genome.fa.s6.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  20  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8846287--8846319	2	17.0	2	87	6	50	51	0	0	48	1.00
8854550--8854593	15	2.6	17	83	16	56	31	2	2	63	1.19
8854597--8854651	28	2.0	28	81	0	65	50	0	9	40	1.34
8854998--8855038	22	1.9	21	90	5	64	78	0	2	19	0.87
8854982--8855036	13	4.0	14	78	21	55	72	0	3	23	1.00
8866721--8866748	2	14.0	2	100	0	56	50	0	0	50	1.00
8871756--8871806	19	2.5	20	78	12	59	64	13	1	19	1.37
8879878--8879914	17	2.2	17	95	0	65	40	0	16	43	1.48
8879490--8880288	404	2.0	406	96	2	1500	36	8	16	37	1.80
8880388--8880421	16	2.1	17	88	5	52	47	5	5	41	1.52
8883038--8883227	93	2.0	93	92	0	317	38	21	12	27	1.89
8893215--8893268	22	2.6	21	81	18	69	53	1	0	44	1.11
8893356--8893420	20	3.2	19	74	16	67	56	3	0	40	1.15
8893412--8893459	25	1.9	25	100	0	96	45	0	0	54	0.99
8893428--8893463	15	2.3	16	95	4	65	47	0	0	52	1.00
8896597--8896644	17	2.8	16	80	20	53	45	0	4	50	1.21
8900914--8901042	65	2.0	65	92	0	213	33	17	11	37	1.85
8923831--8923884	26	2.0	26	82	3	63	38	3	0	57	1.17
8932534--8932570	2	18.5	2	94	0	65	54	0	45	0	1.00
8950937--8950968	17	1.9	17	93	6	57	46	0	3	50	1.17
8958781--8958826	23	2.0	23	95	0	83	30	2	41	26	1.68
8958804--8958887	41	2.0	41	93	0	141	39	1	40	19	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8958944--8959135	61	3.2	61	97	0	359	36	6	30	26	1.82
8959470--8959501	2	16.0	2	93	0	55	46	3	0	50	1.17
8960256--8960455	52	3.8	52	84	2	231	27	21	17	34	1.96
8960286--8960463	52	3.4	52	86	3	250	26	22	15	35	1.93
8965446--8965474	2	14.5	2	100	0	58	48	0	0	51	1.00
8968111--8968151	20	2.0	20	95	0	73	17	4	26	51	1.65
8975310--8975342	14	2.3	15	85	15	52	72	0	9	18	1.10
8975316--8975341	7	3.7	7	100	0	52	73	0	11	15	1.11
8983599--8983637	21	1.9	21	89	5	62	28	7	30	33	1.85
8990476--8990515	19	2.1	19	85	4	53	47	2	2	47	1.29
9004188--9004221	5	6.8	5	96	0	50	32	41	20	5	1.76
9016106--9016140	12	2.7	13	91	8	54	71	8	0	20	1.11
9021560--9021611	27	2.0	27	85	10	74	28	1	11	57	1.44
9025189--9025223	12	3.0	12	87	4	54	71	0	28	0	0.86
9028788--9028828	18	2.2	19	87	12	59	2	31	7	58	1.38
9034781--9034810	2	15.0	2	100	0	60	0	50	0	50	1.00
9043243--9043275	13	2.6	13	90	4	50	75	3	21	0	0.93
9066879--9066919	16	2.5	17	85	14	52	12	34	2	51	1.52
9072106--9072144	20	2.0	20	89	0	60	25	10	2	61	1.41
9072777--9072805	2	14.5	2	100	0	58	48	0	0	51	1.00
9086444--9086503	21	2.9	21	82	0	75	43	21	3	31	1.69
9097789--9097841	22	2.4	21	84	6	61	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9098725--9098783	26	2.3	25	79	2	64	25	6	10	57	1.56
9102399--9102440	13	3.2	13	83	10	50	30	0	2	66	1.04
9102430--9102466	18	2.0	20	89	10	60	51	0	0	48	1.00
9102504--9102549	19	2.5	19	85	3	58	56	2	0	41	1.11
9116762--9116793	2	16.0	2	100	0	64	50	0	50	0	1.00
9136856--9136919	33	1.9	33	87	0	92	25	12	17	45	1.83
9137002--9137049	18	2.6	17	81	12	60	16	4	50	29	1.64
9151051--9151094	3	14.7	3	95	0	52	25	0	9	65	1.21
9151472--9151507	2	18.0	2	94	0	63	0	52	0	47	1.00
9161554--9164021	640	3.9	638	90	4	3816	34	16	15	33	1.90
9166710--9166773	33	1.9	33	93	0	110	43	7	25	23	1.80
9167246--9167288	21	2.0	22	86	13	63	27	23	20	27	1.99
9171637--9171688	24	2.2	24	96	0	95	23	15	30	30	1.95
9176366--9176416	25	2.0	25	100	0	102	45	19	15	19	1.86
9183190--9183242	22	2.3	23	78	18	58	60	0	15	24	1.35
9184134--9184197	31	2.1	31	85	2	85	34	14	4	46	1.65
