genome.fa.s6.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  3  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958905--958931	2	13.5	2	100	0	54	51	0	0	48	1.00
967228--967327	48	2.1	48	94	0	173	39	16	16	29	1.89
967611--967924	163	1.9	165	81	5	377	41	14	8	36	1.76
969037--969443	44	9.3	44	78	4	293	36	15	17	30	1.91
969063--969443	87	4.3	87	79	3	361	37	15	17	29	1.90
969060--969334	131	2.1	131	80	4	304	38	14	18	29	1.90
969063--969425	175	2.1	175	81	2	415	38	14	17	29	1.89
971007--971051	21	2.1	21	88	8	65	57	2	11	28	1.45
979144--979438	163	1.8	164	86	3	434	40	15	8	36	1.77
988284--988308	2	12.5	2	100	0	50	52	48	0	0	1.00
990699--990750	10	5.3	10	77	13	63	3	19	0	76	0.93
991038--991136	51	1.9	51	87	4	146	41	2	6	50	1.38
998099--998253	79	2.0	79	84	5	206	43	10	17	28	1.83
998516--998578	13	4.9	13	74	18	60	73	1	1	23	1.01
998557--998618	24	2.8	21	74	13	54	69	1	3	25	1.13
998613--998698	33	2.5	33	85	7	102	66	0	4	29	1.12
998503--998696	15	13.2	14	66	19	58	67	1	3	27	1.14
998650--998715	15	4.1	15	73	19	53	62	1	6	30	1.29
998917--998971	15	3.7	15	85	4	67	34	25	7	32	1.83
1000113--1000179	13	5.5	12	73	19	59	2	16	1	79	0.94
1000116--1000154	18	2.2	18	85	0	51	2	15	0	82	0.79
1000113--1000183	32	2.2	33	85	7	92	2	15	1	80	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1001099--1001123	2	12.5	2	100	0	50	48	0	0	52	1.00
1006563--1006609	2	23.5	2	82	0	58	46	2	0	51	1.13
1006698--1006754	26	2.2	26	100	0	114	33	3	3	59	1.31
1014519--1014974	28	16.8	27	70	11	184	44	15	5	34	1.71
1014519--1015056	55	9.9	55	72	8	282	43	15	6	34	1.71
1014502--1014974	83	5.8	83	75	9	380	43	15	6	35	1.72
1014519--1015057	27	19.8	27	72	8	288	43	15	6	34	1.72
1014857--1015010	82	1.9	82	81	0	191	46	17	8	27	1.77
1015254--1015301	19	2.5	20	80	13	55	35	8	12	43	1.73
1016801--1016860	9	6.7	9	75	7	50	16	43	1	38	1.58
1016815--1016905	27	3.4	27	82	0	101	16	41	4	37	1.68
1017179--1017310	27	5.0	27	73	3	99	35	7	16	40	1.77
1017179--1017304	54	2.4	52	78	5	135	35	7	16	39	1.78
1017220--1017322	54	1.9	54	87	0	152	34	4	16	43	1.69
1017220--1017322	27	3.8	27	72	0	80	34	4	16	43	1.69
1022074--1022232	27	6.1	26	69	10	101	37	8	9	44	1.67
1022074--1022232	53	3.1	52	77	10	157	37	8	9	44	1.67
1023231--1023272	14	3.1	14	79	3	50	4	4	11	78	1.06
1050527--1050585	31	1.9	31	86	3	84	37	11	10	40	1.76
1056731--1056819	25	3.6	25	63	6	65	38	5	17	38	1.74
1056720--1056816	48	2.0	48	100	0	194	43	4	19	32	1.70
1057398--1057422	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071552--1071624	31	2.3	31	90	4	110	19	28	10	41	1.85
1076761--1076854	27	3.4	28	76	7	86	43	10	5	40	1.62
1076776--1076848	28	2.6	28	80	2	76	43	10	4	41	1.59
1076724--1076876	55	2.8	55	78	4	148	45	11	4	38	1.62
1076804--1076875	27	2.6	26	76	6	63	45	9	2	41	1.51
1080551--1080580	15	2.0	15	93	0	51	26	0	3	70	1.03
1084255--1084290	16	2.2	16	90	0	54	47	0	0	52	1.00
1084882--1085022	74	1.9	75	86	4	205	41	4	5	48	1.46
1085004--1085043	21	1.9	21	84	0	53	47	2	2	47	1.29
1085127--1085192	21	3.1	21	76	10	64	43	0	1	54	1.09
1085112--1085192	20	4.2	20	75	21	77	44	0	1	54	1.08
1085108--1085183	20	4.0	20	74	23	83	46	0	1	52	1.08
1087483--1087594	56	2.0	56	91	0	179	45	10	25	17	1.81
1100108--1100224	59	2.0	59	83	6	148	40	1	1	56	1.20
1102520--1102588	14	4.7	14	72	21	52	65	0	1	33	1.02
1104260--1104284	3	8.3	3	100	0	50	36	0	0	64	0.94
