genome.fa.s6.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  21  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9492279--9492330	7	7.4	7	76	8	52	63	0	0	36	0.95
9492275--9492329	3	17.7	3	75	20	51	63	0	0	36	0.95
9492280--9492329	10	4.8	10	88	9	73	62	0	0	38	0.96
9492842--9492890	25	2.0	25	84	8	64	40	0	0	59	0.98
9494910--9494969	24	2.5	24	89	5	86	53	13	8	25	1.67
9495262--9495308	25	1.9	24	82	4	58	36	14	6	42	1.72
9495670--9495723	19	2.8	19	75	16	58	61	1	3	33	1.25
9495673--9495724	3	18.0	3	77	15	56	63	1	1	32	1.16
9495673--9495724	23	2.3	23	83	6	70	63	1	1	32	1.16
9496195--9497356	247	4.8	242	77	8	999	36	7	5	50	1.54
9496830--9496872	21	2.0	20	83	16	52	30	6	4	58	1.45
9503328--9503361	2	18.0	2	88	11	54	0	50	0	50	1.00
9516248--9516301	28	1.9	29	85	7	76	37	3	1	57	1.27
9520282--9520310	2	14.5	2	100	0	58	0	48	0	51	1.00
9531317--9531345	2	14.5	2	100	0	58	48	0	51	0	1.00
9537790--9537823	18	1.9	18	88	5	52	76	17	5	0	0.98
9564148--9564207	30	2.0	30	83	0	75	35	13	16	35	1.88
9566406--9566442	2	18.5	2	100	0	74	51	0	48	0	1.00
9572744--9572768	7	3.6	7	100	0	50	0	12	28	60	1.32
9581593--9581622	2	14.5	2	93	6	51	50	0	46	3	1.18
9590408--9590441	18	2.0	16	88	11	50	29	0	0	70	0.87
9591352--9591377	5	5.2	5	100	0	52	57	0	42	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9605550--9605705	50	3.2	48	78	2	159	36	20	16	26	1.94
9606891--9607145	140	1.8	139	88	0	384	35	17	16	30	1.92
9624754--9625053	147	2.0	147	92	1	503	24	15	18	42	1.89
9630280--9630322	22	1.9	23	85	4	61	4	9	32	53	1.53
9643801--9643866	12	5.8	12	80	8	84	39	31	1	27	1.66
9647431--9647456	2	13.0	2	100	0	52	50	0	0	50	1.00
9654316--9654351	2	18.5	2	88	5	56	52	0	0	47	1.00
9655674--9655733	30	2.0	30	90	0	93	35	13	18	33	1.89
9655801--9656505	373	1.9	375	92	1	1189	35	14	17	32	1.90
9683361--9683458	49	2.0	49	92	8	162	37	6	12	43	1.67
9695375--9695405	2	15.5	2	100	0	62	48	0	0	51	1.00
9718671--9718725	28	2.0	28	92	0	92	65	9	0	25	1.22
9730121--9730150	16	1.9	16	93	6	53	30	0	6	63	1.20
9732459--9732485	14	1.9	14	100	0	54	44	29	0	25	1.54
9733982--9734035	20	2.9	19	78	8	58	46	3	7	42	1.49
9736242--9736267	2	13.0	2	100	0	52	50	0	0	50	1.00
9740941--9740982	15	2.7	16	88	3	59	52	0	0	47	1.00
9741108--9741141	17	2.0	17	88	0	50	50	2	0	47	1.16
9741273--9741317	22	2.2	21	84	11	58	55	4	0	40	1.20
9765411--9765449	20	2.0	20	84	0	51	33	7	17	41	1.79
9767157--9767204	23	2.2	21	82	14	53	45	2	0	52	1.12
9773619--9773656	20	1.9	20	88	0	58	26	21	7	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9776390--9776429	20	1.9	22	85	10	57	37	5	37	20	1.74
9778362--9778386	2	12.5	2	100	0	50	52	0	0	48	1.00
9784010--9784337	171	1.9	172	84	3	444	27	17	14	40	1.88
9787246--9787277	7	4.6	7	92	0	55	0	37	0	62	0.95
9787569--9787895	160	2.0	160	89	2	492	36	20	15	27	1.93
9791370--9791649	73	3.8	72	77	11	210	34	21	10	33	1.87
9791438--9791650	77	2.9	73	78	12	184	35	22	8	32	1.85
9797103--9797139	2	18.5	2	88	0	56	0	54	0	45	1.00
9805832--9805862	3	10.3	3	100	0	62	67	0	0	32	0.91
9808667--9808694	2	14.0	2	100	0	56	50	0	0	50	1.00
9811709--9811734	2	13.0	2	100	0	52	50	0	0	50	1.00
9812064--9812101	19	2.0	19	90	10	60	0	23	2	73	0.95
9823199--9823393	84	2.3	86	87	6	290	54	17	10	16	1.69
9824752--9824902	72	2.1	70	82	4	187	48	7	11	31	1.69
9825439--9825515	32	2.5	30	76	13	77	59	3	3	32	1.34
9836553--9836596	21	2.1	21	87	4	63	34	15	6	43	1.74
