genome.fa.s6.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  5  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1759253--1759290	18	2.1	18	85	9	51	0	28	10	60	1.30
1767055--1768170	252	4.5	247	79	7	1033	46	5	10	37	1.62
1767761--1768206	237	1.9	237	83	3	574	47	4	9	39	1.56
1778600--1778684	41	2.1	41	88	4	127	34	9	4	51	1.55
1780529--1780580	26	2.0	26	100	0	104	38	11	15	34	1.83
1793223--1793259	2	18.5	2	94	0	65	51	2	0	45	1.15
1799312--1799357	20	2.5	19	80	19	53	67	2	0	30	1.03
1799331--1799377	23	2.0	23	84	8	60	68	2	0	29	1.02
1799532--1799578	21	2.2	20	85	10	67	38	6	0	55	1.26
1799540--1799583	21	2.1	21	100	0	88	38	4	0	56	1.20
1799690--1799748	8	7.2	8	72	16	50	50	1	0	47	1.11
1808529--1808553	5	5.0	5	100	0	50	0	0	20	80	0.72
1839572--1839612	14	2.8	15	85	7	57	70	12	7	9	1.33
1840152--1840192	17	2.4	18	80	19	52	51	0	2	46	1.14
1840163--1840194	17	1.9	16	93	6	55	53	0	3	43	1.16
1846516--1846543	4	7.0	4	100	0	56	25	0	25	50	1.50
1862328--1862355	2	14.0	2	100	0	56	50	0	0	50	1.00
1867354--1867403	9	5.4	10	75	18	54	26	0	18	56	1.42
1867352--1867409	18	3.2	18	80	2	71	24	1	20	53	1.55
1867585--1867624	18	2.2	19	86	4	55	27	2	5	65	1.27
1868323--1868348	3	8.7	3	100	0	52	34	0	0	65	0.93
1882699--1882748	12	3.9	12	78	14	55	34	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1882700--1882745	13	3.5	13	83	16	67	32	0	0	67	0.91
1882700--1882753	27	2.0	27	100	0	108	33	0	0	66	0.92
1890047--1890080	12	2.8	12	83	16	52	32	23	0	44	1.54
1897350--1897382	2	16.5	2	93	0	57	45	0	3	51	1.16
1913708--1913738	14	2.2	14	94	0	53	61	0	19	19	1.35
1928520--1928549	14	2.1	15	93	6	53	46	0	6	46	1.29
1933086--1933130	23	2.0	23	82	8	56	33	26	6	33	1.83
1939447--1939478	2	16.0	2	93	0	55	46	0	3	50	1.17
1939619--1939678	31	2.0	29	83	6	75	61	0	0	38	0.96
1939633--1939708	27	2.7	27	78	9	82	65	0	0	34	0.93
1940428--1940466	20	2.0	20	85	14	55	56	0	0	43	0.99
1940687--1940741	15	3.7	15	87	4	67	34	3	27	34	1.74
1940959--1941248	15	19.1	14	66	25	94	31	2	1	65	1.11
1941074--1941154	32	2.5	31	82	9	92	27	0	1	71	0.93
1940891--1941118	112	2.0	112	90	2	359	33	4	0	61	1.22
1941168--1941251	41	2.0	42	84	13	109	30	0	0	69	0.89
1941080--1941256	78	2.3	79	80	16	224	29	0	1	68	1.00
1941181--1941247	7	9.4	7	78	3	62	25	0	0	74	0.82
1941075--1941250	14	11.8	15	66	20	70	28	0	1	69	0.99
1941402--1941464	27	2.4	25	76	20	67	53	0	0	46	1.00
1944358--1944534	92	1.9	93	86	3	250	24	12	17	45	1.83
1946767--1946820	24	2.4	23	84	9	67	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1946778--1946821	19	2.3	18	77	11	52	40	0	0	59	0.98
1946959--1947016	28	2.0	28	83	9	73	58	0	0	41	0.98
1947091--1947137	20	2.5	20	83	16	64	42	0	0	57	0.98
1950969--1951044	32	2.4	32	93	0	125	50	9	14	26	1.73
1958377--1958403	13	2.1	13	100	0	54	14	0	0	85	0.61
1958889--1958937	23	2.1	23	85	7	64	69	2	2	26	1.10
1960207--1960237	3	10.0	3	93	6	53	64	0	0	35	0.94
1965825--1965905	28	2.9	28	88	0	117	23	6	18	51	1.68
1966523--1966547	2	12.5	2	100	0	50	52	0	0	48	1.00
1969607--1969633	7	3.9	7	100	0	54	29	0	11	59	1.32
1986940--1986968	2	14.5	2	100	0	58	51	0	0	48	1.00
1987664--1987709	17	2.9	17	81	12	62	58	2	0	39	1.10
1987795--1987963	76	2.2	76	82	2	205	39	13	14	33	1.85
1989462--1989486	2	12.5	2	100	0	50	52	0	0	48	1.00
1992204--1992253	24	2.1	24	100	0	100	62	6	12	20	1.50
1992700--1992734	16	2.2	16	89	0	52	31	20	8	40	1.82
