genome.fa.s186.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000186.1 Hibiscus syriacus cultivar Beakdansim tig00000329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3152351

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  10  of  17  ( 1977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1711780--1711830	20	2.5	20	84	12	68	15	13	13	56	1.67
1711567--1712038	182	2.6	181	88	1	678	26	16	14	43	1.86
1712782--1712879	34	2.9	34	93	0	169	54	4	5	36	1.42
1715605--1715647	2	21.5	2	100	0	86	48	0	0	51	1.00
1718701--1718751	18	2.8	18	87	0	75	19	21	29	29	1.98
1723558--1723604	23	2.0	23	100	0	94	25	36	17	21	1.94
1724692--1724947	32	8.1	32	90	3	315	27	17	19	35	1.95
1724692--1724947	64	4.0	64	89	4	360	27	17	19	35	1.95
1724692--1724938	96	2.6	95	88	3	356	26	17	20	35	1.95
1727143--1727182	21	1.9	21	94	0	71	22	20	30	27	1.98
1727217--1727271	21	2.6	21	91	0	83	30	23	20	25	1.98
1731300--1731387	41	2.2	40	81	6	97	27	28	18	26	1.98
1731423--1731918	40	12.1	40	91	4	787	21	17	23	37	1.94
1731423--1731926	82	6.2	81	92	3	793	21	18	23	36	1.95
1731423--1731918	122	4.0	123	91	3	799	21	17	23	37	1.94
1731889--1731931	21	2.0	21	86	0	59	23	23	27	25	2.00
1732493--1732578	15	5.3	15	88	5	91	0	20	44	34	1.52
1732506--1732580	6	13.5	6	91	8	108	0	17	48	34	1.48
1732677--1732748	21	3.4	21	76	14	76	38	20	19	20	1.93
1732670--1732769	42	2.4	42	93	0	164	35	23	20	22	1.96
1733543--1733572	3	10.0	3	92	0	51	0	33	3	63	1.11
1739036--1739102	22	3.0	22	100	0	134	26	26	26	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1739323--1739382	30	2.0	31	90	3	95	33	23	6	36	1.81
1739397--1739468	29	2.5	29	90	0	108	37	13	9	38	1.78
1739771--1739924	69	2.2	69	87	2	211	18	29	25	25	1.98
1739904--1739946	21	2.0	21	86	0	59	16	25	27	30	1.97
1745980--1746046	22	3.0	22	97	0	125	26	25	26	20	1.99
1746266--1746325	30	2.0	31	90	3	95	33	23	6	36	1.81
1746340--1746411	29	2.5	29	90	0	108	37	13	9	38	1.78
1746709--1746861	69	2.2	69	87	2	211	18	28	26	26	1.98
1746841--1746883	21	2.0	21	86	0	59	16	25	27	30	1.97
1748013--1748066	19	2.8	19	83	5	65	18	24	1	55	1.52
1753242--1753295	19	2.8	19	83	5	65	18	24	1	55	1.52
1756530--1756577	20	2.4	20	92	0	78	43	12	20	22	1.86
1756539--1756583	20	2.4	19	88	7	65	48	8	24	17	1.75
1759434--1759524	46	2.0	46	86	4	130	34	7	16	41	1.77
1762951--1762983	15	2.1	16	88	5	50	51	15	24	9	1.72
1767746--1767777	17	1.9	16	93	6	55	34	3	0	62	1.11
1768114--1768150	16	2.3	16	95	0	65	32	13	16	37	1.87
1768212--1768244	17	2.0	17	88	5	50	66	0	0	33	0.92
1768218--1768285	24	2.8	24	95	4	120	64	0	0	35	0.94
1768230--1768270	13	3.3	13	73	13	50	63	0	0	36	0.95
1771619--1771662	2	22.0	2	95	0	79	2	0	50	47	1.13
1771712--1772058	166	2.0	169	90	7	538	29	15	20	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1775014--1775059	13	3.4	13	77	11	56	17	23	23	34	1.96
1776309--1776438	66	2.0	66	84	0	170	21	21	20	36	1.95
1778160--1778214	15	3.7	15	80	0	65	43	3	12	40	1.60
1778166--1778223	30	2.0	29	86	3	80	44	5	13	36	1.66
1778216--1778265	14	3.6	14	81	2	57	40	4	22	34	1.72
1778552--1778599	23	2.2	20	78	10	51	39	2	2	56	1.23
1778621--1778770	26	5.6	27	71	19	100	52	1	0	46	1.09
1778613--1778778	55	3.0	54	80	14	139	51	1	0	47	1.08
1778700--1778766	8	8.8	8	73	14	52	50	0	0	49	1.00
1778727--1778775	16	3.3	14	75	13	53	57	0	0	42	0.99
1778700--1778789	31	2.8	34	74	19	95	50	0	0	50	1.00
1778724--1778801	23	3.5	22	79	6	70	51	0	0	48	1.00
1778731--1778785	10	5.2	11	73	8	51	54	0	0	45	0.99
1778724--1778799	30	2.5	30	83	10	93	52	0	0	47	1.00
