genome.fa.s6.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397259.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_147.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10737078

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  2  of  22  ( 2632 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565736--566427	30	22.5	30	63	13	122	31	17	15	35	1.91
567778--567816	11	3.6	11	87	12	55	5	12	0	82	0.83
567773--567808	11	2.9	13	84	16	58	5	16	0	77	0.94
569231--569275	22	2.0	24	86	8	67	35	4	28	31	1.77
573165--573303	29	4.9	30	68	17	98	36	10	10	42	1.74
573174--573370	81	2.4	81	81	9	215	36	12	10	41	1.76
574916--574964	22	2.2	22	96	0	89	32	14	16	36	1.89
575042--575103	20	2.8	23	76	11	76	22	9	20	46	1.80
575099--575160	23	2.8	22	87	2	88	27	11	24	37	1.89
575154--575202	23	2.1	23	85	7	64	32	12	22	32	1.91
575244--575285	21	2.0	21	86	4	59	45	26	7	21	1.77
579226--579257	11	2.9	11	90	0	55	6	12	0	81	0.87
581768--582469	280	2.5	280	84	0	983	31	23	16	27	1.96
585288--585385	29	3.4	30	80	10	98	41	11	5	41	1.63
594129--594213	22	3.9	22	75	6	75	21	10	22	45	1.82
594225--594273	23	2.1	23	85	7	64	32	22	12	32	1.91
594267--594328	23	2.7	23	87	2	90	37	24	11	27	1.89
594322--594394	22	3.3	22	75	7	85	42	20	13	23	1.88
594447--594513	22	3.0	22	88	0	89	38	14	13	32	1.86
597497--597530	15	2.1	17	89	10	54	0	11	5	82	0.83
597497--597530	16	2.2	15	89	5	50	0	11	5	82	0.83
608231--608285	27	2.0	29	85	7	78	47	5	5	41	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608214--608285	27	2.6	27	80	8	74	45	9	4	40	1.56
608370--608428	29	2.0	30	86	3	84	44	8	5	42	1.57
612446--612485	21	1.9	21	90	10	64	35	10	15	40	1.80
627150--627194	20	2.3	20	85	7	58	53	2	0	44	1.13
627145--627193	17	2.7	18	80	17	57	55	2	0	42	1.11
627823--628037	116	1.9	116	81	3	263	44	10	11	33	1.76
630081--630174	18	5.2	18	70	5	73	43	15	11	28	1.82
630077--630178	36	2.9	36	82	1	125	43	17	11	27	1.84
630837--630933	34	2.9	34	81	3	88	39	21	12	26	1.89
631494--631526	17	1.9	17	88	11	50	48	0	12	39	1.40
632139--632180	16	2.8	16	82	10	52	57	21	2	19	1.52
635538--635623	43	2.0	45	86	4	122	27	8	10	53	1.63
635752--635806	28	2.0	28	92	7	94	40	16	7	36	1.76
635756--635819	28	2.3	28	83	0	83	35	20	6	37	1.78
635798--635876	29	2.8	28	80	5	70	30	13	13	41	1.84
635830--635891	27	2.3	28	86	5	92	32	9	17	40	1.82
636165--636290	64	2.0	64	87	0	180	42	15	15	26	1.87
637005--637031	2	13.5	2	100	0	54	51	0	0	48	1.00
640282--640314	17	2.0	17	88	5	50	48	15	36	0	1.45
663011--663095	29	2.9	29	76	10	93	45	5	28	20	1.74
664636--664661	2	13.0	2	100	0	52	50	0	0	50	1.00
666809--666935	62	2.0	62	92	0	209	45	7	13	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667154--667218	32	2.0	32	100	0	130	33	16	40	9	1.81
671027--671088	25	2.5	24	78	7	70	33	3	1	61	1.22
674995--675060	29	2.2	29	81	7	71	36	1	3	59	1.22
677111--677174	30	2.1	29	85	5	83	37	6	1	54	1.35
678871--678964	29	3.2	29	80	7	109	18	26	8	46	1.77
688667--688770	14	7.3	14	65	8	66	28	29	6	34	1.83
688696--688765	15	4.7	15	70	7	54	31	35	5	27	1.80
688668--688770	44	2.4	43	95	3	181	29	30	6	33	1.83
693886--693990	14	7.3	14	64	10	59	28	30	6	34	1.83
693887--693990	45	2.4	42	93	4	172	28	30	6	33	1.83
696248--696308	29	2.1	28	87	3	86	52	3	11	32	1.54
696271--696447	88	2.0	88	98	0	345	43	6	11	38	1.66
703531--703588	23	2.5	23	74	0	62	36	24	10	29	1.88
