genome.fa.s6.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  15  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6233507--6233584	29	2.7	29	76	9	77	56	1	6	35	1.33
6239305--6239352	2	24.0	2	86	0	69	0	43	4	52	1.20
6243914--6243989	24	3.2	24	78	0	98	23	42	19	14	1.88
6248133--6248329	33	6.1	33	68	23	109	66	1	3	29	1.13
6248199--6248270	30	2.6	25	70	21	54	65	0	4	30	1.12
6248139--6248291	55	2.8	55	75	9	129	67	0	3	28	1.10
6254684--6254725	21	2.0	22	85	4	59	71	0	0	28	0.86
6254703--6254741	17	2.3	17	86	0	51	58	2	0	38	1.12
6258313--6258351	20	1.9	20	89	5	60	38	12	15	33	1.85
6265763--6265827	33	1.9	34	84	9	89	50	0	3	46	1.17
6268322--6268351	2	15.0	2	100	0	60	50	0	0	50	1.00
6270369--6270426	25	2.4	24	81	18	75	62	0	0	37	0.96
6270382--6270422	19	2.1	20	86	4	57	63	0	0	36	0.95
6272501--6272538	2	19.0	2	100	0	76	50	0	0	50	1.00
6273615--6273680	33	2.0	33	96	0	123	42	16	16	24	1.88
6274643--6274683	2	20.5	2	94	0	73	53	0	0	46	1.00
6287861--6287908	21	2.3	21	82	10	55	58	0	0	41	0.98
6287970--6288014	18	2.5	19	86	13	69	24	0	0	75	0.80
6296412--6296567	74	2.1	75	82	8	194	40	3	7	48	1.48
6296599--6296640	19	2.3	19	79	4	50	45	0	4	50	1.23
6296634--6296717	35	2.4	35	82	7	100	44	1	3	51	1.26
6299509--6299552	21	2.0	22	82	4	54	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6300302--6300359	27	2.1	27	93	0	98	12	27	34	25	1.91
6326458--6326511	17	3.2	17	79	10	58	75	1	11	11	1.11
6326482--6326529	20	2.5	19	80	13	53	75	8	6	10	1.20
6326532--6326582	14	3.5	14	84	10	59	74	1	23	0	0.92
6326531--6326582	24	2.3	23	84	12	65	73	1	25	0	0.94
6326616--6326654	19	2.1	19	90	0	60	76	0	20	2	0.90
6328393--6328419	6	4.5	6	100	0	54	81	0	18	0	0.69
6329913--6329941	2	14.5	2	100	0	58	51	48	0	0	1.00
6330373--6330403	13	2.3	14	94	5	55	38	29	9	22	1.86
6333296--6333342	18	2.5	19	79	6	51	23	21	6	48	1.72
6338446--6338502	29	2.0	27	80	12	62	40	3	3	52	1.35
6338743--6338780	20	1.9	20	89	10	60	39	0	5	55	1.23
6351106--6351135	15	2.0	15	100	0	60	53	40	0	6	1.27
6354316--6354709	209	1.9	214	88	4	600	34	16	16	32	1.92
6355408--6355435	14	2.0	14	100	0	56	14	42	28	14	1.84
6357227--6357262	17	2.1	17	94	0	63	58	13	5	22	1.56
6360598--6360626	3	9.7	3	100	0	58	0	34	0	65	0.93
6381185--6381224	20	2.0	20	95	0	71	22	12	10	55	1.67
6384089--6384134	24	1.9	24	86	0	65	28	21	6	43	1.77
6408216--6408265	25	2.0	25	84	7	66	38	2	2	58	1.21
6414066--6414130	25	2.6	25	90	0	94	46	3	20	30	1.66
6418027--6418061	18	1.9	18	88	0	52	28	2	20	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6418070--6418125	18	3.1	18	77	10	69	33	5	21	39	1.76
6418383--6419098	362	2.0	362	84	4	944	35	10	24	29	1.89
6427912--6427947	2	18.0	2	100	0	72	0	50	0	50	1.00
6429248--6429275	2	14.0	2	100	0	56	0	0	50	50	1.00
6440743--6440786	2	22.0	2	100	0	88	50	0	0	50	1.00
6441316--6441343	2	14.0	2	100	0	56	50	0	0	50	1.00
6445784--6445840	19	3.2	18	78	7	62	40	3	3	52	1.35
6446270--6446304	2	17.5	2	93	0	61	51	2	0	45	1.16
6457250--6457274	4	6.2	4	100	0	50	76	24	0	0	0.80
6474316--6474348	15	2.2	15	100	0	66	54	15	6	24	1.63
6487529--6487588	21	2.9	21	82	7	77	25	16	18	40	1.91
6494100--6494143	16	2.8	16	86	6	54	59	6	0	34	1.24
6500953--6501016	31	2.1	29	85	5	83	51	3	0	45	1.17
6531135--6531192	28	2.1	28	96	0	107	50	1	25	22	1.59
6533890--6534461	284	2.0	284	93	0	982	34	16	17	31	1.92
6535401--6536370	252	3.9	250	81	4	1078	49	5	9	35	1.59
