genome.fa.s6.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  7  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2655208--2655259	25	2.2	25	90	10	83	50	0	0	50	1.00
2655110--2655364	142	1.9	136	89	8	401	58	2	1	38	1.21
2655259--2655292	5	6.8	5	100	0	68	82	0	0	17	0.67
2655390--2655432	17	2.5	18	81	7	54	53	0	0	46	1.00
2655359--2655429	28	2.5	28	76	15	65	57	1	0	40	1.07
2655279--2655453	91	1.9	95	85	5	250	54	3	1	40	1.27
2655469--2655524	27	2.2	25	87	6	76	53	5	0	41	1.24
2655477--2655530	27	2.1	27	83	10	69	57	3	0	38	1.17
2655483--2655537	24	2.1	27	80	9	62	60	3	0	36	1.15
2670702--2670765	20	3.0	20	74	12	56	56	1	1	40	1.18
2670754--2670795	18	2.3	18	84	8	50	35	21	0	42	1.53
2671241--2671297	19	2.8	19	75	19	62	40	1	0	57	1.09
2675407--2675444	3	12.7	3	100	0	76	31	0	0	68	0.90
2678351--2678380	2	15.0	2	100	0	60	0	50	0	50	1.00
2680835--2680911	39	2.0	38	87	7	111	25	11	20	41	1.86
2682511--2682543	16	2.1	17	88	11	52	87	0	12	0	0.53
2700040--2700073	11	3.1	11	86	0	50	5	11	0	82	0.83
2714912--2714938	5	5.4	5	100	0	54	18	0	44	37	1.50
2715081--2715208	65	2.0	65	90	0	202	42	10	9	38	1.71
2716920--2716967	25	1.9	25	82	0	60	45	12	10	31	1.76
2717753--2717802	26	1.9	26	87	0	73	40	10	12	38	1.76
2720780--2720810	14	2.1	14	94	5	53	74	0	25	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2721051--2721122	35	2.1	35	91	0	117	23	25	12	38	1.90
2722353--2722385	13	2.5	13	95	0	57	42	0	3	54	1.15
2734242--2734274	2	16.5	2	100	0	66	51	0	0	48	1.00
2734348--2734389	20	2.2	19	87	8	59	57	23	4	14	1.56
2737184--2737208	7	3.6	7	100	0	50	40	32	16	12	1.84
2750461--2750525	33	2.0	31	88	5	94	26	1	0	72	0.94
2750411--2750528	54	2.2	55	81	18	153	30	1	0	67	1.00
2751244--2751276	2	16.5	2	100	0	66	51	0	0	48	1.00
2755732--2755759	14	2.0	14	100	0	56	42	7	14	35	1.73
2757698--2757722	13	1.9	13	100	0	50	44	0	8	48	1.32
2760153--2760219	31	2.2	31	100	0	134	26	5	8	58	1.52
2760377--2760410	14	2.4	14	90	0	50	32	5	8	52	1.56
2760326--2760474	78	1.9	78	87	0	217	24	7	15	52	1.68
2760888--2760935	17	2.7	18	83	3	53	70	2	25	2	1.09
2761087--2761116	16	1.9	15	93	6	51	30	0	0	70	0.88
2768496--2768531	2	18.0	2	88	0	54	50	5	0	44	1.25
2768490--2768531	14	3.0	14	92	0	66	50	9	0	40	1.35
2768477--2768522	18	2.6	18	89	0	65	50	17	0	32	1.47
2771051--2771165	35	3.3	35	79	7	101	25	13	16	45	1.83
2773867--2773897	4	7.8	4	100	0	62	0	25	0	74	0.82
2774984--2775008	7	3.6	7	100	0	50	88	0	0	12	0.53
2781459--2781505	16	2.9	16	83	0	67	38	8	4	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2782572--2782609	20	1.9	20	84	10	51	68	0	13	18	1.21
2785952--2785992	2	20.5	2	94	0	73	51	2	0	46	1.14
2785956--2785997	10	4.2	10	93	0	57	50	7	0	42	1.30
2787596--2787639	22	2.0	22	86	0	61	50	2	0	47	1.13
2787616--2787664	25	2.0	25	91	0	80	42	2	2	53	1.24
2787646--2787679	15	2.3	15	94	0	59	41	0	0	58	0.98
2787775--2787863	16	5.3	16	68	17	56	49	3	2	44	1.31
2789030--2789091	19	3.2	20	80	15	58	59	1	1	37	1.17
2789048--2789098	20	2.7	19	82	8	61	58	0	1	39	1.09
2794883--2794916	12	2.8	12	86	0	50	52	5	38	2	1.41
2809970--2810029	28	2.1	29	84	3	77	43	10	6	40	1.64
2810109--2810185	27	2.8	28	84	4	102	42	11	3	41	1.59
2810246--2810285	21	1.9	21	89	0	62	85	2	5	7	0.83
2810246--2810292	10	4.6	10	84	5	58	82	2	4	10	0.88
2810302--2810576	135	2.0	136	87	4	398	57	3	5	33	1.38
2810514--2810615	8	12.8	8	68	20	54	54	2	0	42	1.15
