genome.fa.s6.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  17  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7233140--7233168	5	6.0	5	96	4	51	82	0	17	0	0.66
7238433--7238467	17	1.9	19	88	11	56	51	5	42	0	1.25
7240253--7240305	24	2.3	24	90	6	83	64	5	0	30	1.17
7252447--7252484	15	2.5	15	87	8	51	28	7	28	34	1.85
7252706--7252787	32	2.4	34	80	8	96	29	3	0	67	1.08
7252806--7252843	19	2.0	19	85	10	51	31	0	0	68	0.90
7252811--7252883	32	2.2	33	88	7	105	30	1	1	67	1.08
7252823--7252896	32	2.4	31	84	13	98	28	1	1	68	1.05
7252982--7253011	11	2.7	11	100	0	60	20	0	26	53	1.46
7260748--7260838	47	1.9	48	88	2	139	39	7	15	37	1.76
7263231--7263257	6	4.5	6	100	0	54	33	0	37	29	1.58
7270568--7270614	25	1.9	25	87	12	71	36	0	0	63	0.94
7272742--7272773	15	2.0	17	88	11	50	18	9	0	71	1.12
7272706--7272880	95	1.8	95	90	2	280	23	12	3	60	1.47
7277432--7277590	28	5.7	28	74	5	117	47	5	4	43	1.45
7277445--7277567	56	2.2	57	85	2	160	45	5	4	44	1.46
7277466--7277581	55	2.1	56	81	1	144	48	6	5	39	1.52
7281181--7281243	31	2.1	29	82	11	74	71	3	9	15	1.25
7287567--7287615	20	2.5	20	96	0	89	40	8	12	38	1.72
7300184--7300239	21	2.7	21	75	8	53	42	7	0	50	1.30
7304564--7304594	2	16.0	2	93	6	55	48	0	0	51	1.00
7305529--7305579	25	2.0	26	85	11	70	60	1	0	37	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7305885--7305924	21	1.9	21	89	0	62	42	0	22	35	1.54
7307902--7307956	2	27.5	2	92	0	92	0	52	1	45	1.11
7308822--7308915	46	2.0	46	95	0	170	32	4	10	52	1.56
7309294--7309360	12	5.5	12	83	1	80	25	2	1	70	1.10
7310876--7310927	26	2.0	26	81	7	61	30	5	5	57	1.46
7310974--7311012	2	19.5	2	100	0	78	48	0	0	51	1.00
7317509--7317591	36	2.3	36	91	2	132	43	7	7	42	1.60
7318853--7318892	2	20.5	2	94	5	73	50	0	0	50	1.00
7322132--7322186	28	2.0	27	92	3	92	20	34	10	34	1.87
7322138--7322199	28	2.3	27	86	8	83	16	40	12	30	1.86
7322626--7322660	17	2.1	17	100	0	70	28	31	17	22	1.96
7336232--7336265	12	3.0	12	91	8	54	5	44	5	44	1.52
7336232--7336512	93	3.1	94	78	11	241	14	39	6	39	1.72
7337678--7337861	94	2.0	90	92	4	305	25	13	28	32	1.93
7354994--7355044	20	2.6	20	78	9	52	58	0	1	39	1.09
7355776--7355809	13	2.5	14	85	9	52	50	0	0	50	1.00
7360161--7360222	20	2.8	22	73	14	56	51	0	0	48	1.00
7365332--7365384	18	2.9	18	78	10	54	50	0	1	47	1.12
7365563--7365608	10	4.4	11	78	15	53	43	0	0	56	0.99
7376663--7376697	2	18.0	2	88	5	54	51	0	2	45	1.16
7394564--7394628	31	2.1	30	83	8	78	60	0	1	38	1.07
7399496--7399540	24	2.0	22	82	8	54	64	2	0	33	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7399506--7399544	20	2.0	20	89	0	60	66	0	0	33	0.92
7406109--7406148	20	2.0	20	85	9	55	22	20	15	42	1.88
7415214--7415255	22	2.0	21	86	9	59	38	14	4	42	1.66
7415247--7415296	18	2.7	19	84	9	68	66	2	0	32	1.03
7424691--7424731	20	2.0	20	86	9	57	68	17	2	12	1.31
7429199--7429223	2	12.5	2	100	0	50	52	0	48	0	1.00
7442128--7442175	22	2.2	21	85	3	60	66	0	2	31	1.03
7454588--7455373	416	1.9	412	85	3	1085	40	14	11	33	1.82
7455465--7455503	19	2.1	19	85	9	53	28	0	2	69	1.02
7457212--7457359	29	5.2	28	73	11	113	45	6	9	38	1.63
7457212--7457346	57	2.4	57	87	5	193	43	7	8	40	1.64
7458611--7458874	131	2.0	131	81	2	307	39	9	19	31	1.83
7461770--7461865	45	2.1	45	82	0	120	35	13	15	35	1.87
7475695--7475721	2	13.5	2	100	0	54	51	0	0	48	1.00
7490944--7491006	26	2.4	26	78	5	65	49	12	9	28	1.72
7504220--7504247	14	2.0	14	100	0	56	21	21	21	35	1.96