9184801--9184852	21	2.5	21	87	0	77	25	19	23	32	1.97
9184788--9184987	66	3.0	66	76	2	202	34	15	17	32	1.91
9184896--9185011	45	2.6	45	88	0	160	31	15	18	34	1.92
9184926--9185079	21	6.5	24	67	23	94	35	16	16	31	1.91
9185094--9185156	29	2.2	29	88	5	92	47	11	4	36	1.60
9185094--9185169	29	2.7	28	84	8	82	43	13	5	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9185730--9185755	10	2.6	10	100	0	52	69	0	0	30	0.89
9187125--9187162	15	2.4	16	86	4	51	47	0	2	50	1.15
9187200--9187289	27	3.3	28	74	11	80	46	1	2	50	1.21
9194657--9194694	19	2.0	19	94	0	67	55	5	7	31	1.51
9209924--9209955	12	2.4	14	90	10	50	15	3	3	78	1.01
9211318--9211380	16	3.8	17	71	21	62	74	0	3	22	0.96
9215624--9215661	19	2.0	19	94	0	67	55	5	5	34	1.45
9224688--9224718	15	2.1	15	100	0	62	35	6	25	32	1.82
9228446--9228505	32	1.9	32	82	3	77	35	8	10	46	1.67
9260520--9260568	2	24.5	2	87	0	71	46	2	2	48	1.25
9299920--9299948	2	15.0	2	92	7	51	0	48	0	51	1.00
9303493--9303636	71	2.0	71	98	0	279	22	16	18	42	1.89
9304980--9305044	25	2.6	25	85	4	78	36	12	3	47	1.57
9311647--9311719	27	2.7	28	85	4	89	32	6	17	42	1.76
9311636--9311723	27	3.3	27	80	3	88	31	9	14	44	1.77
9311752--9311978	27	8.4	27	81	11	234	31	17	16	33	1.93
9311753--9311990	54	4.4	54	81	8	270	30	18	16	34	1.93
9311752--9311993	108	2.2	108	86	4	337	30	17	16	34	1.93
9313663--9313718	2	28.5	2	78	3	60	42	5	3	48	1.43
9319656--9319767	30	3.8	30	83	2	154	35	15	33	16	1.90
9332221--9332260	20	2.0	21	85	5	55	42	0	2	55	1.13
9338524--9338579	28	2.0	29	85	3	78	35	14	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9350779--9350804	2	13.0	2	100	0	52	0	0	50	50	1.00
9360962--9361128	78	2.1	78	92	0	280	17	20	22	38	1.93
9372283--9372440	26	6.1	24	72	17	88	68	0	1	29	1.02
9372274--9372442	7	24.4	7	67	24	51	68	0	1	30	1.02
9372267--9372381	30	3.9	28	70	20	60	67	0	1	29	1.06
9372287--9372427	49	2.9	46	77	13	140	67	0	1	30	1.04
9372300--9372439	54	2.6	55	77	10	139	67	0	1	30	0.99
9372262--9372442	39	4.5	42	72	17	129	67	0	1	30	1.02
9372379--9372443	32	2.0	33	90	3	105	69	0	0	30	0.89
9372364--9372503	13	9.8	14	64	23	60	65	0	2	31	1.13
9382716--9382750	12	2.7	13	86	13	54	80	0	14	5	0.89
9388988--9389076	31	2.8	31	73	8	90	40	3	0	56	1.16
9407878--9407909	12	2.7	12	90	0	55	0	9	0	90	0.45
9408276--9408310	12	3.2	11	92	8	54	82	2	8	5	0.91
9416971--9417002	2	16.0	2	93	0	55	50	3	0	46	1.17
9418113--9418155	16	2.7	16	82	10	52	62	4	0	32	1.15
9418113--9418165	15	3.7	15	76	16	51	64	3	0	32	1.12
9418143--9418180	10	3.7	10	86	6	58	65	0	0	34	0.93
9418109--9418178	20	3.4	20	71	7	59	62	2	0	34	1.10
9418847--9418968	63	1.9	63	96	0	226	31	22	10	35	1.89
9420268--9420338	15	4.9	15	68	25	62	52	2	1	43	1.24
9420268--9420354	43	2.0	43	84	2	113	51	2	3	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9433947--9433992	23	2.0	24	91	8	78	71	0	21	6	1.08
9435915--9436312	198	2.0	199	96	1	735	26	17	22	33	1.96
9439427--9439485	21	2.9	21	78	19	70	32	1	3	62	1.21
9439969--9440008	19	2.1	19	90	0	62	60	0	0	40	0.97
9449234--9449277	21	2.2	19	84	8	52	59	18	0	22	1.38
9450841--9450898	24	2.4	24	83	16	75	55	0	0	44	0.99
9453451--9453486	19	1.9	18	88	5	54	25	5	0	69	1.10
9463327--9463356	2	15.0	2	100	0	60	50	0	0	50	1.00
9483792--9483825	14	2.4	14	90	9	52	52	5	0	41	1.25
9492161--9492226	33	2.0	33	84	0	87	48	1	4	45	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22