genome.fa.s6.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  8  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3071707--3071753	8	6.1	8	80	5	53	17	2	0	80	0.80
3073013--3073079	31	2.1	32	86	8	93	32	2	2	61	1.26
3073013--3073106	30	3.0	31	84	6	93	35	2	5	57	1.33
3073325--3073385	28	2.2	28	82	5	70	60	1	1	36	1.16
3073325--3073392	30	2.4	28	80	7	73	58	2	1	36	1.22
3074187--3074218	5	6.4	5	96	0	55	34	3	62	0	1.11
3106429--3106486	21	2.7	22	78	7	57	44	0	3	51	1.18
3108864--3108893	4	7.5	4	100	0	60	26	0	23	50	1.50
3111037--3111791	279	2.7	279	82	5	882	46	10	12	30	1.75
3119288--3119319	17	1.9	16	93	6	55	43	9	0	46	1.35
3125016--3125063	4	12.0	4	95	0	87	52	25	0	22	1.48
3129367--3129415	23	2.2	23	82	10	57	51	0	0	48	1.00
3129959--3129983	6	4.2	6	100	0	50	0	20	64	16	1.30
3131299--3131380	31	2.7	30	76	16	87	58	0	6	35	1.23
3132681--3132719	20	2.0	20	89	0	60	46	23	23	7	1.78
3132682--3132727	20	2.3	20	85	3	58	47	23	21	6	1.74
3138087--3138117	15	2.1	15	93	0	53	70	3	25	0	1.02
3146501--3146575	38	2.0	37	82	7	89	52	8	4	36	1.50
3150491--3150539	14	3.3	14	77	22	55	38	0	0	61	0.96
3156211--3156240	10	3.0	10	95	0	51	43	0	56	0	0.99
3157459--3157486	2	14.0	2	100	0	56	50	0	0	50	1.00
3159758--3159803	22	2.0	24	87	8	69	34	0	2	63	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3163383--3163424	21	2.1	21	86	8	61	28	21	7	42	1.79
3167654--3167703	13	3.8	13	83	2	64	80	0	20	0	0.72
3167654--3167703	16	3.4	15	82	17	61	80	0	20	0	0.72
3169956--3170124	22	7.4	22	71	15	101	49	2	2	46	1.27
3170044--3170149	50	2.1	50	82	6	126	50	1	3	44	1.31
3175635--3175675	2	21.0	2	90	5	66	46	0	2	51	1.14
3178524--3178552	14	2.1	14	93	6	51	34	6	3	55	1.44
3178888--3178944	11	5.4	11	80	14	57	0	61	0	38	0.96
3180974--3181013	16	2.5	16	91	0	62	47	17	0	35	1.48
3183262--3183294	2	16.5	2	100	0	66	51	0	0	48	1.00
3198963--3199230	138	1.9	138	85	1	367	33	17	14	34	1.90
3199567--3199605	16	2.5	17	84	16	57	58	0	5	35	1.20
3199567--3199604	15	2.4	16	87	12	53	60	0	5	34	1.19
3204666--3204691	2	13.0	2	100	0	52	50	0	0	50	1.00
3225258--3225291	3	11.3	3	93	0	50	38	0	0	61	0.96
3227663--3227730	22	3.1	22	87	4	84	29	8	8	52	1.62
3227739--3227799	23	2.7	23	84	2	79	31	9	21	37	1.86
3227828--3227891	22	2.9	22	88	0	92	51	17	6	25	1.68
3230852--3231131	28	10.2	28	70	7	117	40	16	6	36	1.74
3230927--3231128	82	2.4	83	78	7	223	41	16	4	37	1.69
3230866--3231184	55	5.8	53	72	10	166	41	15	6	36	1.75
3231103--3231203	52	2.0	51	84	5	132	39	13	12	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3234000--3234032	17	1.9	17	88	11	50	33	24	3	39	1.71
3236607--3236638	12	2.7	12	95	0	55	0	37	0	62	0.95
3241556--3241580	2	12.5	2	100	0	50	0	48	0	52	1.00
3256062--3256109	25	2.0	25	87	4	71	33	4	0	62	1.14
3256037--3256231	63	3.1	63	76	2	158	33	5	1	58	1.30
3257004--3257054	14	3.6	14	76	10	50	35	1	1	60	1.19
3257065--3257114	18	2.7	18	81	6	55	38	2	0	60	1.09
3261521--3261574	13	4.2	13	75	18	51	35	0	3	61	1.14
3264395--3264432	14	2.7	14	88	8	51	34	0	7	57	1.28
3264390--3264430	15	2.6	16	81	14	50	39	0	7	53	1.29
3264763--3264813	23	2.2	24	86	10	70	43	0	3	52	1.19
3264761--3264813	26	2.1	24	82	6	61	45	0	3	50	1.19
3264878--3264929	14	3.5	15	76	10	54	55	0	1	42	1.10
3264878--3264911	15	2.2	16	89	5	52	50	0	2	47	1.16
3270519--3270563	5	8.6	5	87	7	63	0	17	4	77	0.92
3270872--3271060	90	2.1	89	84	5	242	46	6	6	40	1.56