9840768--9840817	22	2.3	22	79	6	57	52	2	2	44	1.24
9840778--9840832	23	2.3	24	84	9	69	49	1	0	49	1.11
9842055--9842327	139	2.0	133	91	5	438	33	13	20	31	1.91
9842307--9842351	2	22.5	2	95	0	81	48	0	2	48	1.13
9846547--9846586	19	2.1	19	90	0	62	50	2	0	47	1.14
9852644--9852699	29	1.9	30	85	7	80	35	7	0	57	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9852943--9852997	29	1.9	28	85	10	76	65	0	1	32	1.03
9870031--9870071	2	20.5	2	94	0	73	53	0	46	0	1.00
9881134--9881169	2	19.5	2	83	16	51	0	50	0	50	1.00
9881134--9881169	7	4.9	8	87	12	51	0	50	0	50	1.00
9887478--9887923	237	1.9	237	79	3	513	36	19	11	30	1.88
9888991--9889023	17	2.1	16	88	11	50	51	0	0	48	1.00
9889390--9889430	21	1.9	20	85	14	55	51	2	2	43	1.28
9908581--9908645	31	2.1	31	85	0	85	49	12	9	29	1.71
9912924--9912950	14	1.9	14	100	0	54	70	7	0	22	1.12
9921626--9921650	2	12.5	2	100	0	50	0	52	0	48	1.00
9922843--9923163	126	2.6	125	88	3	457	26	17	20	35	1.94
9947106--9947158	25	2.1	25	89	0	79	52	13	18	15	1.74
9948266--9948303	6	6.3	6	93	0	67	2	50	13	34	1.55
9959171--9959215	2	22.0	2	95	4	81	2	48	0	48	1.13
9961265--9961547	108	2.6	108	83	1	361	32	16	21	29	1.95
9962890--9963016	64	2.0	64	87	3	184	44	7	16	31	1.76
9966602--9966636	16	2.2	16	89	0	52	31	14	14	40	1.86
9979056--9979093	20	1.9	20	100	0	76	52	5	5	36	1.47
9979448--9979661	115	1.9	113	93	1	365	35	19	11	33	1.88
9984873--9984908	18	2.0	18	94	0	63	30	5	8	55	1.52
9990325--9990359	2	17.5	2	100	0	70	0	48	0	51	1.00
9990343--9990399	28	2.1	26	83	6	69	0	35	1	63	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9990353--9990402	18	2.8	17	82	11	55	0	32	2	66	1.03
9992043--9992083	2	20.5	2	100	0	82	48	0	0	51	1.00
9995193--9995269	40	1.9	41	83	2	102	19	22	22	36	1.95
10015231--10015292	26	2.4	26	86	0	79	41	33	9	14	1.79
10028869--10028912	22	2.0	23	81	4	54	52	2	4	40	1.34
10045487--10045577	45	2.0	45	95	0	164	19	16	23	40	1.91
10053553--10053729	93	1.9	94	92	1	302	40	18	15	25	1.90
10056476--10056613	52	2.7	50	83	6	170	31	28	13	26	1.94
10069108--10069253	36	4.1	36	94	1	249	24	29	15	30	1.95
10075067--10075091	7	3.6	7	100	0	50	88	0	12	0	0.53
10075293--10075317	9	2.8	9	100	0	50	0	12	8	80	0.92
10077789--10077830	13	3.0	15	83	16	63	38	0	0	61	0.96
10088373--10088428	28	2.0	28	89	0	85	42	1	12	42	1.53
10119159--10119183	3	8.3	3	100	0	50	32	0	0	68	0.90
10130322--10130382	30	2.0	30	96	0	113	3	39	9	47	1.53
10142652--10142763	42	2.6	42	75	19	124	19	31	27	21	1.97
10143214--10143246	15	2.1	16	88	5	50	30	0	3	66	1.06
10151701--10151727	2	13.5	2	100	0	54	48	0	51	0	1.00
10181394--10181501	52	2.0	52	80	10	119	24	9	0	66	1.20
10181433--10181477	21	2.1	22	84	12	58	26	11	0	62	1.29
10181737--10181854	59	2.0	59	86	3	166	35	1	15	47	1.55
10181900--10181941	19	2.2	20	87	8	61	57	4	0	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10189724--10189768	21	2.1	21	83	0	54	53	4	0	42	1.21
10191340--10191446	52	2.1	52	90	0	169	34	22	23	19	1.96
10194387--10194416	2	15.0	2	100	0	60	0	50	0	50	1.00
10208011--10208061	14	3.7	14	82	15	54	41	0	3	54	1.19
10208004--10208061	14	4.2	14	78	14	50	43	0	5	51	1.24
10208011--10208047	13	2.8	13	87	4	56	40	0	2	56	1.13
10208169--10208202	16	2.1	16	88	0	50	52	0	2	44	1.16
10216867--10216893	2	13.5	2	100	0	54	51	0	48	0	1.00
10217498--10217522	2	12.5	2	100	0	50	52	0	48	0	1.00
10219191--10219220	4	7.5	4	100	0	60	73	0	0	26	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22