1778683--1778840	52	3.1	51	75	16	139	50	0	1	47	1.17
1781091--1781147	5	11.6	5	96	3	107	40	0	0	59	0.97
1797035--1797094	22	2.7	21	82	5	66	80	1	6	11	0.98
1797025--1797063	14	2.9	13	81	7	51	82	2	2	12	0.89
1797115--1797171	5	10.6	5	87	7	60	71	1	8	17	1.19
1798560--1799357	252	3.2	251	84	3	1016	23	19	24	31	1.98
1798555--1799356	84	9.5	84	83	3	918	23	19	24	31	1.98
1800457--1800643	95	2.0	96	88	1	277	31	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1803144--1803207	9	6.7	10	76	15	55	76	0	10	12	1.02
1803219--1803258	5	7.6	5	83	10	53	75	2	5	17	1.10
1803219--1803258	11	3.8	10	83	9	53	75	2	5	17	1.10
1806581--1806616	14	2.4	16	82	17	51	36	0	5	58	1.22
1807526--1807599	3	24.7	3	94	0	130	31	1	0	67	0.99
1807722--1807777	20	2.8	20	74	15	62	35	28	17	17	1.93
1807825--1807877	20	2.7	20	91	5	81	45	24	18	11	1.82
1807863--1808080	40	5.4	39	86	5	267	37	25	18	19	1.94
1807886--1808075	20	9.4	20	79	2	218	37	25	18	18	1.93
1807825--1808075	121	2.1	121	87	4	355	38	25	18	17	1.92
1808636--1808711	20	3.8	20	84	5	84	52	18	17	11	1.74
1808771--1808817	19	2.5	19	96	0	85	12	17	23	46	1.82
1808742--1808871	52	2.5	53	87	2	172	12	23	21	43	1.86
1808771--1808879	20	5.9	19	78	14	102	12	22	21	44	1.86
1812177--1812240	14	4.6	14	94	0	110	35	0	21	42	1.54
1812176--1812240	28	2.3	28	100	0	130	35	0	21	43	1.53
1812403--1812591	33	5.5	33	83	9	245	11	22	20	46	1.82
1812469--1812535	19	3.5	19	80	8	64	13	20	23	41	1.88
1812403--1812591	72	2.8	66	81	12	236	11	22	20	46	1.82
1812401--1812591	105	1.8	105	91	2	321	11	22	20	45	1.83
1815119--1815172	24	2.2	24	93	0	90	40	20	18	20	1.91
1815119--1815186	24	2.8	24	84	0	64	38	20	17	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1816034--1816201	20	8.3	20	78	9	76	27	19	22	30	1.98
1816085--1816143	20	2.9	21	84	5	84	18	22	22	37	1.94
1816148--1816200	21	2.5	21	90	0	79	33	16	26	22	1.96
1816093--1816179	41	2.1	41	80	0	93	25	19	22	32	1.98
1819756--1819792	20	1.9	20	88	5	58	29	13	2	54	1.53
1821310--1821626	43	7.4	43	88	2	379	28	21	23	26	1.99
1821783--1821829	21	2.2	21	84	0	58	59	19	4	17	1.53
1825257--1825415	52	3.1	52	95	3	293	43	14	7	34	1.74
1826468--1826645	42	4.3	41	82	8	157	27	22	16	33	1.95
1826467--1826645	83	2.1	83	83	7	220	27	22	16	33	1.95
1826715--1826806	40	2.2	42	79	9	100	34	26	13	26	1.92
1830640--1830681	18	2.3	18	84	12	50	23	26	11	38	1.90
1832127--1832206	29	2.8	29	98	0	151	28	36	27	7	1.84
1832253--1832307	19	2.8	20	88	5	94	20	12	45	21	1.84
1832412--1832539	65	2.0	65	93	0	220	24	29	17	28	1.98
1832533--1832572	21	1.9	21	89	0	62	17	30	25	27	1.97
1832940--1832983	21	2.1	21	91	0	70	29	0	15	54	1.42
1833481--1833542	17	3.4	17	73	16	61	40	0	11	48	1.39
1833503--1833546	23	2.0	23	81	4	54	40	0	9	50	1.34
1834750--1834836	40	2.2	41	82	9	103	48	1	6	43	1.37
1834783--1835331	26	21.8	26	75	15	310	44	1	9	44	1.46
1834775--1835331	98	5.3	100	85	10	619	44	1	8	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835448--1835492	24	1.9	24	86	4	65	40	2	4	53	1.33
1835459--1835500	17	2.5	17	80	0	57	40	0	2	57	1.12
1837763--1837796	15	2.2	16	94	5	61	55	5	0	38	1.24
1837849--1837954	30	3.5	30	85	5	133	47	14	0	37	1.50
1838418--1838466	22	2.2	22	92	0	80	24	16	53	6	1.66
1838493--1838565	29	2.5	30	84	6	96	13	32	34	19	1.91
1838587--1838617	15	2.1	15	100	0	62	25	22	19	32	1.97
1850390--1850431	8	5.4	8	88	5	59	14	19	11	54	1.70
1851495--1851541	21	2.2	21	85	11	60	78	4	17	0	0.90
1851497--1851573	17	4.5	17	73	10	50	76	6	14	2	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17