703563--703679	46	2.6	46	82	4	148	35	21	15	27	1.93
703563--703672	23	4.8	23	84	5	134	35	21	15	27	1.94
703704--703743	21	1.9	21	94	0	71	40	22	20	17	1.92
703645--703766	21	5.6	22	69	12	65	39	22	15	22	1.92
703667--703774	21	5.0	22	73	2	67	41	22	14	21	1.89
703880--703992	60	1.9	60	81	7	140	39	17	7	34	1.79
713135--713207	38	1.9	38	83	5	94	46	16	6	30	1.73
729107--729181	38	2.0	38	92	5	125	26	8	21	44	1.80
746966--747014	2	24.5	2	100	0	98	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747015--747058	2	23.5	2	82	13	58	47	2	0	50	1.13
747016--747058	22	2.0	22	95	0	77	48	2	0	48	1.14
747544--747589	24	1.9	24	82	8	58	17	41	2	39	1.62
747816--747850	18	1.9	18	88	0	52	37	5	11	45	1.64
752160--752208	20	2.4	20	79	3	53	53	8	30	8	1.60
758247--758283	6	6.2	6	90	0	56	2	48	29	18	1.62
762580--762620	15	2.6	16	81	18	50	9	9	17	63	1.51
763604--763719	59	2.0	59	98	0	223	21	15	16	46	1.84
774774--775449	342	2.0	343	89	2	1056	34	10	16	38	1.83
779910--780129	57	3.8	56	72	14	178	40	8	11	39	1.72
779917--779993	29	2.7	28	86	4	109	45	5	10	38	1.61
779916--780129	28	7.4	28	75	11	148	40	8	11	39	1.72
788107--788163	22	2.6	22	75	5	62	29	10	26	33	1.90
789220--789281	31	2.0	31	96	0	115	50	9	12	27	1.72
794475--794631	74	2.1	74	87	0	233	41	5	7	45	1.55
794700--794787	35	2.4	35	82	12	106	40	0	1	57	1.06
795124--795223	28	3.5	28	76	4	94	37	26	10	27	1.88
804277--804658	67	5.8	67	85	3	479	48	17	6	27	1.70
806201--806253	22	2.5	21	77	20	56	7	22	5	64	1.41
806835--806883	14	3.5	13	81	13	53	44	8	2	44	1.45
806849--806883	15	2.3	15	85	0	52	42	8	2	45	1.49
807694--807740	14	3.4	14	77	13	53	61	0	2	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
815026--815054	8	3.8	8	95	4	51	0	13	6	79	0.93
850381--850415	4	8.8	4	100	0	70	51	22	0	25	1.48
850677--850725	24	2.0	25	88	11	75	22	0	6	71	1.08
851267--851297	2	15.5	2	100	0	62	0	0	48	51	1.00
857508--857542	16	2.1	17	94	5	63	34	8	11	45	1.71
858630--858672	17	2.6	17	81	3	52	23	18	20	37	1.94
862195--862270	27	2.9	25	76	16	73	71	6	0	22	1.09
862192--862275	14	6.2	13	68	25	50	69	7	0	23	1.13
866972--867061	45	2.0	45	93	0	153	31	22	14	32	1.94
885714--886093	192	2.0	192	93	1	645	28	11	12	48	1.75
891488--891516	2	14.5	2	100	0	58	48	0	0	51	1.00
895389--895431	20	2.3	18	84	8	59	39	2	0	58	1.11
901192--902398	622	1.9	622	85	1	1655	32	18	13	35	1.90
905391--905453	19	3.3	19	78	10	67	22	6	0	71	1.08
905404--905458	23	2.5	22	84	3	65	23	1	0	74	0.91
905580--905612	16	2.1	17	88	11	52	18	0	12	69	1.18
905728--905793	28	2.4	27	80	9	71	36	6	1	56	1.34
908019--908114	39	2.5	39	91	0	156	26	38	28	7	1.83
909669--909785	60	2.0	60	87	0	171	25	23	35	15	1.94
910737--910832	39	2.5	39	91	0	156	26	38	28	7	1.83
910917--911022	14	7.3	14	64	8	59	33	6	30	29	1.83
910917--911021	43	2.4	44	95	3	185	33	6	30	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914940--914965	2	13.0	2	100	0	52	50	0	0	50	1.00
926204--926232	15	1.9	15	100	0	58	55	6	0	37	1.27
929894--929926	3	11.0	3	87	12	50	0	30	3	66	1.06
943646--943672	7	3.9	7	100	0	54	59	14	14	11	1.62
949469--949513	5	8.6	5	80	9	54	77	0	0	22	0.76
949469--949516	16	3.0	16	87	6	62	77	0	0	22	0.78
953639--953684	8	5.8	8	92	0	65	39	10	0	50	1.38
953640--953684	2	22.5	2	81	0	54	40	8	0	51	1.33
953644--953682	20	2.0	20	94	0	69	38	10	0	51	1.36
957452--957495	18	2.4	18	81	7	54	31	9	2	56	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22