6536064--6536093	14	2.1	15	93	6	53	43	0	6	50	1.28
6536296--6536888	203	3.0	202	85	4	765	44	4	6	44	1.51
6551289--6551318	1	30.0	1	100	0	60	0	0	100	0	0.00
6554944--6554998	28	1.9	29	85	3	76	61	0	0	38	0.96
6560496--6560521	2	13.0	2	100	0	52	50	0	0	50	1.00
6573202--6573277	3	25.3	3	97	0	143	31	0	1	67	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6573933--6573988	27	2.1	27	83	12	71	60	0	0	39	0.97
6573950--6573999	23	2.2	23	86	13	68	60	0	0	40	0.97
6584066--6584105	20	2.0	21	85	5	55	60	7	0	32	1.25
6593023--6593101	38	2.0	41	90	7	128	25	24	13	36	1.92
6601976--6602037	31	2.0	31	93	0	106	54	25	16	3	1.56
6602777--6602827	11	4.5	11	78	9	50	58	0	39	1	1.09
6613959--6614016	28	2.1	28	96	0	107	12	24	20	43	1.86
6616935--6616972	3	12.7	3	88	0	58	39	34	26	0	1.57
6616935--6616978	9	4.9	9	91	0	61	43	34	22	0	1.54
6618011--6618059	24	2.0	24	84	0	62	8	14	4	73	1.21
6621714--6621839	63	2.0	63	98	0	243	35	12	18	33	1.88
6629296--6629335	2	20.0	2	100	0	80	50	0	0	50	1.00
6637448--6637481	13	2.6	13	100	0	68	41	0	0	58	0.98
6642663--6642711	19	2.6	19	100	0	98	8	16	18	57	1.63
6652196--6652249	28	1.9	28	85	7	74	62	0	0	37	0.95
6656355--6656402	3	17.3	3	79	16	59	68	0	0	31	0.90
6656356--6656401	8	6.0	8	85	10	60	71	0	0	28	0.86
6656355--6656402	11	4.6	11	75	15	57	68	0	0	31	0.90
6656356--6656408	19	2.8	19	85	0	70	67	0	0	32	0.91
6676146--6676188	23	1.9	22	90	4	68	46	9	2	41	1.48
6677619--6677722	27	3.9	27	93	0	163	32	12	38	16	1.86
6677803--6677834	3	10.7	3	93	0	55	62	0	37	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6686489--6686524	2	18.0	2	100	0	72	50	0	0	50	1.00
6693227--6693271	18	2.5	18	85	7	56	33	4	0	62	1.15
6700240--6700275	7	5.1	7	100	0	72	41	0	44	13	1.44
6701574--6701620	24	1.9	24	82	4	58	57	0	0	42	0.98
6714376--6714410	2	17.5	2	100	0	70	48	0	51	0	1.00
6715324--6715348	7	3.6	7	100	0	50	88	0	0	12	0.53
6729327--6729365	20	1.9	21	85	15	55	25	0	2	71	0.98
6731037--6731093	3	19.3	3	92	3	98	63	0	36	0	0.95
6731166--6731288	62	2.0	60	90	6	194	34	17	12	34	1.87
6737818--6737853	2	18.0	2	100	0	72	50	0	0	50	1.00
6741695--6741732	12	3.2	12	85	3	51	60	0	10	28	1.30
6741695--6741746	24	2.2	24	83	10	63	63	0	7	28	1.22
6741704--6741746	12	3.5	12	80	3	50	65	0	4	30	1.13
6749792--6749863	36	2.0	36	88	0	108	38	18	9	33	1.83
6751652--6751723	22	3.3	22	75	7	67	23	9	19	47	1.79
6751735--6751783	23	2.1	23	84	0	62	32	26	12	28	1.92
6751752--6751815	23	2.8	23	80	0	74	34	20	15	29	1.94
6752381--6752420	21	1.9	21	89	0	62	47	0	2	50	1.14
6754557--6754595	21	1.9	20	89	5	60	28	5	0	66	1.12
6756246--6756277	15	2.1	16	88	11	50	50	0	0	50	1.00
6756220--6756271	27	1.9	27	84	7	70	36	0	0	63	0.95
6756588--6756618	16	2.0	16	93	6	55	35	0	6	58	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6756777--6756823	22	2.2	22	81	11	53	44	2	14	38	1.58
6758849--6758881	2	16.5	2	100	0	66	51	0	0	48	1.00
6761412--6761517	28	3.9	27	77	1	95	48	2	4	44	1.38
6766242--6766309	33	2.1	33	83	5	84	36	5	17	39	1.74
6768740--6768787	26	1.9	25	84	16	64	43	12	2	41	1.54
6771265--6771308	21	2.1	21	82	0	52	31	36	15	15	1.90
6771277--6771328	21	2.5	21	93	0	86	21	42	17	19	1.89
6773797--6773837	20	2.0	20	85	0	55	41	0	0	58	0.98
6782938--6783006	33	2.1	33	94	0	120	18	26	17	37	1.93
6785846--6786007	82	2.0	80	93	2	279	16	20	22	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22