genome.fa.s6.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  19  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8316766--8316794	4	7.5	4	92	7	51	79	0	20	0	0.74
8319586--8319615	2	15.0	2	100	0	60	50	0	0	50	1.00
8338065--8338110	21	2.2	21	84	7	58	34	4	8	52	1.52
8343034--8343085	24	2.2	24	82	6	61	40	15	11	32	1.83
8342853--8343086	82	2.8	82	81	2	256	43	11	11	33	1.77
8343019--8343189	54	3.1	53	76	6	182	41	12	11	33	1.80
8343018--8343189	56	3.1	54	75	5	175	41	12	11	33	1.80
8342892--8343251	192	1.9	193	91	1	587	41	11	11	35	1.79
8348673--8348701	6	4.8	6	100	0	58	86	13	0	0	0.58
8348856--8348891	16	2.2	16	95	0	63	66	0	8	25	1.19
8349046--8349096	26	2.0	23	85	14	66	41	0	0	58	0.98
8349053--8349109	27	2.2	26	84	6	71	43	1	1	52	1.21
8349105--8349177	18	3.8	18	70	22	51	43	1	2	52	1.24
8349021--8349354	156	2.1	157	84	4	451	40	1	2	55	1.25
8349071--8349374	157	1.9	156	84	4	398	42	1	2	53	1.26
8349077--8349410	157	2.1	157	79	9	371	42	1	2	52	1.26
8349354--8349415	15	4.3	15	71	21	51	45	1	1	51	1.20
8349360--8349439	27	3.1	24	77	19	74	43	2	1	52	1.22
8349476--8349538	27	2.3	28	81	10	76	41	1	3	53	1.26
8349520--8349594	39	1.9	39	84	7	100	49	2	1	46	1.24
8349206--8349594	140	2.8	139	83	11	512	44	2	1	51	1.24
8352203--8352234	14	2.3	14	100	0	64	31	12	18	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8360953--8360996	13	3.1	15	75	18	58	29	4	9	56	1.50
8360953--8361009	27	2.1	27	83	6	71	31	5	12	50	1.62
8370739--8370805	34	2.0	34	90	0	107	37	16	13	32	1.88
8373530--8373592	21	3.0	21	86	6	83	30	28	19	22	1.98
8373553--8373596	21	2.1	21	100	0	88	29	31	20	18	1.96
8383101--8383147	19	2.5	19	92	0	76	31	4	8	55	1.49
8398921--8398960	21	1.9	21	89	0	62	17	45	0	37	1.49
8409029--8409124	18	5.3	18	89	0	138	25	26	18	30	1.98
8414534--8414583	21	2.3	21	86	10	57	0	76	22	2	0.89
8414534--8414788	5	50.6	5	69	19	106	0	78	18	2	0.92
8414534--8414794	54	5.0	49	71	18	172	0	78	18	2	0.91
8414542--8414790	21	11.9	20	69	18	125	0	78	17	2	0.91
8414554--8414794	50	4.6	52	72	19	162	0	78	17	2	0.92
8414555--8414790	69	3.4	67	77	15	182	0	78	17	2	0.92
8414651--8414740	1	90.0	1	77	0	81	0	87	11	1	0.59
8414542--8414707	87	1.9	87	83	9	214	0	77	19	3	0.94
8414543--8414790	66	3.9	63	73	15	197	0	79	17	2	0.91
8422668--8422698	3	10.3	3	100	0	62	67	0	0	32	0.91
8426409--8426450	2	21.5	2	80	4	50	45	0	52	2	1.13
8428227--8428270	18	2.4	18	96	0	79	31	6	29	31	1.84
8437168--8437197	15	1.9	16	93	6	53	43	13	0	43	1.43
8439841--8439913	21	3.5	21	75	17	71	64	0	2	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8439938--8440024	34	2.6	33	84	10	106	67	0	2	29	1.03
8439938--8440024	32	2.6	33	82	13	99	67	0	2	29	1.03
8440242--8440283	15	2.8	15	88	0	57	33	28	7	30	1.84
8441080--8441181	30	3.5	31	81	12	85	30	9	8	50	1.66
8444752--8444782	2	15.5	2	100	0	62	51	0	48	0	1.00
8446411--8446449	20	1.9	21	89	5	62	58	0	5	35	1.20
8448773--8448875	54	1.9	54	87	0	152	39	17	8	33	1.81
8449298--8449667	186	2.0	185	89	2	564	48	14	7	29	1.71
8458396--8458421	12	2.2	12	100	0	52	50	7	0	42	1.31
8474214--8474242	14	2.0	15	93	6	51	62	6	31	0	1.22
8488864--8488893	3	10.0	3	92	0	51	66	3	0	30	1.07
8490437--8490531	47	2.0	47	95	0	172	41	16	11	30	1.84
8492432--8492467	17	2.1	18	89	5	56	41	5	0	52	1.24
8493391--8493428	9	4.2	9	80	12	51	10	0	5	84	0.77
8493388--8493435	21	2.1	23	85	11	64	12	0	10	77	1.00