1995673--1995775	34	3.0	33	87	4	134	40	18	5	34	1.75
1998250--1998424	88	2.0	88	90	0	278	34	21	17	26	1.96
2000807--2000892	44	1.9	45	83	6	113	20	15	9	54	1.68
2000962--2001165	92	2.2	92	82	5	243	41	6	13	38	1.72
2004178--2004214	2	18.5	2	100	0	74	48	0	0	51	1.00
2007488--2007521	16	2.2	16	89	5	52	32	0	8	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2014142--2014200	30	2.0	30	86	0	82	37	22	1	38	1.64
2015125--2015176	15	3.7	14	75	14	54	59	0	0	40	0.97
2017935--2018075	74	1.9	74	92	0	237	31	19	15	32	1.93
2023264--2024909	828	2.0	829	88	0	2481	34	20	14	29	1.93
2026896--2026939	21	2.0	22	82	4	54	27	0	9	63	1.24
2030399--2030478	35	2.3	35	80	6	81	33	6	10	50	1.61
2038002--2038074	21	3.5	21	71	14	69	39	2	0	57	1.13
2037997--2038052	26	2.2	26	84	12	71	35	1	0	62	1.06
2038425--2038482	27	2.2	27	87	3	82	41	1	1	55	1.20
2038448--2038543	22	4.6	20	71	14	86	43	2	1	53	1.19
2038011--2038566	155	3.6	156	87	3	805	40	3	2	53	1.32
2038452--2038587	42	3.2	42	81	10	118	41	2	2	52	1.28
2038419--2038502	22	3.5	24	74	16	93	39	1	1	58	1.14
2038471--2038523	26	2.0	26	85	0	70	39	3	1	54	1.29
2038591--2038647	29	2.0	28	83	10	71	49	3	1	45	1.29
2038748--2038781	17	2.0	17	94	0	59	50	2	0	47	1.16
2039057--2039086	15	2.0	15	93	0	51	46	10	6	36	1.64
2039073--2039111	17	2.3	18	86	8	55	41	2	7	48	1.45
2041377--2041415	8	4.9	8	93	0	60	41	23	7	28	1.82
2041385--2041418	4	8.5	4	86	0	50	44	23	5	26	1.76
2042812--2042873	21	2.8	22	79	16	67	33	3	1	61	1.22
2042812--2042877	20	3.2	19	74	23	53	36	3	1	59	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2043306--2043338	9	3.7	9	84	15	50	24	0	0	75	0.80
2046509--2046537	2	14.5	2	100	0	58	51	0	0	48	1.00
2050406--2050440	2	17.5	2	100	0	70	48	0	0	51	1.00
2053171--2053205	18	1.9	18	88	0	52	77	2	20	0	0.90
2064229--2064277	21	2.3	22	76	16	57	40	4	0	55	1.19
2073978--2074007	2	15.0	2	100	0	60	50	0	0	50	1.00
2084239--2084302	15	4.3	15	73	11	51	32	23	4	39	1.75
2086531--2086575	15	2.9	15	76	3	54	26	6	28	37	1.82
2101805--2101850	19	2.4	19	82	13	51	10	13	10	65	1.48
2118817--2118852	18	2.0	18	89	10	56	0	16	2	80	0.83
2125117--2125161	23	2.0	23	100	0	90	40	6	13	40	1.71
2130222--2130409	102	1.8	102	89	2	297	39	20	17	22	1.92
2137180--2137219	21	1.9	21	90	10	64	27	0	5	67	1.11
2137432--2137497	15	4.4	16	81	11	77	46	24	0	28	1.52
2137430--2137497	30	2.3	30	82	12	86	45	25	0	29	1.54
2139305--2139351	21	2.2	22	88	3	69	40	2	0	57	1.11
2143406--2143441	15	2.4	15	90	9	56	33	8	0	58	1.28
2152528--2152595	31	2.2	31	94	0	118	55	11	13	19	1.67
2163856--2163883	14	2.0	14	100	0	56	21	35	28	14	1.92
2163909--2163966	27	2.1	27	100	0	116	25	34	29	10	1.89
2164017--2164058	14	2.9	14	83	16	59	30	4	35	28	1.78
2167433--2167462	16	1.9	15	93	6	51	23	0	10	66	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2177496--2177554	20	2.9	19	76	16	57	72	1	3	22	1.08
2183397--2183474	38	2.0	38	90	2	120	25	5	25	43	1.75
2183462--2183519	29	2.0	29	96	0	107	36	6	17	39	1.76
2184099--2184187	38	2.3	38	81	5	99	35	19	17	26	1.94
2184962--2185082	35	3.4	35	73	6	102	45	8	4	41	1.56
2185057--2185088	13	2.5	13	94	0	55	50	0	0	50	1.00
2187584--2187804	35	6.3	34	79	7	205	47	12	4	35	1.61
2187586--2187804	71	3.1	70	80	7	257	47	12	4	35	1.62
2187586--2187804	107	2.1	102	84	10	273	47	12	4	35	1.62
2189166--2189217	27	1.9	27	84	7	70	53	1	5	38	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22