3270925--3271098	90	1.9	90	82	0	213	45	6	6	40	1.58
3272517--3272596	33	2.4	33	87	0	115	46	13	1	38	1.52
3272675--3272734	31	1.9	31	86	0	84	58	5	3	33	1.36
3272702--3272758	29	2.0	28	83	10	71	52	1	12	33	1.49
3276582--3276609	2	14.0	2	100	0	56	50	0	0	50	1.00
3281660--3281697	18	2.0	21	85	15	55	0	47	5	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3286791--3286831	2	21.5	2	90	9	68	48	0	51	0	1.00
3286792--3286830	13	3.0	13	100	0	78	46	0	53	0	1.00
3291882--3291932	15	3.3	15	72	10	50	68	0	1	29	1.00
3295083--3295151	32	2.2	32	82	10	88	59	0	1	39	1.06
3297617--3297664	6	8.3	6	86	9	73	47	16	2	33	1.58
3298768--3299021	118	2.2	118	81	4	289	29	26	17	25	1.98
3304299--3304324	13	2.0	13	100	0	52	46	0	7	46	1.31
3307101--3307170	27	2.6	27	97	0	131	10	22	35	31	1.87
3307395--3307439	2	22.5	2	90	0	72	48	0	2	48	1.13
3308374--3308416	6	7.2	6	89	0	50	51	11	0	37	1.39
3308382--3308420	2	19.5	2	89	0	60	51	5	0	43	1.24
3308382--3308420	12	3.2	12	96	0	69	51	5	0	43	1.24
3310222--3310282	31	2.0	31	83	0	77	26	9	3	60	1.43
3317577--3317639	24	2.8	22	76	9	72	26	6	15	50	1.68
3323770--3323807	16	2.4	16	100	0	76	18	21	23	36	1.95
3324319--3324379	32	1.9	32	90	6	97	45	9	1	42	1.47
3324507--3324596	43	2.1	43	93	0	153	38	3	18	38	1.68
3329400--3329438	15	2.5	15	87	4	51	0	20	0	79	0.73
3329405--3329438	18	1.9	17	94	5	59	0	17	0	82	0.67
3331098--3331130	16	2.0	17	88	5	50	57	0	3	39	1.14
3332211--3332249	7	5.6	7	87	0	60	15	25	15	43	1.86
3332206--3332249	14	3.1	14	86	0	61	15	25	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3333563--3333595	18	1.9	18	88	11	52	72	3	12	12	1.23
3334112--3334160	25	1.9	26	84	12	66	14	30	6	48	1.67
3340545--3340579	18	1.9	18	88	0	52	54	0	0	45	0.99
3345184--3345271	32	2.8	32	86	6	99	27	20	13	38	1.90
3345195--3345271	32	2.4	32	93	4	129	24	22	14	38	1.91
3350035--3350089	26	2.2	24	80	6	56	40	3	1	54	1.28
3363183--3363222	16	2.5	17	76	15	50	30	25	25	20	1.99
3364637--3364671	14	2.5	14	90	0	52	11	5	0	82	0.82
3369020--3369048	2	14.5	2	100	0	58	48	0	0	51	1.00
3372282--3372308	2	13.5	2	100	0	54	48	0	0	51	1.00
3378043--3378068	12	2.2	12	100	0	52	15	7	19	57	1.62
3394753--3395050	81	3.7	82	77	7	279	43	18	19	19	1.89
3396706--3396750	21	2.2	21	84	11	58	46	0	0	53	1.00
3396706--3396745	20	2.0	20	86	13	57	45	0	0	55	0.99
3405961--3406227	112	2.4	112	80	5	288	20	13	18	47	1.82
3420381--3420417	18	2.0	19	89	5	58	45	0	0	54	1.00
3421062--3421095	12	2.9	12	91	4	52	41	8	2	47	1.50
3422104--3422152	20	2.5	20	80	6	55	24	4	0	71	1.03
3460078--3460159	44	1.9	41	85	7	110	30	19	13	36	1.90
3462500--3462525	2	13.0	2	100	0	52	50	0	0	50	1.00
3474744--3474800	29	2.0	29	82	6	71	31	0	7	61	1.23
3476929--3476992	25	2.7	24	83	11	71	60	3	0	35	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3481023--3481052	13	2.4	12	89	10	51	40	0	0	60	0.97
3488959--3488995	3	12.3	3	100	0	74	67	0	0	32	0.91
3498737--3498777	21	2.0	21	85	9	57	65	2	0	31	1.05
3501980--3502214	117	2.0	117	93	0	398	38	12	21	27	1.90
3513244--3513269	5	5.2	5	100	0	52	0	0	19	80	0.71
3521913--3521975	21	3.0	21	92	0	90	22	23	15	38	1.93
3526004--3526040	15	2.5	15	95	0	65	48	2	5	43	1.40
3536447--3536587	75	1.9	75	85	2	194	42	9	12	36	1.74
3537604--3537667	28	2.3	28	80	0	74	50	0	1	48	1.10
3540814--3540843	2	15.0	2	100	0	60	0	50	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22