8494699--8494736	15	2.5	15	91	0	58	36	31	10	21	1.87
8498540--8498591	3	17.7	3	96	4	97	65	0	0	34	0.93
8510864--8510922	29	2.0	30	90	3	93	30	27	18	23	1.98
8513146--8513221	27	2.8	28	94	6	138	55	0	0	44	0.99
8513208--8513269	31	2.0	31	84	6	81	59	0	3	37	1.13
8513947--8514018	36	2.0	36	91	0	117	40	9	22	27	1.85
8514260--8514326	29	2.2	30	82	10	75	32	5	5	55	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8529334--8529385	21	2.5	21	100	0	104	36	3	15	44	1.65
8529297--8529365	35	1.9	36	85	8	97	43	7	11	37	1.69
8537849--8537885	5	7.6	5	96	3	67	0	16	0	83	0.64
8541614--8541748	66	2.0	66	100	0	270	26	11	17	43	1.84
8544463--8544506	21	2.1	21	86	0	61	2	15	4	77	1.04
8544475--8544518	21	2.1	21	87	8	63	0	22	6	70	1.11
8545365--8545419	24	2.3	23	75	12	56	38	7	16	38	1.76
8556700--8556731	16	1.9	17	93	6	57	0	15	0	84	0.63
8572549--8572583	15	2.3	15	90	0	52	8	2	22	65	1.34
8585762--8585796	16	2.2	16	89	0	52	65	0	0	34	0.93
8585756--8585792	20	1.9	18	89	10	56	62	0	0	37	0.96
8585915--8586378	215	2.2	211	82	9	523	48	3	4	42	1.41
8586353--8586384	9	3.8	9	88	12	50	53	0	0	46	1.00
8613121--8613341	84	2.8	80	84	5	261	28	27	19	23	1.99
8620337--8620453	42	2.8	42	92	0	198	42	10	24	22	1.84
8621671--8621710	11	3.5	11	83	6	53	87	5	0	7	0.66
8621667--8621711	20	2.2	21	88	4	65	84	4	0	11	0.76
8621673--8621709	18	2.0	20	89	10	60	86	5	0	8	0.70
8630387--8630433	2	23.5	2	100	0	94	51	0	0	48	1.00
8640268--8640308	21	2.0	21	90	0	64	26	19	19	34	1.96
8650829--8650879	9	5.6	9	75	13	50	64	3	0	31	1.11
8650826--8650877	13	3.8	13	78	9	59	67	3	0	28	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8650826--8650879	28	2.0	28	89	7	85	66	3	0	29	1.09
8654158--8654190	2	16.5	2	93	0	57	54	0	0	45	0.99
8656147--8656177	2	15.5	2	100	0	62	51	0	0	48	1.00
8658861--8658898	19	2.0	19	89	0	58	39	23	7	28	1.83
8659195--8659248	2	27.0	2	88	7	83	48	0	3	48	1.19
8659248--8659281	2	17.0	2	100	0	68	50	0	50	0	1.00
8662816--8662875	21	3.0	21	80	4	61	58	6	0	35	1.24
8662951--8662992	9	4.8	9	85	11	52	73	0	0	26	0.83
8675251--8675279	2	14.5	2	100	0	58	51	0	0	48	1.00
8680388--8680431	18	2.4	18	84	0	61	72	6	9	11	1.27
8687593--8687648	25	2.2	25	84	9	69	39	33	8	17	1.81
8693023--8693062	20	2.0	20	100	0	80	45	15	25	15	1.84
8723819--8723873	26	2.1	26	80	12	60	50	0	0	49	1.00
8724255--8724295	18	2.2	19	87	12	59	58	0	0	41	0.98
8725730--8725906	65	2.8	63	85	7	227	55	9	6	28	1.57
8730575--8730608	2	17.0	2	100	0	68	50	0	0	50	1.00
8730676--8730715	20	2.1	19	85	4	53	20	20	10	50	1.76
8735182--8735257	38	2.0	38	94	0	134	31	10	18	39	1.85
8752273--8752299	8	3.4	8	100	0	54	40	0	59	0	0.98
8776935--8776964	2	15.0	2	92	0	51	50	3	0	46	1.18
8781475--8781832	191	1.9	191	80	5	429	25	13	18	42	1.87
8783023--8783054	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8791300--8791331	7	4.6	7	92	0	55	0	46	0	53	1.00
8791300--8791335	14	2.6	14	95	0	63	0	47	0	52	1.00
8792884--8792924	19	2.1	20	90	4	66	43	0	0	56	0.99
8798621--8798649	14	2.0	15	93	6	51	44	0	0	55	0.99
8799842--8799867	4	6.5	4	100	0	52	23	0	0	76	0.78
8812507--8812537	3	10.3	3	100	0	62	0	32	0	67	0.91
8821598--8821629	2	16.0	2	100	0	64	50	0	50	0	1.00
8829344--8829383	20	2.0	20	85	4	55	45	2	0	52	1.14
8830404--8830452	24	2.0	24	88	8	71	73	0	10	16	1.09
8831842--8831867	2	13.0	2	100	0	52	50	0	50	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22