1113739--1113818	41	2.0	41	89	0	124	21	10	12	56	1.65
1114562--1114597	15	2.4	15	95	0	63	30	8	27	33	1.86
1114738--1114925	56	3.3	59	75	16	205	37	2	0	60	1.13
1114824--1114887	22	2.8	24	79	18	82	34	0	0	65	0.93
1114824--1114897	22	3.4	21	80	17	73	33	0	0	66	0.92
1114760--1114975	15	15.4	14	65	25	61	33	2	0	63	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114830--1114898	21	3.1	24	72	21	69	36	0	0	63	0.94
1114803--1114975	27	6.2	26	72	18	127	33	1	0	64	1.08
1114747--1114975	113	2.0	114	93	4	392	34	2	0	63	1.10
1114850--1114972	9	14.1	9	63	24	50	34	1	0	63	1.10
1114929--1115014	33	2.6	33	83	5	102	29	2	0	68	1.02
1115003--1115136	31	4.6	30	80	12	138	29	2	0	67	1.08
1115055--1115133	5	13.4	5	76	23	50	27	2	0	69	1.01
1114789--1115147	186	1.9	182	80	10	408	32	2	0	64	1.12
1163091--1163147	27	2.2	26	84	6	71	42	1	10	45	1.49
1162975--1163139	35	4.7	35	80	8	147	40	4	9	45	1.56
1162973--1163152	71	2.5	71	78	7	186	38	5	11	45	1.63
1167384--1167444	30	2.0	30	90	0	95	36	18	6	39	1.76
1175507--1175753	126	2.0	125	90	0	386	24	34	18	22	1.96
1179416--1179526	47	2.4	47	86	6	154	34	6	9	49	1.61
1182679--1182715	12	3.1	12	92	0	65	24	10	24	40	1.87
1183067--1183120	3	17.7	3	96	3	99	31	0	1	66	1.02
1192870--1192903	2	17.0	2	100	0	68	50	0	0	50	1.00
1193283--1193317	2	17.5	2	100	0	70	48	0	0	51	1.00
1197329--1197416	26	3.2	31	85	14	99	12	13	6	67	1.42
1197338--1197418	26	3.2	26	98	1	155	12	13	7	66	1.43
1225903--1225936	16	2.1	17	88	5	52	29	5	0	64	1.17
1226732--1226804	4	18.8	4	82	16	82	49	19	0	31	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1226736--1226820	14	6.2	14	82	8	95	49	15	0	35	1.45
1226733--1226822	48	1.9	45	90	4	135	48	15	0	35	1.45
1226730--1226824	8	11.6	8	79	12	77	49	14	0	35	1.44
1226732--1226816	12	6.9	12	77	10	73	49	16	0	34	1.46
1233232--1233260	2	14.5	2	100	0	58	48	0	0	51	1.00
1234168--1234212	22	2.0	22	82	0	54	6	31	28	33	1.83
1237536--1237621	44	2.0	44	95	0	154	43	6	30	19	1.78
1241679--1241713	18	1.9	18	100	0	70	22	11	17	48	1.79
1245242--1245320	25	3.2	26	91	5	128	11	12	8	67	1.43
1249804--1249846	16	2.5	17	81	7	52	2	9	30	58	1.42
1252436--1252473	2	19.0	2	88	0	58	47	2	2	47	1.30
1254210--1254240	2	15.5	2	93	0	53	48	3	0	48	1.17
1261883--1262412	213	2.5	212	81	4	579	35	10	4	49	1.59
1272627--1272665	18	2.2	18	90	0	60	58	5	0	35	1.20
1273060--1273099	12	3.5	12	86	6	57	82	0	2	15	0.77
1273059--1273117	17	3.5	15	82	15	55	81	0	6	11	0.87
1273077--1273110	18	1.9	18	88	5	52	82	0	5	11	0.83
1274489--1274517	13	2.2	13	100	0	58	48	6	0	44	1.29
1274472--1274514	13	3.1	14	83	6	52	39	6	2	51	1.42
1276499--1276523	5	5.0	5	100	0	50	20	0	0	80	0.72
1285009--1285053	23	1.9	24	82	13	58	71	2	6	20	1.20
1309251--1309341	47	1.9	47	93	0	155	46	21	1	30	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1309912--1309989	21	3.7	21	79	6	95	39	12	24	23	1.89
1317350--1317426	39	2.0	39	84	5	102	31	19	6	42	1.76
1317392--1317492	52	1.9	52	84	4	132	30	15	10	42	1.82
1317757--1317794	6	6.2	6	87	6	58	18	2	0	78	0.86
1317939--1317981	12	3.4	12	83	6	50	72	0	9	18	1.11
1318982--1319041	26	2.3	26	77	5	68	48	3	1	46	1.28
1324423--1324461	19	2.0	20	90	5	62	12	23	0	64	1.28
1337789--1337828	15	2.7	15	88	0	62	52	5	5	37	1.45
1337984--1338106	29	4.3	28	67	18	74	31	1	0	66	1.01
1338044--1338119	28	2.5	32	77	20	99	27	1	0	71	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22