2810535--2810617	11	7.6	11	74	14	66	54	3	0	42	1.18
2810584--2810622	13	3.2	13	85	10	55	51	0	0	48	1.00
2810806--2810843	15	2.6	15	83	4	51	26	0	0	73	0.83
2811422--2811464	17	2.6	16	89	7	68	30	2	0	67	1.03
2816673--2816698	4	6.5	4	100	0	52	0	0	73	26	0.84
2829146--2829219	37	2.0	37	84	5	96	18	33	21	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2828680--2829684	333	3.0	338	87	6	1420	26	26	13	33	1.93
2830149--2830210	24	2.6	24	97	0	115	9	22	37	30	1.86
2832376--2832427	23	2.2	24	82	6	61	57	15	23	3	1.54
2832732--2832780	18	2.7	18	83	0	62	26	34	18	20	1.95
2835854--2835897	2	22.0	2	100	0	88	50	0	0	50	1.00
2840678--2840711	16	2.1	16	94	0	59	88	2	0	8	0.62
2842858--2842921	24	2.7	25	83	11	73	42	1	1	54	1.19
2849152--2849246	41	2.3	41	100	0	190	44	21	13	21	1.86
2850924--2850952	4	7.2	4	100	0	58	24	0	0	75	0.80
2852943--2852978	2	18.0	2	88	0	54	50	0	5	44	1.25
2855131--2855157	2	13.5	2	100	0	54	51	0	0	48	1.00
2860174--2860245	27	2.6	26	78	8	63	33	2	1	62	1.18
2869268--2869306	15	2.5	15	84	15	53	2	23	0	74	0.94
2870428--2870457	15	2.0	15	100	0	60	26	13	13	46	1.80
2875381--2875934	192	2.8	197	85	6	744	33	16	16	33	1.91
2884551--2884575	13	1.9	13	100	0	50	8	12	0	80	0.92
2896293--2896329	18	2.1	18	90	5	58	59	0	5	35	1.20
2898855--2898892	17	2.2	18	85	4	51	28	18	0	52	1.45
2898922--2898990	15	4.7	15	68	13	54	39	20	1	39	1.61
2917225--2917274	14	3.3	15	76	18	59	58	0	0	42	0.98
2917226--2917295	16	4.5	16	77	8	65	60	0	0	40	0.97
2917239--2917310	17	4.0	17	78	12	65	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2921136--2921169	12	2.8	12	86	0	50	32	0	17	50	1.47
2921326--2921495	89	1.9	89	81	1	205	35	7	20	37	1.80
2926968--2927041	30	2.6	29	82	4	87	41	0	0	58	0.98
2927310--2927396	29	3.0	28	86	8	120	60	2	1	35	1.17
2927298--2927394	30	3.3	29	83	9	124	55	2	2	40	1.23
2933906--2933980	37	2.0	37	94	0	132	30	12	14	42	1.82
2947385--2947415	2	15.5	2	93	0	53	48	48	3	0	1.17
2961506--2961555	26	1.9	27	84	8	68	30	20	10	40	1.85
2961412--2961568	79	2.0	82	79	6	178	31	14	11	42	1.81
2965593--2965653	30	2.0	30	87	0	86	31	24	24	19	1.98
2975002--2975056	27	2.0	27	86	6	76	45	5	3	45	1.44
2975286--2975478	57	3.0	62	77	16	200	44	5	16	33	1.71
2986836--2986871	11	3.4	11	88	7	56	0	61	0	38	0.96
2995035--2995072	19	2.0	19	85	10	51	47	0	2	50	1.15
2996236--2996276	21	2.0	21	90	4	66	43	0	2	53	1.13
3032458--3032528	23	3.2	23	63	25	62	30	16	4	47	1.66
3032456--3032544	43	2.1	43	100	0	178	31	16	6	44	1.74
3037035--3037080	15	3.1	14	87	12	65	71	0	2	26	0.97
3037033--3037083	16	3.3	16	83	10	70	70	0	1	27	0.98
3037037--3037083	7	6.3	7	83	11	58	72	0	2	25	0.96
3037874--3037920	14	3.6	14	72	21	57	68	0	4	27	1.08
3037873--3037932	24	2.5	24	100	0	120	66	0	3	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3049859--3050000	72	2.0	72	94	0	248	30	30	9	28	1.89
3053654--3053688	16	2.1	17	89	5	54	45	0	0	54	0.99
3057361--3057391	3	10.3	3	100	0	62	32	0	0	67	0.91
3060504--3060531	2	14.0	2	100	0	56	50	0	0	50	1.00
3061617--3061652	2	18.0	2	100	0	72	50	0	0	50	1.00
3062002--3062073	21	3.5	22	72	12	80	36	27	2	33	1.72
3062023--3062092	20	3.5	20	71	11	61	37	31	1	30	1.66
3062001--3062093	41	2.3	41	94	3	161	35	30	2	32	1.70
3071361--3071395	12	2.9	12	86	0	52	42	0	2	54	1.15
3071704--3071763	22	2.6	22	81	5	75	23	1	0	75	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22