	19	1.41
2477722--2477757	16	2.2	17	90	5	56	36	2	0	61	1.11
2480672--2480703	2	16.0	2	100	0	64	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2493683--2493708	12	2.2	12	100	0	52	15	7	42	34	1.75
2497393--2497426	10	3.3	10	87	4	50	52	2	11	32	1.53
2503279--2503345	27	2.5	27	80	0	80	41	5	10	41	1.64
2503327--2503395	27	2.6	27	80	0	84	40	5	5	47	1.51
2509955--2510015	31	2.0	31	83	3	79	60	1	0	37	1.07
2522745--2522783	15	2.6	15	100	0	78	17	7	7	66	1.40
2524555--2524645	6	14.1	7	70	22	58	70	0	1	28	0.95
2524557--2524645	32	2.8	32	86	10	119	69	0	1	29	0.95
2524554--2524645	39	2.3	38	81	9	96	70	0	1	28	0.94
2525185--2525268	31	2.6	33	83	7	102	28	1	2	67	1.10
2527875--2527900	2	13.0	2	100	0	52	0	50	0	50	1.00
2531424--2531449	2	13.0	2	100	0	52	50	0	0	50	1.00
2538246--2538281	14	2.5	14	90	4	54	50	0	2	47	1.15
2540424--2540448	2	12.5	2	100	0	50	0	0	48	52	1.00
2540446--2540474	4	7.2	4	100	0	58	24	0	24	51	1.48
2547630--2547655	2	13.0	2	100	0	52	50	0	0	50	1.00
2547712--2547748	17	2.2	17	100	0	74	45	21	13	18	1.84
2555432--2555488	19	3.0	19	71	19	64	70	8	7	14	1.33
2555407--2555501	39	2.4	39	89	6	140	68	6	6	18	1.33
2556961--2556994	16	2.2	15	89	5	50	44	0	0	55	0.99
2557435--2557539	51	2.1	51	89	7	160	17	54	7	20	1.67
2567251--2567339	29	3.0	29	79	9	90	55	6	6	31	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2572220--2572262	22	1.9	22	85	4	59	9	9	13	67	1.42
2583093--2583175	41	2.0	41	90	0	130	50	10	12	26	1.72
2611213--2611244	2	16.0	2	100	0	64	50	0	0	50	1.00
2615645--2615684	2	20.0	2	84	0	53	47	2	50	0	1.14
2616053--2616102	21	2.4	21	83	6	57	8	16	30	46	1.75
2619045--2619082	10	3.7	10	89	3	58	39	0	0	60	0.97
2619008--2619092	24	3.7	24	67	19	63	50	0	0	49	1.00
2619624--2619706	29	2.8	30	78	10	89	38	8	9	43	1.68
2619738--2619787	26	1.9	26	84	8	66	30	14	10	46	1.77
2619674--2619989	163	1.9	164	82	4	388	34	12	9	44	1.73
2619682--2620028	80	4.3	80	74	8	272	34	12	10	43	1.75
2619767--2620183	218	1.9	219	79	9	467	34	11	10	43	1.76
2619962--2620070	56	1.9	56	81	9	132	34	10	10	44	1.72
2620039--2620088	26	1.9	26	83	0	64	36	18	8	38	1.80
2619917--2620166	138	1.8	138	82	8	321	34	11	10	43	1.75
2620053--2620211	80	2.0	79	82	11	191	33	13	11	41	1.81
2621564--2621615	26	2.0	26	96	0	95	44	9	15	30	1.78
2631868--2631896	10	2.9	10	100	0	58	48	0	0	51	1.00
2639597--2639650	17	3.4	16	72	23	51	46	1	1	50	1.23
2639597--2639650	8	6.8	8	74	21	51	46	1	1	50	1.23
2643455--2643481	3	9.0	3	100	0	54	33	0	0	66	0.92
2644209--2644245	2	20.0	2	84	15	53	54	0	0	45	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2653126--2653197	31	2.2	33	80	7	85	27	4	2	65	1.25
2654767--2655133	90	4.0	90	69	20	267	52	1	2	42	1.26
2654833--2654932	42	2.4	42	77	12	109	54	0	3	43	1.16
2654891--2654968	25	3.0	26	78	17	90	51	1	3	43	1.28
2654764--2654984	27	9.6	22	69	22	93	52	0	2	43	1.19
2654916--2654984	15	4.3	16	72	18	63	52	1	1	44	1.19
2654762--2655527	132	5.7	139	72	16	500	54	2	1	40	1.25
2654965--2655035	26	2.7	25	76	8	70	54	2	0	42	1.14
2655196--2655253	25	2.3	26	79	8	75	48	0	1	50	1.11
2655216--2655249	16	2.0	16	88	11	50	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22