7508720--7508773	28	1.9	28	84	0	72	55	7	1	35	1.39
7512228--7512267	20	2.0	19	90	9	62	50	2	2	45	1.28
7512249--7512310	29	2.2	28	80	5	70	38	0	1	59	1.07
7512278--7512322	21	2.1	21	88	8	65	31	0	2	66	1.04
7513114--7513174	28	2.2	28	82	5	79	62	8	4	24	1.43
7513704--7513738	15	2.4	14	86	13	52	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7515381--7515459	21	3.8	22	81	6	76	70	0	0	29	0.87
7515494--7515578	33	2.6	34	83	3	102	65	0	3	30	1.09
7515380--7515572	82	2.3	83	77	16	222	66	0	2	31	1.05
7515395--7515459	15	4.2	15	72	16	53	75	0	0	24	0.81
7515790--7515833	15	2.9	15	86	0	52	29	22	11	36	1.89
7515809--7515844	15	2.4	15	85	0	54	38	27	2	30	1.71
7516949--7516987	8	4.6	8	81	12	51	38	0	0	61	0.96
7516949--7516983	13	2.7	13	86	0	52	40	0	0	60	0.97
7516956--7516991	18	1.9	19	94	5	65	38	0	0	61	0.96
7518265--7518296	7	4.6	7	100	0	64	12	15	28	43	1.83
7525454--7525490	2	18.5	2	100	0	74	51	0	0	48	1.00
7525548--7525582	18	1.9	18	88	11	54	62	8	28	0	1.24
7532094--7532150	26	2.1	29	83	9	75	40	3	1	54	1.28
7532146--7532221	34	2.2	35	81	9	93	35	2	0	61	1.10
7532585--7532627	21	2.0	20	86	8	59	72	16	4	6	1.24
7532591--7532635	21	2.2	20	84	4	54	77	11	6	4	1.09
7548031--7548057	2	13.5	2	100	0	54	48	0	0	51	1.00
7548293--7548381	25	3.4	25	74	17	83	38	3	1	57	1.23
7548289--7548375	27	3.2	27	73	15	81	40	3	1	55	1.24
7548293--7548382	26	3.5	25	75	15	85	37	3	1	57	1.22
7548410--7548537	67	1.9	66	86	1	175	32	7	5	54	1.52
7554542--7554592	14	3.5	14	75	15	50	27	0	3	68	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7554564--7554606	21	2.0	21	86	8	61	27	2	2	67	1.15
7558320--7558350	2	15.5	2	100	0	62	51	0	0	48	1.00
7616088--7616174	29	2.9	31	83	8	92	65	0	1	33	1.00
7616113--7616171	5	10.4	5	77	22	55	71	0	1	27	0.96
7616113--7616171	12	5.2	11	74	20	50	71	0	1	27	0.96
7616099--7616174	34	2.1	36	85	7	102	67	0	1	31	0.99
7616212--7616406	33	5.6	34	72	14	132	64	0	2	32	1.11
7616341--7616405	6	11.0	6	78	15	57	66	0	1	32	1.01
7616251--7616582	110	3.0	110	90	7	525	62	0	3	33	1.16
7616251--7616582	109	3.0	108	90	7	528	62	0	3	33	1.16
7616454--7616532	30	2.5	31	73	17	74	64	0	2	32	1.07
7616731--7616771	15	2.7	15	88	0	64	31	24	9	34	1.88
7623588--7623621	18	1.9	17	88	5	50	52	5	2	38	1.41
7646461--7646516	20	2.8	20	82	10	71	48	0	5	46	1.25
7684398--7684435	2	19.0	2	88	0	58	44	0	0	55	0.99
7689573--7689599	2	13.5	2	100	0	54	51	0	0	48	1.00
7690559--7690601	20	2.2	20	87	8	61	46	2	2	48	1.27
7700441--7700499	28	2.1	28	83	0	73	64	3	3	28	1.26
7713523--7713584	29	2.1	30	90	3	99	17	14	16	51	1.76
7723893--7723943	25	2.0	25	100	0	102	11	21	7	58	1.58
7729431--7729502	36	2.1	35	90	10	114	40	12	5	41	1.66
7742990--7743023	14	2.3	15	90	5	52	2	11	8	76	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7772188--7772220	2	16.5	2	100	0	66	51	0	0	48	1.00
7781792--7781826	17	2.1	17	89	5	54	65	5	11	17	1.43
7797332--7797389	17	3.3	17	79	9	71	41	1	1	55	1.20
7797364--7797406	10	4.1	10	80	11	50	41	0	2	55	1.12
7804259--7804318	19	3.2	19	100	0	120	15	20	20	45	1.86
7817480--7817523	21	2.0	22	86	4	63	70	6	0	22	1.11
7820522--7820641	21	5.3	22	81	16	122	25	0	18	55	1.48
7820531--7820638	42	2.3	46	81	16	143	24	0	19	55	1.49
7820524--7820652	25	5.5	23	82	15	133	24	1	18	55	1.52
7828661--7828746	42	2.0	42	93	0	145	34	19	22	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22